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Comparative genomics reveals the dynamics of chromosome evolution in Lepidoptera.
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Fusion, fission, and scrambling of the bilaterian genome in Bryozoa
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Novel chromosomes and genomes provide new insights into evolution and adaptation of the whole genome duplicated yeast-like fungus TN3-1 isolated from natural honey.
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Robotic Search for Optimal Cell Culture in Regenerative Medicine
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Rapid evolution in Clarkia
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Developmental toxicity of pre-production plastic pellets affects a large swathe of invertebrate taxa
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Functional specialization of Aurora kinase homologs during oogenic meiosis in the tunicate Oikopleura dioica.
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Chromosome-level genome assemblies of Cutaneotrichosporon spp. (Trichosporonales, Basidiomycota) reveal imbalanced evolution between nucleotide sequences and chromosome synteny.
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The human genome contains over a million autonomous exons.
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The brittle star genome illuminates the genetic basis of animal appendage regeneration
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The appendicularian Oikopleura dioica can enhance carbon export in a high CO2 ocean.
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The hydrodynamics and kinematics of the appendicularian tail underpin peristaltic pumping.
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Cycle vital d'un Appendiculaire Oikopleura dioica Fol, 1872 : description et chronologie
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Where the minor things are: a pan-eukaryotic survey suggests neutral processes may explain much of minor intron evolution.
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Robotic cell processing facility for clinical research of retinal cell therapy
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Fertilization in Oikopleura dioica (Tunicata, Appendicularia): Acrosome reaction, cortical reaction and sperm-egg fusion.
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Molecular mechanisms and topological consequences of drastic chromosomal rearrangements of muntjac deer
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Pax37 gene function in Oikopleura dioica supports a neuroepithelial-like origin for its house-making Fol territory
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Genomic basis of recombination suppression in the hybrid between Caenorhabditis briggsae and C. nigoni.
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Third generation sequencing revises the molecular karyotype for Toxoplasma gondii and identifies emerging copy number variants in sexual recombinants
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Chromosome-Wide Evolution and Sex Determination in the Three-Sexed Nematode Auanema rhodensis.
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Comparative genomics of 10 new _Caenorhabditis_ species.
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Evolutionary origin of genomic structural variations in domestic yaks.
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Gelatinous larvacean zooplankton can enhance trophic transfer and carbon sequestration.
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Mechanisms of insertions at a DNA double-strand break.
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Hepatitis C virus RNA is 5'-capped with flavin adenine dinucleotide
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NCBI Taxonomy: a comprehensive update on curation, resources and tools.
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Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids.
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Pyrococcus genome comparison evidences chromosome shuffling-driven evolution.
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Comparative genomics reveals conserved positioning of essential genomic clusters in highly rearranged Thermococcales chromosomes
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Replitrons: A major group of eukaryotic transposons encoding HUH endonuclease.
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Evolutionary traces of miniaturization in a giant-Comparative anatomy of brain and brain nerves in Bathochordaeus stygius (Tunicata, Appendicularia).
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Ancient gene linkages support ctenophores as sister to other animals.
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Evaluating genome dynamics: the constraints on rearrangements within bacterial genomes.
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Genome rearrangement by replication-directed translocation.
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Replication-associated inversions are the dominant form of bacterial chromosome structural variation.
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Evidence for symmetric chromosomal inversions around the replication origin in bacteria.
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Functional analysis of a random-sequence chromosome reveals a high level and the molecular nature of transcriptional noise in yeast cells
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Evolution of the ancestral mammalian karyotype and syntenic regions.
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Abundant capped RNAs are derived from mRNA cleavage at 3’UTR G-Quadruplexes
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A revised classification of the Tunicata, with definitions of the orders, sub-orders, families, sub-families and genera, and analytical keys to the species
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Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage.
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The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing.
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Printing 2-dimentional droplet array for single-cell reverse transcription quantitative PCR assay with a microfluidic robot
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A Phylogenomic Framework and Divergence History of Cephalochordata Amphioxus.
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PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions.
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Three amphioxus reference genomes reveal gene and chromosome evolution of chordates.
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Metabarcoding analysis of trophic sources and linkages in the plankton community of the Kuroshio and neighboring waters.
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Principles of genome evolution in the Drosophila melanogaster species group.
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Coevolution of the CDCA7-HELLS ICF-related nucleosome remodeling complex and DNA methyltransferases
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Generation of a widespread Drosophila inversion by a transposable element.
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Progressive Cactus is a multiple-genome aligner for the thousand-genome era.
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Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water.
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Cactus graphs for genome comparisons.
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Estimation of secondary structure in ribonucleic acids.
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The diagram, a method for comparing sequences. Its use with amino acid and nucleotide sequences.
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Updating the 97% identity threshold for 16S ribosomal RNA OTUs.
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Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts.
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Contrasting modes of macro and microsynteny evolution in a eukaryotic subphylum.
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Chromosome-Level Reference Genomes for Two Strains of Caenorhabditis briggsae: An Improved Platform for Comparative Genomics.
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Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm.
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A telomere-to-telomere assembly of Oscheius tipulae and the evolution of rhabditid nematode chromosomes.
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A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes.
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Speed variations of bacterial replisomes.
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Remarks upon Appendicularia and Doliolum, Two Genera of the Tunicata
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Note sur un nouveau genre d'Appendiculaires.
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Hermann Fol, sa vie et ses travaux, avec un portrait
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Cell culture-based karyotyping of orectolobiform sharks for chromosome-scale genome analysis.
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Finding rearrangements in nanopore DNA reads with last and dnarrange
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Appendicularians: an important food supply for the Argentine anchovy Engraulis anchoita in coastal waters
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House formation and feeding behaviour of_Fritillaria borealis (Appendicularia: Tunicata)
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Appendicularia (Tunicata) in an Antarctic Glacial Fjord–Chaotic Fjordic Structure Community or Good Indicators of Oceanic Water Masses?
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Improved Nanopore full-length cDNA sequencing by PCR-suppression.
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Muscle5: High-accuracy alignment ensembles enable unbiased assessments of sequence homology and phylogeny.
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Fritillaria ragusina sp. nov., a new species of Appendicularia (Tunicata) from the Adriatic Sea.
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New mesopelagic larvaceans in the genus Fritillaria from Monterey Bay, California
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The highly specialised gut of Fritillariidae (Appendicularia: Tunicata).
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Laboratory study of Fritillaria lifecycle reveals key morphogenetic events leading to genus-specific anatomy.
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The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica.
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Chitin-based barrier immunity and its loss predated mucus-colonization by indigenous gut microbiota.
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Remarks upon Appendicularia and Doliolum, Two Genera of the Tunicata
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Evolution of the FGF Gene Family.
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Towards complete and error-free genome assemblies of all vertebrate species
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RNA recoding in cephalopods tailors microtubule motor protein function
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Production of retinoic acid by engineered Saccharomyces cerevisiae using an endogenous aldehyde dehydrogenase.
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An inverse small molecule screen to design a chemically defined medium supporting long-term growth of Drosophila cell lines.
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Comparison of six methods for Loa loa genomic DNA extraction.
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Polyamine as a growth promoter for cultured insect cells.
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Lipid and lipid class content of the pelagic tunicate Oikopleura vanhoeffeni
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Continued growth and cell proliferation into adulthood in the notochord of the appendicularian Oikopleura dioica.
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Genetic algorithm as an optimization tool for the development of sponge cell culture media
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Optimization of a feed medium for fed-batch culture of insect cells using a genetic algorithm
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Optimization of a fermentation medium using neural networks and genetic algorithms
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High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance.
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The Mechanism of Accumulation of Vanadium by Ascidians: Some Progress towards an Understanding of this Unusual Phenomenon
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Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data.
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Rhythm of secretion of Oikopleurid's houses
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Measures of synteny conservation between species pairs.
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Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features
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Widespread introgression across a phylogeny of 155 Drosophila genomes
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Mixing genome annotation methods in a comparative analysis inflates the apparent number of lineage-specific genes.
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Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms
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Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes.
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Repeated translocation of a supergene underlying rapid sex chromosome turnover in Takifugu pufferfish.
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Convergent origins and rapid evolution of spliced leader trans-splicing in metazoa: insights from the ctenophora and hydrozoa.
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Multiscale analysis of the randomization limits of the chromosomal gene organization between Lepidoptera and Diptera.
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Telomere-to-Telomere Genome Assembly of _Bursaphelenchus okinawaensis_ Strain SH1.
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Fast and efficient DNA replication with purified human proteins.
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Goel M, Sun H, Jiao WB, Schneeberger K. SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies.
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Twin priming: a proposed mechanism for the creation of inversions in L1 retrotransposition.
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Collinearity and the genetic code
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Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization.
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Genome and transcriptome mechanisms driving cephalopod evolution.
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SLIDR and SLOPPR: Flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data
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The caspase family in urochordates: distinct evolutionary fates in ascidians and larvaceans.
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Chromosome evolution and the genetic basis of agronomically important traits in greater yam.
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Metazoans and Intrinsic Apoptosis: An Evolutionary Analysis of the Bcl-2 Family.
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Parameters for accurate genome alignment.
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Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes.
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Changes in appendicularian Oikopleura dioica abundance caused by invasion of alien ctenophores in the Black Sea
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Altered miRNA repertoire in the simplified chordate, Oikopleura dioica.
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Causes and Effects of Loss of Classical Nonhomologous End Joining Pathway in Parasitic Eukaryotes.
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Influence of body mass, food concentration, temperature and filtering activity on the oxygen uptake of the appendicularian Oikopleura dioica
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Improved DNA-versus-Protein Homology Search for Protein Fossils
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Global ecological and biogeochemical impacts of pelagic tunicates
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Transcriptional neighborhoods regulate transcript isoform lengths and expression levels.
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Evolution of CDK1 Paralog Specializations in a Lineage With Fast Developing Planktonic Embryos.
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Minimally-overlapping words for sequence similarity search.
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CNEr: A toolkit for exploring extreme noncoding conservation.
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Comprehensive determination of transcription start sites derived from all RNA polymerases using ReCappable-seq.
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Deeply conserved synteny and the evolution of metazoan chromosomes.
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Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes.
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AnchorWave: Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication.
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Germline development during embryogenesis of the larvacean, Oikopleura dioica.
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Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.
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A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi.
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Comparative study on synteny between yeasts and vertebrates.
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Characteristic folding pattern of polytene chromosomes in Drosophila salivary gland nuclei.
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The transposon Galileo generates natural chromosomal inversions in Drosophila by ectopic recombination.
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Structural diversity and African origin of the 17q21.31 inversion polymorphism.
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The distribution and most recent common ancestor of the 17q21 inversion in humans.
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A common inversion under selection in Europeans.
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Contributions to the Genetics, Taxonomy, and Ecology of Drosophila pseudoobscura and its relatives
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Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis.
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Morphological differences between two sibling species; Drosophila pseudoobscura and Drosophila persimilis
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Inversions in the Chromosomes of Drosophila Pseudoobscura.
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BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes.
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Asymmetric Fitness of Second-Generation Interspecific Hybrids Between _Ciona robusta_ and _Ciona intestinalis_.
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Cardiopharyngeal deconstruction and ancestral tunicate sessility.
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DNA repair inhibition leads to active export of repetitive sequences to the cytoplasm triggering an inflammatory response.
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Prevalence of small inversions in yeast gene order evolution
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Distribution of Oikopleura (Vexillaria) Dioica Fol, 1872 (Class: Appendicularia) in the southern Black sea in 2006-2007
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Three genomes in the algal genus Volvox reveal the fate of a haploid sex-determining region after a transition to homothallism
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Direct observation of independently moving replisomes in Escherichia coli.
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The role of beak shape in octopodid taxonomy
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HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
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capCLIP: a new tool to probe translational control in human cells through capture and identification of the eIF4E-mRNA interactome.
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Multiplexed direct detection of barcoded protein reporters on a nanopore array
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Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics
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Protein phosphatase 2A is essential to maintain meiotic arrest, and to prevent Ca2+ burst at spawning and eventual parthenogenesis in the larvacean Oikopleura dioica.
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Genomic structural variants constrain and facilitate adaptation in natural populations of Theobroma cacao, the chocolate tree.
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DNA repeats lead to the accelerated loss of gene order in bacteria.
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Unusual composition of a yeast chromosome arm is associated with its delayed replication.
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Temperature dependence of spontaneous mutation rates.
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Exosome-mediated horizontal gene transfer occurs in double-strand break repair during genome editing.
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Appendicularians
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Arrhenius equation for developmental processes.
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Ultrarapid detection of SARS-CoV-2 RNA using a reverse transcription-free exponential amplification reaction, RTF-EXPAR.
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Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
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Phylogenetic Analyses of Glycosyl Hydrolase Family 6 Genes in Tunicates: Possible Horizontal Transfer.
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Caenorhabditis elegans DSB-3 reveals conservation and divergence among protein complexes promoting meiotic double-strand breaks.
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3D genomics across the tree of life reveals condensin II as a determinant of architecture type.
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DNA double-strand breaks induced by high NaCl occur predominantly in gene deserts.
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The saltiness of the sea breaks DNA in marine invertebrates: possible implications for animal evolution.
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Complete Genome Sequence of Vibrio campbellii LMB 29 Isolated from Red Drum with Four Native Megaplasmids.
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Modular Evolution and Population Variability of Oikopleura dioica Metallothioneins.
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Abandoned larvacean houses: a unique food source in the pelagic environment
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Locally adaptive inversions modulate genetic variation at different geographic scales in a seaweed fly
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Giant lungfish genome elucidates the conquest of land by vertebrates.
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Spo11 generates gaps through concerted cuts at sites of topological stress.
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Tunicates illuminate the enigmatic evolution of chordate metallothioneins by gene gains and losses, independent modular expansions and functional convergences.
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Massive Gene Loss and Function Shuffling in Appendicularians Stretch the Boundaries of Chordate Wnt Family Evolution.
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Concerted cutting by Spo11 illuminates meiotic DNA break mechanics.
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Diet of anguilloid larvae: leptocephali feed selectively on larvacean houses and fecal pellets.
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The Beginning of the End: A Chromosomal Assembly of the New World Malaria Mosquito Ends with a Novel Telomere. G3 (Bethesda).
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Accurate genomic variant detection in single cells with primary template-directed amplification.
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Role of intraspecific competition in intrinsic growth rate regulation in an Oikopleura dioica (Tunicata) population
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An integrative taxonomic framework for the study of the genus Ciona (Ascidiacea) and description of a new species, Ciona intermedia
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Chromosomal Inversion Polymorphisms in Two Sympatric Ascidian Lineages.
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Long-read sequencing of 3,622 Icelanders provides insight into the role of structural variants in human diseases and other traits.
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Nkx2-1 and FoxE regionalize glandular (mucus-producing) and thyroid-equivalent traits in the endostyle of the chordate Oikopleura dioica.
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Improved search heuristics find 20,000 new alignments between human and mouse genomes.
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A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning.
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The filter-house of the larvacean Oikopleura dioica. A complex extracellular architecture: from fiber production to rudimentary state to inflated house.
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How fast is the sessile ciona?
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Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum.
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Genetic and spatial organization of the unusual chromosomes of the dinoflagellate Symbiodinium microadriaticum.
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Analysis of muntjac deer genome and chromatin architecture reveals rapid karyotype evolution.
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Toward a global reference database of COI barcodes for marine zooplankton.
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Establishing Sustainable Cell Lines of a Coral, Acropora tenuis.
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Evolution of genes and genomes on the Drosophila phylogeny.
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A Nuclear mtDNA Concatemer (Mega-NUMT) Could Mimic Paternal Inheritance of Mitochondrial Genome.
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A supernumerary designer chromosome for modular in vivo pathway assembly in Saccharomyces cerevisiae.
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Comparative evolutionary analysis of rDNA ITS regions in Drosophila.
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Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing.
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Compensatory base changes in ITS2 secondary structures correlate with the biological species concept despite intragenomic variability in ITS2 sequences–a proof of concept.
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New apparatuses for cultivation of appendicularians.
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A new appendicularian, Oikopleura gorskyi n. sp. (Tunicata), from norwegian fjords
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The structure, function and evolution of a complete human chromosome 8.
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The use of melting curves as a novel approach for validation of real-time PCR instruments.
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3D reconstruction of structures of hatched larva and young juvenile of the larvacean Oikopleura dioica using SBF-SEM.
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Evolution of genome structure in the Drosophila simulans species complex.
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eDNAFlow, an automated, reproducible and scalable workflow for analysis of environmental DNA (eDNA) sequences exploiting Nextflow and Singularity
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Jointly aligning a group of DNA reads improves accuracy of identifying large deletions.
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Bandage: interactive visualization of de novo genome assemblies.
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A short ORF-encoded transcriptional regulator.
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The First Ultrastructural Description of Appendicularians (Chordata: Tunicata) Infected by Microsporidia-Like Protists
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Alimentary tract of kowalevskiidae (appendicularia, tunicata) and evolutionary implications
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Simple and efficient measurement of transcription initiation and transcript levels with STRIPE-seq
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Fossil appendicularians in the early cambrian
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Identifying and removing haplotypic duplication in primary genome assemblies.
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A novel measure of non-coding genome conservation identifies genomic regulatory blocks within primates.
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On the evolutionary origin of eukaryotic DNA methyltransferases and Dnmt2.
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DNA methylation in amphioxus: from ancestral functions to new roles in vertebrates.
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Platypus and echidna genomes reveal mammalian biology and evolution.
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Phylogenetic analysis of phenotypic characters of Tunicata supports basal Appendicularia and monophyletic Ascidiacea
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Exon 3 of the NUMB Gene Emerged in the Chordate Lineage Coopting the NUMB Protein to the Regulation of MDM2.
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True scale-free networks hidden by finite size effects.
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MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species.
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A remote-controlled adaptive medchem lab: an innovative approach to enable drug discovery in the 21st Century.
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Organic synthesis in a modular robotic system driven by a chemical programming language.
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A robotic platform for flow synthesis of organic compounds informed by AI planning.
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Automated design of thousands of nonrepetitive parts for engineering stable genetic systems.
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Computational planning of the synthesis of complex natural products.
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A specific combination of dual index adaptors decreases the sensitivity of amplicon sequencing with the Illumina platform.
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Reconstruction of the ancestral metazoan genome reveals an increase in genomic novelty.
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Dense and pleiotropic regulatory information in a developmental enhancer.
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Universal robotic gripper based on the jamming of granular material
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Selective Suppression of Polymerase Chain Reaction and Its Most Popular Applications.
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Use of Cap Analysis Gene Expression to detect human papillomavirus promoter activity patterns at different disease stages.
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The eukaryotic translation initiation factor eIF4E elevates steady-state m7G capping of coding and noncoding transcripts.
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Dynamic evolution of great ape Y chromosomes.
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Conservative route to genome compaction in a miniature annelid
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Oikopleura.
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Liquid drop of DNA libraries reveals total genome information.
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Conformation of sister chromatids in the replicated human genome.
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Characterization and engineering of a two-enzyme system for plastics depolymerization.
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Eighteen coral genomes reveal the evolutionary origin of Acropora strategies to accommodate environmental changes.
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The origin and diversification of pteropods precede past perturbations in the Earth's carbon cycle.
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Relatives of rubella virus in diverse mammals.
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Clinical characteristics of jellyfish stings in Japan.
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Evolutionary history of free-swimming and sessile lifestyles in urochordates as deduced from 18S rDNA molecular phylogeny.
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Scallop genome provides insights into evolution of bilaterian karyotype and development.
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Biosynthesis of medicinal tropane alkaloids in yeast.
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Reconstruction of the birth of a male sex chromosome present in Atlantic herring.
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How malleable is the eukaryotic genome? Extreme rate of chromosomal rearrangement in the genus Drosophila.
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Evolution of a large, conserved, and syntenic gene family in insects.
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Productivity and grazing impact of Oikopleura dioica (Tunicata, Appendicularia) in Tokyo Bay
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Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition.
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Nucleolar RNA polymerase II drives ribosome biogenesis.
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Inferring Tunicate Relationships and the Evolution of the Tunicate Hox Cluster with the Genome of Corella inflata.
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Phylogenomics offers resolution of major tunicate relationships.
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Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.
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Highly active rubiscos discovered by systematic interrogation of natural sequence diversity.
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Rapid isothermal amplification and portable detection system for SARS-CoV-2.
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Changing Infrastructural Practices: Routine and Reproducibility in Automated Interdisciplinary Bioscience.
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Vianna JA, Fernandes FAN, Frugone MJ, Figueiró HV, Pertierra LR, Noll D, Bi K, Wang-Claypool CY, Lowther A, Parker P, Le Bohec C, Bonadonna F, Wienecke B, Pistorius P, Steinfurth A, Burridge CP, Dantas GPM, Poulin E, Simison WB, Henderson J, Eizirik E, Nery MF, Bowie RCK.
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Patterning through differential endoreduplication in epithelial organogenesis of the chordate, Oikopleura dioica.
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High throughput, error corrected Nanopore single cell transcriptome sequencing
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Quantitative analysis of centromeric FISH spots during the cell cycle by image cytometry.
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Deeply conserved synteny resolves early events in vertebrate evolution.
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SBML Level 3: an extensible format for the exchange and reuse of biological models.
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Accurate identification of centromere locations in yeast genomes using Hi-C.
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Sc3.0: revamping and minimizing the yeast genome
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Spliced leader RNAs from lower eukaryotes are trans-spliced in mammalian cells.
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Increased Mutation Rate Is Linked to Genome Reduction in Prokaryotes.
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An artificial aquatic polyp that wirelessly attracts, grasps, and releases objects.
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ZipSeq: barcoding for real-time mapping of single cell transcriptomes.
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Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes.
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Assembly of the threespine stickleback Y chromosome reveals convergent signatures of sex chromosome evolution
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Telomere-to-telomere assembly of a complete human X chromosome.
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A Y-like social chromosome causes alternative colony organization in fire ants.
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A new strategy to amplify degraded RNA from small tissue samples for microarray studies.
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A genome database for a Japanese population of the larvacean Oikopleura dioica.
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Single cell reverse transcription-polymerase chain reaction analysis of rat supraoptic magnocellular neurons: neuropeptide phenotypes and high voltage-gated calcium channel subtypes.
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Ocean currents promote rare species diversity in protists
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Embryonic tissue differentiation is characterized by transitions in cell cycle dynamic- associated core promoter regulation.
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Insights into variation in meiosis from 31,228 human sperm genomes.
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Analysis of gene expression in single live neurons.
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A mobile robotic chemist.
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Streamlined Sampling and Cultivation of the Pelagic Cosmopolitan Larvacean, Oikopleura dioica.
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Primer Extension Enrichment Reaction (PEER): A New Subtraction Method for Identification of Genetic Differences Between Biological Specimens
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Chromosome-Level Assembly of _Drosophila bifasciata_ Reveals Important Karyotypic Transition of the X Chromosome.
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The amphioxus genome and the evolution of the chordate karyotype.
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Olf-1-binding Site: Characterization of an Olfactory Neuron-Specific Promoter Motif
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The 3D organization of chromatin explains evolutionary fragile genomic regions.
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Chromosome evolution at the origin of the ancestral vertebrate genome.
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Zooplankton growth rates: extraordinary production by the larvacean Oikopleura dioica in tropical waters
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Elimination of rNMPs from mitochondrial DNA has no effect on its stability.
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Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics.
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An open-source drug discovery platform enables ultra-large virtual screens.
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Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica.
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Massively multiplexed nucleic acid detection with Cas13.
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Unbiased screen of RNA tailing activities reveals a poly(UG) polymerase.
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Common homozygosity for predicted loss-of-function variants reveals both redundant and advantageous effects of dispensable human genes.
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An aphid RNA transcript migrates systemically within plants and is a virulence factor
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Phenotypic Diversification by Enhanced Genome Restructuring After Induction of Multiple DNA Double-Strand Breaks
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Revealing Enigmatic Mucus Structures in the Deep Sea Using DeepPIV
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Polymorphic Centromere Locations in the Pathogenic Yeast Candida parapsilosis
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Metallothioneins of the urochordate Oikopleura dioica have Cys-rich tandem repeats, large size and cadmium-binding preference.
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Cell lines derived from late embryonic stages of Drosophila melanogaster.
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Diffusion Tubes: A Method for the Mass Culture of Ctenophores and Other Pelagic Marine Invertebrates
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Shedding light on the expansion and diversification of the Cdc48 protein family during the rise of the eukaryotic cell.
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The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion.
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Evolutionary loss of peroxisomes--not limited to parasites.
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Nouvelle technique d'élevage des appendiculaires
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The cultivation of an appendicularian through numerous generations.
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Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita.
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De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds.
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What is rarity?
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An electron microscopic study of early gonadogenesis in the hermaphroditic appendicularian Oikopleura gracilis (Tunicata, Oikopleuridae)
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Transforming activity of an oncoprotein-encoding circular RNA from human papillomavirus.
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The Scaly-foot Snail genome and implications for the origins of biomineralised armour.
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A cnidarian parasite of salmon (Myxozoa: Henneguya) lacks a mitochondrial genome.
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The intelligent knife (iKnife) and its intraoperative diagnostic advantage for the treatment of cervical disease.
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Embryonic expression of endogenous retroviral RNAs in somatic tissues adjacent to the Oikopleura germline.
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One-step detection of the 2009 pandemic influenza A(H1N1) virus by the RT-SmartAmp assay and its clinical validation.
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Evolution of the mitochondrial genetic code. II. Reassignment of codon AUA from isoleucine to methionine.
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Environmental DNA reveals seasonal shifts and potential interactions in a marine community.
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Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events.
Posted
The prehistory of biology preprints: A forgotten experiment from the 1960s.
Posted
Codon - Anticodon Pairing The Wobble Hypothesis
Posted
Retroelement dynamics and a novel type of chordate retrovirus-like element in the miniature genome of the tunicate Oikopleura dioica.
Posted
MAPCap allows high-resolution detection and differential expression analysis of transcription start sites.
Posted
Mitogenomics Reveals a Novel Genetic Code in Hemichordata.
Posted
Unusual genetic codes and a novel gene structure for tRNA(AGYSer) in starfish mitochondrial DNA.
Posted
Gene expression and cell identity controlled by anaphase-promoting complex.
Posted
Genomic evidence for two phylogenetic species and long-term population bottlenecks in red pandas.
Posted
Widespread use of the “ascidian” mitochondrial genetic code in tunicates.
Posted
Long-range single-molecule mapping of chromatin accessibility in eukaryotes.
Posted
HELLS and PRDM9 form a pioneer complex to open chromatin at meiotic recombination hot spots.
Posted
The X chromosome of the German cockroach, Blattella germanica, is homologous to a fly X chromosome despite 400 million years divergence.
Posted
Dinucleoside polyphosphates act as 5'-RNA caps in bacteria.
Posted
ORTHOSCOPE Analysis Reveals the Presence of the Cellulose Synthase Gene in All Tunicate Genomes but Not in Other Animal Genomes.
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ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates.
Posted
A chordate species lacking Nodal utilizes calcium oscillation and Bmp for left-right patterning.
Posted
Animal, Fungi, and Plant Genome Sequences Harbor Different Non-Canonical Splice Sites.
Posted
Extension of mismatched 3' termini of DNA is a major determinant of the infidelity of human immunodeficiency virus type 1 reverse transcriptase.
Posted
Fidelity of in vitro DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase.
Posted
Template-switching mechanism of a group II intron-encoded reverse transcriptase and its implications for biological function and RNA-Seq.
Posted
Mechanism of DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase.
Posted
Loss of centromere function drives karyotype evolution in closely related Malassezia species.
Posted
Details of the evolutionary history from invertebrates to vertebrates, as deduced from the sequences of 18S rDNA.
Posted
Transcription of the 5'-terminal cap nucleotide by RNA-dependent DNA polymerase: possible involvement in retroviral reverse transcription.
Posted
Seasonal and spatial variability of appendicularian density and taxonomic composition in the Caravelas Estuary (Northeastern Brazil) and adjacent coastal area
Posted
Sites of bioluminescence in the appendicularians Oikopleura dioica and O. labradoriensis (Urochordata: Larvacea).
Posted
Generation and use of high-quality cDNA from small amounts of total RNA by SMART PCR.
Posted
RNA sequencing by direct tagmentation of RNA/DNA hybrids.
Posted
Simple and inexpensive three-step rapid amplification of cDNA 5' ends using 5' phosphorylated primers.
Posted
Determination of the site of first strand transfer during Moloney murine leukemia virus reverse transcription and identification of strand transfer-associated reverse transcriptase errors.
Posted
Generation and characterization of new highly thermostable and processive M-MuLV reverse transcriptase variants.
Posted
Machine-driven parameter screen of biochemical reactions.
Posted
Molecular cytogenetic characterization of Ciona intestinalis chromosomes.
Posted
D-GENIES: dot plot large genomes in an interactive, efficient and simple way.
Posted
A High-Quality De Novo Genome Assembly from a Single Mosquito using PacBio Sequencing
Posted
Definitive demonstration by synthesis of genome annotation completeness.
Posted
Temperature-dependent template switching during in vitro cDNA synthesis by the AMV-reverse transcriptase.
Posted
OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs.
Posted
Characterization of Agrobacterium tumefaciens DNA ligases C and D.
Posted
A scalable pipeline for designing reconfigurable organisms.
Posted
Isolement, en culture in vivo, de lignées cellulaires diploïdes de Drosophila melanogaster.
Posted
De novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole-genome duplication.
Posted
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.
Posted
5' RACE by tailing a general template-switching oligonucleotide.
Posted
Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction.
Posted
Functional specialization of chordate CDK1 paralogs during oogenic meiosis.
Posted
Oocyte selection is concurrent with meiosis resumption in the coenocystic oogenesis of Oikopleura.
Posted
Phosphorylation of serine 10 in histone H3, what for?
Posted
DNA barcoding reveals that injected transgenes are predominantly processed by homologous recombination in mouse zygote.
Posted
Rapid Oocyte Growth and Artificial Fertilization of the Larvaceans Oikopleura dioica and Oikopleura longicauda
Posted
The Oikopleura coenocyst, a unique chordate germ cell permitting rapid, extensive modulation of oocyte production.
Posted
Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing.
Posted
Stable recombination hotspots in birds.
Posted
Copolymerization of single-cell nucleic acids into balls of acrylamide gel.
Posted
Novel approach reveals genomic landscapes of single-strand DNA breaks with nucleotide resolution in human cells.
Posted
New bobtail squid (Sepiolidae: Sepiolinae) from the Ryukyu islands revealed by molecular and morphological analysis.
Posted
Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Posted
Giant larvacean houses: observations from deep submersibles.
Posted
First records of a giant pelagic tunicate, Bathochordaeus charon (Urochordata, Larvacea), from the eastern Pacific Ocean, with notes on its biology
Posted
The genetic map of goldfish (Carassius auratus) provided insights to the divergent genome evolutions in the Cyprinidae family.
Posted
Predicting Genes in Single Genomes with AUGUSTUS.
Posted
A large close relative of C. elegans is slow-developing but not long-lived.
Posted
BUSCO: Assessing Genome Assembly and Annotation Completeness.
Posted
Dramatic evolution of body length due to postembryonic changes in cell size in a newly discovered close relative of Caenorhabditis elegans
Posted
Biology and genome of a newly discovered sibling species of Caenorhabditis elegans
Posted
Field studies reveal a close relative of C. elegans thrives in the fresh figs of Ficus septica and disperses on its Ceratosolen pollinating wasps.
Posted
Genome Architecture and Evolution of a Unichromosomal Asexual Nematode.
Posted
Muller “Elements” in Drosophila: How the Search for the Genetic Basis for Speciation Led to the Birth of Comparative Genomics.
Posted
The genome of a subterrestrial nematode reveals adaptations to heat
Posted
Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction.
Posted
Genetic Factors Affecting the Strength of Linkage in Drosophila.
Posted
Error-Speed Correlations in Biopolymer Synthesis.
Posted
RaGOO: fast and accurate reference-guided scaffolding of draft genomes.
Posted
Three-dimensional folding and functional organization principles of the Drosophila genome.
Posted
Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early Drosophila melanogaster embryo.
Posted
Inversion variants in human and primate genomes.
Posted
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.
Posted
A chromosome-level assembly of the Atlantic herring genome-detection of a supergene and other signals of selection.
Posted
Quantifying the RNA cap epitranscriptome reveals novel caps in cellular and viral RNA.
Posted
Urochordates are monophyletic within the deuterostomes.
Posted
Fast machine-learning online optimization of ultra-cold-atom experiments.
Posted
Evolution of spliceosomal snRNA genes in metazoan animals.
Posted
Evolution of the U2 Spliceosome for Processing Numerous and Highly Diverse Non-canonical Introns in the Chordate Fritillaria borealis.
Posted
Biodegradation of waste PET: A sustainable solution for dealing with plastic pollution.
Posted
Tn5 transposase and tagmentation procedures for massively scaled sequencing projects.
Posted
FFPEcap-seq: a method for sequencing capped RNAs in formalin-fixed paraffin-embedded samples.
Posted
Gibbon genome and the fast karyotype evolution of small apes.
Posted
Epigenetic maintenance of topological domains in the highly rearranged gibbon genome.
Posted
Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling.
Posted
Molecular phylogeny and divergence times of drosophilid species.
Posted
Relationships in the Drosophila obscura species group, inferred from mitochondrial cytochrome oxidase II sequences.
Posted
Comprehensive single cell transcriptional profiling of a multicellular organism by combinatorial indexing
Posted
Integrating Hi-C links with assembly graphs for chromosome-scale assembly
Posted
Heritability of morphological and life history traits in a pelagic tunicate
Posted
Chromothripsis and beyond: rapid genome evolution from complex chromosomal rearrangements
Posted
Expansion of cyclin D and CDK1 paralogs in Oikopleura dioica, a chordate employing diverse cell cycle variants.
Posted
Multiple horizontally acquired genes from fungal and prokaryotic donors encode cellulolytic enzymes in the bdelloid rotifer Adineta ricciae.
Posted
Human papillomavirus 16 promotes microhomology-mediated end-joining.
Posted
A nearly-complete genome of Ciona intestinalis type A (C. robusta) reveals the contribution of inversion to chromosomal evolution in the genus Ciona.
Posted
FACIL: Fast and Accurate Genetic Code Inference and Logo.
Posted
CoreTracker: accurate codon reassignment prediction, applied to mitochondrial genomes.
Posted
Ultrasound imaging of gene expression in mammalian cells
Posted
The classification of Antarctic appendicularians: the Oikopleura gaussica group
Posted
A new genus of midwater appendicularian: Mesoikopleura with four species
Posted
Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
Posted
Imprinting sets the stage for speciation.
Posted
Hungry codons promote frameshifting in human mitochondrial ribosomes.
Posted
In situ observations of giant appendicularians in Monterey Bay
Posted
The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.
Posted
Gene duplications and the origins of vertebrate development.
Posted
Yellow-stained oikopleurid appendicularians are caused by bacterial parasitism
Posted
The Pop-gen Pipeline Platform: A Software Platform for Facilitating Population Genomic Analyses
Posted
Acoustic reporter genes for noninvasive imaging of microorganisms in mammalian hosts.
Posted
Pre- and peri-implantation Zika virus infection impairs fetal development by targeting trophectoderm cells.
Posted
Taxonomic identification of appendicularians collected in the epipelagic waters off northern Chile (Tunicata, Appendicularia)
Posted
Production of Oikopleura longicauda (Tunicata: Appendicularia) in Toyama Bay, southern Japan Sea
Posted
Temporal and vertical distributions of three appendicularian species (Tunicata) in Conception Bay, Newfoundland
Posted
Extreme Mitogenomic Variation in Natural Populations of Chaetognaths.
Posted
Symbiotic organs shaped by distinct modes of genome evolution in cephalopods.
Posted
House Production by Oikopleura dioica (Tunicata, Appendicularia) Under Laboratory Conditions
Posted
Seasonal occurrence and vertical distribution of appendicularians in Toyama Bay, southern Japan Sea
Posted
Simple procedure for sperm cryopreservation in the larvacean tunicate Oikopleura dioica.
Posted
Chromosomal Rearrangements as Barriers to Genetic Homogenization between Archaic and Modern Humans.
Posted
Genome architecture and stability in the Saccharomyces cerevisiae knockout collection.
Posted
La couche öikoplastique de l'Appendiculaire Oïkopleura albicans (Leuckart) (Tunicata)
Posted
Using data-compressors for statistical analysis of problems on homogeneity testing and classification
Posted
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment.
Posted
Taxonomic correlates of bioluminescence among appendicularians (urochordata: larvacea)
Posted
The vertical distribution and biological transport of marine microplastics across the epipelagic and mesopelagic water column.
Posted
Giant larvacean houses: rapid carbon transport to the deep sea floor.
Posted
Seasonal succession of zooplankton in coastal waters of the Argentine Sea (Southwest Atlantic Ocean): prevalence of classical or microbial food webs
Posted
Production of tropical larvaceans in Kingston Harbour, Jamaica: are we ignoring an important secondary producer?
Posted
Studies on the Zooplankton in Omura Bay―II Seasonal Occurrences of Rotatoria, Cladocera, Sagittoidea, Appendiculata and Benthos Larvae
Posted
Inferring whole-genome histories in large population datasets.
Posted
Transcriptional regulation of a horizontally transferred gene from bacterium to chordate.
Posted
Tunic morphology and cellulosic components of pyrosomas, doliolids, and salps (thaliacea, urochordata).
Posted
Cellulose production and the evolution of the sessile lifestyle in ascidians
Posted
Blooms of tunicates Oikopleura spp. and Dolioletta gegenbauri in the Seto Inland Sea, Japan, during summer
Posted
Highly efficient single-stranded DNA ligation technique improves low-input whole-genome bisulfite sequencing by post-bisulfite adaptor tagging.
Posted
Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe.
Posted
A new mesopelagic larvacean, Mesochordaeus erythrocephalus, sp. nov., from Monterey Bay, with a description of its filtering house
Posted
The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria.
Posted
A single-molecule sequencing assay for the comprehensive profiling of T4 DNA ligase fidelity and bias during DNA end-joining.
Posted
Interannual patterns during spring and late summer of larvaceans and pteropods in the coastal Gulf of Alaska, and their relationship to pink salmon survival
Posted
Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome.
Posted
Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication.
Posted
Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
Posted
Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression.
Posted
Continuous Meter-Scale Synthesis of Weavable Tunicate Cellulose/Carbon Nanotube Fibers for High-Performance Wearable Sensors.
Posted
Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids.
Posted
Embryology of a planktonic tunicate reveals traces of sessility.
Posted
Gap junction-dependent coordination of intercellular calcium signalling in the developing appendicularian tunicate Oikopleura dioica.
Posted
Distribution of pelagic tunicates in the western part of the Bay of Bengal
Posted
Studies on the distribution of appendicularians and some thaliaceans of the North Pacific, with some morphological notes.
Posted
Switching of INCENP paralogs controls transitions in mitotic chromosomal passenger complex functions.
Posted
Fluorescent in situ hybridization to ascidian chromosomes.
Posted
Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis.
Posted
Lifespan extension in a semelparous chordate occurs via developmental growth arrest just prior to meiotic entry.
Posted
Complete mtDNA of Ciona intestinalis reveals extensive gene rearrangement and the presence of an atp8 and an extra trnM gene in ascidians.
Posted
Transcript mapping and genome annotation of ascidian mtDNA using EST data.
Posted
Nucleotide sequence of cytochrome oxidase (subunit III) from the mitochondrion of the tunicate Pyura stolonifera: evidence that AGR encodes glycine.
Posted
Host Control of Symbiont Natural Product Chemistry in Cryptic Populations of the Tunicate Lissoclinum patella
Posted
Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny
Posted
Complete nucleotide sequence of the mitochondrial genome of Doliolum nationalis with implications for evolution of urochordates.
Posted
One tunic but more than one barcode: evolutionary insights from dynamic mitochondrial DNA in Salpa thompsoni (Tunicata: Salpida)
Posted
UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota.
Posted
The main features of the craniate mitochondrial DNA between the ND1 and the COI genes were established in the common ancestor with the lancelet.
Posted
Complete sequence, gene arrangement, and genetic code of mitochondrial DNA of the cephalochordate Branchiostoma floridae (Amphioxus)
Posted
Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates.
Posted
Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.
Posted
Centromere evolution and CpG methylation during vertebrate speciation.
Posted
Complete DNA sequence of the mitochondrial genome of the ascidian Halocynthia roretzi (Chordata, Urochordata).
Posted
An extra tRNAGly(U*CU) found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine.
Posted
Codon reassignment and amino acid composition in hemichordate mitochondria.
Posted
Codons AGA and AGG are read as glycine in ascidian mitochondria.
Posted
Mitochondrial genome of Ciona savignyi (Urochordata, Ascidiacea, Enterogona): comparison of gene arrangement and tRNA genes with Halocynthia roretzi mitochondrial genome.
Posted
The mitochondrial genome of Phallusia mammillata and Phallusia fumigata (Tunicata, Ascidiacea): high genome plasticity at intra-genus level.
Posted
Mechanisms of tRNA import into yeast mitochondria: an overview.
Posted
Genomic Structural Variations Within Five Continental Populations of Drosophila melanogaster.
Posted
High-resolution mapping of meiotic crossovers and non-crossovers in yeast.
Posted
Distribution patterns of appendicularians and copepods and their relationship on the northwest continental shelf of South China Sea during summer
Posted
Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment.
Posted
Zooplankton assemblages as indicators of seasonal changes in water masses in the boundary waters between the East China Sea and the Taiwan Strait
Posted
Mesozooplankton Distribution and Composition on the Northeastern Coast of Taiwan during Autumn: Effects of the Kuroshio Current and Hydrothermal Vents
Posted
Distribution and abundance of pelagic tunicates in the North Yellow Sea
Posted
Taxonomic Composition and Seasonal Distribution Changes of Pelagic Tunicates in the Waters Off Nuclear Power Plants in Northern Taiwan in Relation to Environmental Conditions
Posted
Pelagic tunicates in the China Seas
Posted
Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2A.Z-containing nucleosomes.
Posted
Gut ultrastructure of the appendicularian Oikopleura dioica (Tunicata)
Posted
Histone variant innovation in a rapidly evolving chordate lineage.
Posted
Morphological evidence that the molecularly determined Ciona intestinalis type A and type B are different species: Ciona robusta and Ciona intestinalis.
Posted
The Nonconcept of Species Diversity: A Critique and Alternative Parameters
Posted
Cellulose in the house of the appendicularian Oikopleura rufescens.
Posted
Histone H4 post-translational modifications in chordate mitotic and endoreduplicative cell cycles.
Posted
Plasticity of histone modifications across the invertebrate to vertebrate transition: histone H3 lysine 4 trimethylation in heterochromatin.
Posted
Conserved patterns of nuclear compartmentalization are not observed in the chordate Oikopleura.
Posted
Absence of evidence is not evidence of absence: Nanopore sequencing and complete assembly of the European lobster (Homarus gammarus) mitogenome uncovers the missing nad2 and a new major gene cluster duplication.
Posted
Assembly of a Complete Mitogenome of Chrysanthemum nankingense Using Oxford Nanopore Long Reads and the Diversity and Evolution of Asteraceae Mitogenomes.
Posted
Two reads to rule them all: Nanopore long read-guided assembly of the iconic Christmas Island red crab, Gecarcoidea natalis (Pocock, 1888), mitochondrial genome and the challenges of AT-rich mitogenomes.
Posted
The cytoskeleton organizes germ nuclei with divergent fates and asynchronous cycles in a common cytoplasm during oogenesis in the chordate Oikopleura.
Posted
Archaeal RNA ligase is a homodimeric protein that catalyzes intramolecular ligation of single-stranded RNA and DNA.
Posted
Phosphorylation of the histone H3.3 variant in mitosis and meiosis of the urochordate Oikopleura dioica.
Posted
Histone gene complement, variant expression, and mRNA processing in a urochordate Oikopleura dioica that undergoes extensive polyploidization.
Posted
Assembly of Long Error-Prone Reads Using Repeat Graphs
Posted
High-throughput single-molecule optofluidic analysis.
Posted
The evolutionary landscape of the Rab family in chordates.
Posted
Developmental atlas of appendicularian Oikopleura dioica actins provides new insights into the evolution of the notochord and the cardio-paraxial muscle in chordates.
Posted
Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway.
Posted
Brachyury (T) expression in embryos of a larvacean urochordate, Oikopleura dioica, and the ancestral role of T.
Posted
Fast and accurate de novo genome assembly from long uncorrected reads.
Posted
Mapping and phasing of structural variation in patient genomes using nanopore sequencing.
Posted
Predator-prey interactions between the larvacean Oikopleura dioica and bacterioplankton in enclosed water columns
Posted
Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads.
Posted
Morphological identity of a taxonomically unassigned cytochrome c oxidase subunit I sequence from stomach contents of juvenile chum salmon determined using polymerase chain reaction
Posted
A survey of localized sequence rearrangements in human DNA.
Posted
Ocean acidification effects on mesozooplankton community development: Results from a long-term mesocosm experiment.
Posted
Morphology, ecology, and molecular biology of a new species of giant larvacean in the eastern North Pacific: Bathochordaeus mcnutti sp. nov.
Posted
Studies on the house building epithelium of Oikopleurid appendicularia (Tunicata): Early differentiation and description of the adult pattern of oikoplast cells
Posted
Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable Elements.
Posted
Cloning of the human cDNA for the U1 RNA-associated 70K protein.
Posted
Purifying mRNAs with a high-affinity eIF4E mutant identifies the short 3' poly(A) end phenotype.
Posted
RNA captor: a tool for RNA characterization.
Posted
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
Posted
Scaffolding of long read assemblies using long range contact information.
Posted
Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora.
Posted
Characterization of spliced leader trans-splicing in a photosynthetic rhizarian amoeba, Paulinella micropora, and its possible role in functional gene transfer.
Posted
The origin of Reissner's fibre in an appendicularian, Oikopleura dioica
Posted
Evolutionary volatile Cysteines and protein disorder in the fast evolving tunicate Oikopleura dioica.
Posted
Mitogenomics reveals two cryptic species in Ciona intestinalis.
Posted
Crossing the species barrier: genomic hotspots of introgression between two highly divergent Ciona intestinalis species.
Posted
Reissner’s Fiber Mechanisms: Some Common Denominators.
Posted
SCO-spondin is evolutionarily conserved in the central nervous system of the chordate phylum.
Posted
Distinguishing contemporary hybridization from past introgression with postgenomic ancestry-informative SNPs in strongly differentiated Ciona species.
Posted
Cryptic speciation in a model invertebrate chordate.
Posted
Polymorphism and divergence within the ascidian genus Ciona.
Posted
Genealogical relationships within and among shallow-water Ciona species (Ascidiacea)
Posted
Genomic approaches reveal unexpected genetic divergence within Ciona intestinalis.
Posted
Coupling molecular data and experimental crosses sheds light about species delineation: a case study with the genus Ciona.
Posted
Mechanism of the block to hybridization and selfing between the sympatric ascidians Ciona intestinalis and Ciona savignyi.
Posted
Detection of splice isoforms and rare intermediates using multiplexed primer extension sequencing.
Posted
Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species.
Posted
Peculiar patterns of amino acid substitution and conservation in the fast evolving tunicate Oikopleura dioica.
Posted
Evolutionary genomics of fast evolving tunicates.
Posted
Comparative metatranscriptomics reveals decline of a neustonic planktonic population
Posted
Ragout-a reference-assisted assembly tool for bacterial genomes.
Posted
Chromosome assembly of large and complex genomes using multiple references.
Posted
Species composition and horizontal distribution of the appendicularian community in waters adjacent to the Kuroshio in winter–early spring
Posted
Seasonal variations in abundance, size composition, biomass and production rate of Oikopleura dioica (Fol) (Tunicata: Appendicularia) in a temperate eutrophic inlet
Posted
A functional cellulose synthase from ascidian epidermis.
Posted
mRNA 5'-leader trans-splicing in the chordates.
Posted
The evolutionary origin of animal cellulose synthase.
Posted
Maternal and zygotic transcriptomes in the appendicularian, Oikopleura dioica: novel protein-encoding genes, intra-species sequence variations, and trans-spliced RNA leader.
Posted
Appendicularians (Urochordata)
Posted
Indian muntjac, Muntiacus muntjak: a deer with a low diploid chromosome number.
Posted
Carotenoid metabolic profiling and transcriptome-genome mining reveal functional equivalence among blue-pigmented copepods and appendicularia.
Posted
MinIONQC: fast and simple quality control for MinION sequencing data.
Posted
plyranges: a grammar of genomic data transformation.
Posted
HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly.
Posted
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.
Posted
Remodelling of the homeobox gene complement in the tunicate Oikopleura dioica.
Posted
NanoPARE: parallel analysis of RNA 5' ends from low-input RNA.
Posted
Viruses on the menu: The appendicularian Oikopleura dioica efficiently removes viruses from seawater
Posted
Mammoth grazers on the ocean's minuteness: a review of selective feeding using mucous meshes.
Posted
From the surface to the seafloor: How giant larvaceans transport microplastics into the deep sea.
Posted
New technology reveals the role of giant larvaceans in oceanic carbon cycling.
Posted
Split-alignment of genomes finds orthologies more accurately.
Posted
Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity.
Posted
Continuous monitoring of near-bottom mesoplankton communities in the East China Sea during a series of typhoons
Posted
Diatom bloom-derived biotoxins cause aberrant development and gene expression in the appendicularian chordate Oikopleura dioica
Posted
The Gelatinous Macroplankton Community at the Hatoma Knoll Hydrothermal Vent
Posted
The first definitive record of the giant larvacean, Bathochordaeus charon, since its original description in 1900 and a range extension to the northeast Pacific Ocean
Posted
Architecture of, and water circulation and flow rate in, the house of the planktonic tunicate Oikopleura labradoriensis
Posted
Long-distance cell migration during larval development in the appendicularian, Oikopleura dioica.
Posted
The Subchordal Cells of Oikopleura dioica and O. albicans (Appendicularia, Chordata)
Posted
Successful cryopreservation of coral larvae using vitrification and laser warming.
Posted
Variation graph toolkit improves read mapping by representing genetic variation in the reference.
Posted
On the origin and evolution of vertebrate olfactory receptor genes: comparative genome analysis among 23 chordate species.
Posted
Resource allocation between somatic growth and reproductive output in the pelagic chordate Oikopleura dioica allows opportunistic response to nutritional variation.
Posted
Internal and external morphology of adults of the appendicularian, Oikopleura dioica: an SEM study.
Posted
Rolling circle amplification shows a sinusoidal template length-dependent amplification bias.
Posted
Forming a tough shell via an intracellular matrix and cellular junctions in the tail epidermis of Oikopleura dioica (Chordata: Tunicata: Appendicularia).
Posted
A self‐cleaning biological filter: How appendicularians mechanically control particle adhesion and removal.
Posted
The house of Oikopleura dioica (Tunicata, Appendicularia): Structure and functions
Posted
NAD+-dependent synthesis of a 5'-phospho-ADP-ribosylated RNA/DNA cap by RNA 2'-phosphotransferase Tpt1.
Posted
Prevalence of Mutation-Prone Microhomology-Mediated End Joining in a Chordate Lacking the c-NHEJ DNA Repair Pathway.
Posted
Xdrop: targeted sequencing of long DNA molecules from low input samples using droplet sorting
Posted
Regulatory cocktail for dopaminergic neurons in a protovertebrate identified by whole-embryo single-cell transcriptomics.
Posted
Functional response of the appendicularian Oikopleura dioica.
Posted
Répartition des Appendiculaires au large des côtes de Californie
Posted
Development of the house secreting epithelium, a major innovation of tunicate larvaceans, involves multiple homeodomain transcription factors.
Posted
Preparation of megabase-sized DNA from a variety of organisms using the nuclei method for advanced genomics research.
Posted
Nucleosomes Inhibit Cas9 Endonuclease Activity in Vitro.
Posted
Self-biotinylation of DNA G-quadruplexes via intrinsic peroxidase activity.
Posted
Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler
Posted
A photoelectrochemical platform for the capture and release of rare single cells.
Posted
Targeted chromatin ligation, a robust epigenetic profiling technique for small cell numbers.
Posted
Zooplankton Species Groups in the North Pacific
Posted
Systems of mechanized and reactive droplets powered by multi-responsive surfactants.
Posted
OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica.
Posted
The Seasonal Distribution of the Appendicularia in the Region of San Diego, California
Posted
SLAM-ITseq: sequencing cell type-specific transcriptomes without cell sorting.
Posted
Splicing heterogeneity: separating signal from noise.
Posted
Splice site selection, rate of splicing, and alternative splicing on nascent transcripts.
Posted
TruePrime is a novel method for whole-genome amplification from single cells based on TthPrimPol.
Posted
From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy.
Posted
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Posted
BUSCO applications from quality assessments to gene prediction and phylogenomics.
Posted
Highly Contiguous Genome Assemblies of 15 Drosophila Species Generated Using Nanopore Sequencing.
Posted
Experimental evidence that thermal selection shapes mitochondrial genome evolution.
Posted
Genome-wide SNP analysis explains coral diversity and recovery in the Ryukyu Archipelago.
Posted
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage.
Posted
Training alignment parameters for arbitrary sequencers with LAST-TRAIN.
Posted
Functional specialization of cellulose synthase genes of prokaryotic origin in chordate larvaceans.
Posted
The crystalline phase of cellulose changes under developmental control in a marine chordate.
Posted
Deuterostome Genomics: Lineage-Specific Protein Expansions That Enabled Chordate Muscle Evolution.
Posted
An improved PCR method for walking in uncloned genomic DNA.
Posted
Highly efficient subtractive hybridization of cDNA
Posted
Acid-sensing ion channels emerged over 600 Mya and are conserved throughout the deuterostomes.
Posted
Evolutionary developmental biology and genomics.
Posted
High-resolution mapping of DNA polymerase fidelity using nucleotide imbalances and next-generation sequencing
Posted
Specialization of CDK1 and Cyclin B paralog functions in a coenocystic mode of oogenic meiosis.
Posted
Creating a functional single-chromosome yeast.
Posted
Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate.
Posted
Chromosome form and number in the larvacea
Posted
Untersuchungen über die Gehäusebildung bei Appendicularien (Oikopleura dioica Fol)
Posted
Appendicularia of Japanese Waters
Posted
Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing.
Posted
Coelimination and Survival in Gene Network Evolution: Dismantling the RA-Signaling in a Chordate.
Posted
Unamplified cap analysis of gene expression on a single-molecule sequencer.
Posted
Single-site DNA cleavage by Type III restriction endonuclease requires a site-bound enzyme and a trans-acting enzyme that are ATPase-activated.
Posted
Oikopleura dioica alcohol dehydrogenase class 3 provides new insights into the evolution of retinoic acid synthesis in chordates.
Posted
Sex-specific chromatin landscapes in an ultra-compact chordate genome.
Posted
High Rate of Infection by Only Oncogenic Human Papillomavirus in Amerindians.
Posted
Ghost cytometry.
Posted
Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy.
Posted
Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.
Posted
C-BERST: defining subnuclear proteomic landscapes at genomic elements with dCas9-APEX2.
Posted
Discovery of proteins associated with a predefined genomic locus via dCas9-APEX-mediated proximity labeling.
Posted
Multiplexed precision genome editing with trackable genomic barcodes in yeast.
Posted
Genome-scale engineering of Saccharomyces cerevisiae with single-nucleotide precision.
Posted
The genome-wide rate and spectrum of spontaneous mutations differ between haploid and diploid yeast.
Posted
The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements.
Posted
Transcription of functionally related constitutive genes is not coordinated.
Posted
STRT-seq-2i: dual-index 5' single cell and nucleus RNA-seq on an addressable microwell array.
Posted
Incorporation of non-natural nucleotides into template-switching oligonucleotides reduces background and improves cDNA synthesis from very small RNA samples.
Posted
Compounds that enhance the tailing activity of Moloney murine leukemia virus reverse transcriptase.
Posted
Efficient N-tailing of blunt DNA ends by Moloney murine leukemia virus reverse transcriptase.
Posted
Novel blunt-end addition reactions catalyzed by DNA polymerase I of Escherichia coli.
Posted
Marked infidelity of human immunodeficiency virus type 1 reverse transcriptase at RNA and DNA template ends.
Posted
Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI).
Posted
A new method to prevent carry-over contaminations in two-step PCR NGS library preparations.
Posted
De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution.
Posted
Current techniques for single-cell lysis.
Posted
Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida.
Posted
Tunicates and not cephalochordates are the closest living relatives of vertebrates.
Posted
An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models.
Posted
A phylogenomic framework and timescale for comparative studies of tunicates.
Posted
Hypervariable and highly divergent intron-exon organizations in the chordate Oikopleura dioica.
Posted
Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis.
Posted
Genomic overview of mRNA 5'-leader trans-splicing in the ascidian Ciona intestinalis.
Posted
CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity.
Posted
Evidence for a centrosome-attracting body like structure in germ-soma segregation during early development, in the urochordate Oikopleura dioica.
Posted
Genome annotation by high-throughput 5' RNA end determination.
Posted
Detecting RNA base methylations in single cells by in situ hybridization
Posted
DNA interference-mediated screening of maternal factors in the chordate Oikopleura dioica.
Posted
Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate.
Posted
Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq.
Posted
Reverse transcriptase adds nontemplated nucleotides to cDNAs during 5'-RACE and primer extension.
Posted
Targeted reduction of highly abundant transcripts using pseudo-random primers.
Posted
Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome.
Posted
Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs.
Posted
Trans-Splicing and Operons in Metazoans: Translational Control in Maternally Regulated Development and Recovery from Growth Arrest.
Posted
An Upper Limit on the Functional Fraction of the Human Genome.
Posted
Cell-type specific sequencing of microRNAs from complex animal tissues.
Posted
Evolved Cas9 variants with broad PAM compatibility and high DNA specificity.
Posted
Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain.
Posted
Precise Cas9 targeting enables genomic mutation prevention.
Posted
The evolving proteome of a complex extracellular matrix, the Oikopleura house.
Posted
Increased fitness of a key appendicularian zooplankton species under warmer, acidified seawater conditions.
Posted
Reversible effects of nuclear membrane permeabilization on DNA replication: evidence for a positive licensing factor.
Posted
The human noncoding genome defined by genetic diversity.
Posted
Conservation and divergence of chemical defense system in the tunicate Oikopleura dioica revealed by genome wide response to two xenobiotics.
Posted
Gentle masking of low-complexity sequences improves homology search.
Posted
Miniature genome in the marine chordate Oikopleura dioica.
Posted
The chemistrode: a droplet-based microfluidic device for stimulation and recording with high temporal, spatial, and chemical resolution.
Posted
Isolation, incubation, and parallel functional testing and identification by FISH of rare microbial single-copy cells from multi-species mixtures using the combination of chemistrode and stochastic confinement.
Posted
Spliced-Leader RNA trans Splicing in a Chordate, Oikopleura dioica, with a Compact Genome.
Posted
scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells.
Posted
Controlled synthesis of cell-laden microgels by radical-free gelation in droplet microfluidics.
Posted
Capture and Amplification by Tailing and Switching (CATS). An ultrasensitive ligation-independent method for generation of DNA libraries for deep sequencing from picogram amounts of DNA and RNA.
Posted
Low-cell-number, single-tube amplification (STA) of total RNA revealed transcriptome changes from pluripotency to endothelium.
Posted
A simple and fast method for profiling microRNA expression from low-input total RNA by microarray.
Posted
Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements.
Posted
Human papillomavirus genome integration in squamous carcinogenesis: what have next generation sequencing studies taught us?
Posted
Transcription of mammalian messenger RNAs by a nuclear RNA polymerase of mitochondrial origin.
Posted
Direct amplification of single-stranded DNA for pyrosequencing using linear-after-the-exponential (LATE)-PCR.
Posted
Improvements of rolling circle amplification (RCA) efficiency and accuracy using Thermus thermophilus SSB mutant protein.
Posted
Multi-targeted priming for genome-wide gene expression assays.
Posted
Distinct populations of primary and secondary effectors during RNAi in C. elegans.
Posted
High-throughput identification of RNA nuclear enrichment sequences.
Posted
Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias.
Posted
Microfluidic devices for high-throughput gene expression profiling of single hESC-derived neural stem cells.
Posted
A new mathematical model for relative quantification in real-time RT-PCR.
Posted
Global amplification of cDNA from limiting amounts of tissue. An improved method for gene cloning and analysis
Posted
Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data.
Posted
General statistics of stochastic process of gene expression in eukaryotic cells.
Posted
Reversal of T4 RNA ligase.
Posted
Ligation of single-stranded oligodeoxyribonucleotides by T4 RNA ligase.
Posted
T4 RNA ligase: substrate chain length requirements.
Posted
5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing.
Posted
Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage.
Posted
Emergence of scaling in random networks
Posted
Specificity and stability in topology of protein networks.
Posted
Lethality and centrality in protein networks.
Posted
Community structure in social and biological networks.
Posted
Modular organization of cellular networks.
Posted
Genomic analysis of gene expression relationships in transcriptional regulatory networks.
Posted
Migration-based selections of antibodies that convert bone marrow into trafficking microglia-like cells that reduce brain amyloid β.
Posted
Evidence for dynamically organized modularity in the yeast protein-protein interaction network.
Posted
Conservation and coevolution in the scale-free human gene coexpression network.
Posted
Novel concept of the smart NIR-light-controlled drug release of black phosphorus nanostructure for cancer therapy.
Posted
Genomic analysis of regulatory network dynamics reveals large topological changes.
Posted
Self-similarity of complex networks.
Posted
Accelerating networks in biology, engineering and society.
Posted
Functional cartography of complex metabolic networks.
Posted
An evolutionary and functional assessment of regulatory network motifs.
Posted
Team assembly mechanisms determine collaboration network structure and team performance.
Posted
A network analysis of committees in the U.S. House of Representatives.
Posted
Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators.
Posted
Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli.
Posted
The worldwide air transportation network: Anomalous centrality, community structure, and cities' global roles.
Posted
Empirical analysis of an evolving social network.
Posted
Optimizing T4 DNA polymerase conditions enhances the efficiency of one-step sequence- and ligation-independent cloning.
Posted
Poly(A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation.
Posted
Synthetic transcription elongation factors license transcription across repressive chromatin.
Posted
Inherited Chromosomally Integrated Human Herpesvirus 6 Genomes Are Ancient, Intact, and Potentially Able To Reactivate from Telomeres.
Posted
RNA ligase structures reveal the basis for RNA specificity and conformational changes that drive ligation forward.
Posted
T4 RNA Ligase 2 truncated active site mutants: improved tools for RNA analysis
Posted
Modularity and community structure in networks.
Posted
Genomic analysis of the hierarchical structure of regulatory networks.
Posted
Relating three-dimensional structures to protein networks provides evolutionary insights.
Posted
The product space conditions the development of nations.
Posted
Uncovering the overlapping community structure of complex networks in nature and society.
Posted
Direct labeling of RNA with multiple biotins allows sensitive expression profiling of acute leukemia class predictor genes.
Posted
Probe generation directly from small numbers of cells for DNA microarray studies.
Posted
Quantitative analysis of mRNA amplification by in vitro transcription.
Posted
Linear mRNA amplification from as little as 5 ng total RNA for global gene expression analysis.
Posted
Comparative evaluation of linear and exponential amplification techniques for expression profiling at the single-cell level.
Posted
RNA amplification strategies for small sample populations.
Posted
Combined histochemical staining, RNA amplification, regional, and single cell cDNA analysis within the hippocampus.
Posted
Regulation of average length of complex PCR product.
Posted
Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides.
Posted
A blocked structure at the 5' terminus of mRNA from cytoplasmic polyhedrosis virus.
Posted
Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library.
Posted
Oligodeoxyribonucleotide ligation to single-stranded cDNAs: a new tool for cloning 5' ends of mRNAs and for constructing cDNA libraries by in vitro amplification.
Posted
Synthesis of full-length cDNA using DNA-capped mRNA.
Posted
Improved full-length cDNA production based on RNA tagging by T4 DNA ligase.
Posted
Identification and prevention of a GC content bias in SAGE libraries.
Posted
The significance of digital gene expression profiles.
Posted
The comparison of gene expression from multiple cDNA libraries.
Posted
aRNA-longSAGE: a new approach to generate SAGE libraries from microdissected cells.
Posted
Comprehensive transcript analysis in small quantities of mRNA by SAGE-lite.
Posted
Identification of the mismatch repair genes PMS2 and MLH1 as p53 target genes by using serial analysis of binding elements.
Posted
A code for transcription initiation in mammalian genomes.
Posted
The synthesis of oligodeoxyribonucleotides using RNA ligase.
Posted
The use of ammonium acetate in the precipitation of ribonucleic acid.
Posted
Ethanol precipitation of DNA with linear polyacrylamide as carrier.
Posted
Hexamine cobalt chloride promotes intermolecular ligation of blunt end DNA fragments by T4 DNA ligase.
Posted
Protection of megabase DNA from shearing.
Posted
Improved DNA sequencing accuracy and detection of heterozygous alleles using manganese citrate and different fluorescent dye terminators.
Posted
Optimization of in vitro transcription and full-length cDNA synthesis using the T4 bacteriophage gene 32 protein.
Posted
Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D.
Posted
Man-made cell-like compartments for molecular evolution.
Posted
STABLE: protein-DNA fusion system for screening of combinatorial protein libraries in vitro.
Posted
Directed evolution of polymerase function by compartmentalized self-replication.
Posted
Microbead display by in vitro compartmentalisation: selection for binding using flow cytometry.
Posted
Single-molecule PCR using water-in-oil emulsion.
Posted
DNA display for in vitro selection of diverse peptide libraries.
Posted
In vitro compartmentalization by double emulsions: sorting and gene enrichment by fluorescence activated cell sorting.
Posted
Altering the sequence specificity of HaeIII methyltransferase by directed evolution using in vitro compartmentalization.
Posted
Generic expansion of the substrate spectrum of a DNA polymerase by directed evolution.
Posted
In vitro selection of restriction endonucleases by in vitro compartmentalization.
Posted
Covalent DNA display as a novel tool for directed evolution of proteins in vitro.
Posted
Directed evolution of protein inhibitors of DNA-nucleases by in vitro compartmentalization (IVC) and nano-droplet delivery.
Posted
Direct selection of trans-acting ligase ribozymes by in vitro compartmentalization.
Posted
BEAMing up for detection and quantification of rare sequence variants.
Posted
Selection of ribozymes that catalyse multiple-turnover Diels-Alder cycloadditions by using in vitro compartmentalization.
Posted
Cell-free selection of zinc finger DNA-binding proteins using in vitro compartmentalization.
Posted
RNA maps reveal new RNA classes and a possible function for pervasive transcription.
Posted
Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Posted
The transcriptional landscape of the mammalian genome.
Posted
Global identification of human transcribed sequences with genome tiling arrays.
Posted
Clustering of DNA sequences in human promoters.
Posted
Analysis of human transcriptomes.
Posted
An abundance of bidirectional promoters in the human genome.
Posted
5' Long serial analysis of gene expression (LongSAGE) and 3' LongSAGE for transcriptome characterization and genome annotation.
Posted
Increasing the efficiency of SAGE adaptor ligation by directed ligation chemistry.
Posted
Psychrophilic proteases dramatically reduce single cell RNA-seq artifacts: A molecular atlas of kidney development.
Posted
Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries.
Posted
Simple cDNA normalization using kamchatka crab duplex-specific nuclease.
Posted
Purification and properties of bacteriophage T4-induced RNA ligase.
Posted
Synthesis and reactivity of intermediates formed in the T4 RNA ligase reaction.
Posted
Donor activation in the T4 RNA ligase reaction.
Posted
Reactions at the termini of tRNA with T4 RNA ligase.
Posted
Unambiguous identification of miRNA:target site interactions by different types of ligation reactions.
Posted
Bacteriophage T4 RNA ligase. Reaction intermediates and interaction of substrates.
Posted
Effect of manganese ions on the incorporation of dideoxynucleotides by bacteriophage T7 DNA polymerase and Escherichia coli DNA polymerase I.
Posted
Archaebacterial DNA polymerases tightly bind uracil-containing DNA.
Posted
The mitochondrial RNA ligase from Leishmania tarentolae can join RNA molecules bridged by a complementary RNA.
Posted
Transcriptomic Analysis of Ribosome-Bound mRNA in Cortical Neurites In Vivo.
Posted
Engineering human PrimPol into an efficient RNA-dependent-DNA primase/polymerase.
Posted
Alkaline phosphatase from the Antarctic strain TAB5. Properties and psychrophilic adaptations.
Posted
Engineering the properties of a cold active enzyme through rational redesign of the active site.
Posted
Archaeal dUTPase enhances PCR amplifications with archaeal DNA polymerases by preventing dUTP incorporation.
Posted
Purification of histidine-tagged T4 RNA ligase from E. coli.
Posted
Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains.
Posted
Structure-function analysis of T4 RNA ligase 2.
Posted
Discovery and characterization of a thermostable bacteriophage RNA ligase homologous to T4 RNA ligase 1.
Posted
Structure and mechanism of RNA ligase.
Posted
Characterization of bacteriophage KVP40 and T4 RNA ligase 2.
Posted
Practical and general synthesis of 5'-adenylated RNA (5'-AppRNA).
Posted
RNA substrate specificity and structure-guided mutational analysis of bacteriophage T4 RNA ligase 2.
Posted
Dual mechanisms whereby a broken RNA end assists the catalysis of its repair by T4 RNA ligase 2.
Posted
Isolation and characterization of a thermostable RNA ligase 1 from a Thermus scotoductus bacteriophage TS2126 with good single-stranded DNA ligation properties.
Posted
Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins.
Posted
Novel 3'-ribonuclease and 3'-phosphatase activities of the bacterial non-homologous end-joining protein, DNA ligase D.
Posted
The wild-type Schizosaccharomyces pombe mat1 imprint consists of two ribonucleotides.
Posted
A second, non-canonical RNA-dependent RNA polymerase in SARS coronavirus.
Posted
XRCC4:DNA ligase IV can ligate incompatible DNA ends and can ligate across gaps.
Posted
mRNA cap analogues substituted in the tetraphosphate chain with CX2: identification of O-to-CCl2 as the first bridging modification that confers resistance to decapping without impairing translation.
Posted
A simple and efficient method for direct cloning of PCR products using ddT-tailed vectors.
Posted
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing.
Posted
Genome-scale activation screen identifies a lncRNA locus regulating a gene neighbourhood.
Posted
cDNA library construction from a small amount of RNA: adaptor-ligation approach for two-round cRNA amplification using T7 and SP6 RNA polymerases.
Posted
Public antibodies to malaria antigens generated by two LAIR1 insertion modalities.
Posted
1274 full-open reading frames of transcripts expressed in the developing mouse nervous system.
Posted
Serial analysis of gene expression in a single cell.
Posted
Expression profiling of single cells using 3 prime end amplification (TPEA) PCR.
Posted
Kv4.2 mRNA abundance and A-type K(+) current amplitude are linearly related in basal ganglia and basal forebrain neurons.
Posted
Identification of cell-specific messenger ribonucleic acids in oxytocinergic and vasopressinergic magnocellular neurons in rat supraoptic nucleus by single-cell differential hybridization.
Posted
Polylox barcoding reveals haematopoietic stem cell fates realized in vivo.
Posted
Modified 3'-end amplification PCR for gene expression analysis in single cells.
Posted
Single-cell microarray analysis in hippocampus CA1: demonstration and validation of cellular heterogeneity.
Posted
Toehold switches: de-novo-designed regulators of gene expression.
Posted
Hypothalamic stem cells control ageing speed partly through exosomal miRNAs.
Posted
Heritable L1 retrotransposition in the mouse primordial germline and early embryo.
Posted
Gene discovery in genetically labeled single dopaminergic neurons of the retina.
Posted
An efficient strategy to isolate full-length cDNAs based on an mRNA cap retention procedure (CAPture).
Posted
Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels.
Posted
Features of genomic organization in a nucleotide-resolution molecular model of the Escherichia coli chromosome.
Posted
A genetically encoded tag for correlated light and electron microscopy of intact cells, tissues, and organisms.
Posted
ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells.
Posted
Amplification and analysis of cDNA generated from a single cell by 5'-RACE: application to isolation of antibody heavy and light chain variable gene sequences from single B cells.
Posted
Insight into the mechanism of nonenzymatic RNA primer extension from the structure of an RNA-GpppG complex.
Posted
CRISPR-Cas encoding of a digital movie into the genomes of a population of living bacteria.
Posted
Triazole-linked analogue of deoxyribonucleic acid ((TL)DNA): design, synthesis, and double-strand formation with natural DNA.
Posted
NicE-seq: high resolution open chromatin profiling.
Posted
Nm-seq maps 2'-O-methylation sites in human mRNA with base precision.
Posted
A synthetic biology approach to integrative high school STEM training.
Posted
Artificial Intelligence to Win the Nobel Prize and Beyond: Creating the Engine for Scientific Discovery.
Posted
A maternal-effect selfish genetic element in Caenorhabditis elegans.
Posted
Alternative TSSs are co-regulated in single cells in the mouse brain.
Posted
Optimized flow cytometric analysis of central nervous system tissue reveals novel functional relationships among cells expressing CD133, CD15, and CD24.
Posted
DNase I behaves as a transcription factor which modulates Fas expression in human cells.
Posted
Cell fixation and preservation for droplet-based single-cell transcriptomics.
Posted
Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression.
Posted
Integration of CpG-free DNA induces de novo methylation of CpG islands in pluripotent stem cells.
Posted
Negative selection in humans and fruit flies involves synergistic epistasis.
Posted
Impact of cytosine methylation on DNA binding specificities of human transcription factors.
Posted
De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly.
Posted
Arm-specific cleavage and mutation during reverse transcription of 2΄,5΄-branched RNA by Moloney murine leukemia virus reverse transcriptase.
Posted
Papilloma-pseudovirus eradicates intestinal tumours and triples the lifespan of Apc(Min/+) mice.
Posted
NanoCAGE: A Method for the Analysis of Coding and Noncoding 5'-Capped Transcriptomes
Posted
Power analysis of single-cell RNA-sequencing experiments.
Posted
Deep-sea vent phage DNA polymerase specifically initiates DNA synthesis in the absence of primers.
Posted
Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos.
Posted
Intragenic DNA methylation prevents spurious transcription initiation.
Posted
A method for high-throughput production of sequence-verified DNA libraries and strain collections.
Posted
Viral E6 is overexpressed via high viral load in invasive cervical cancer with episomal HPV16.
Posted
Short structured RNAs with low GC content are selectively lost during extraction from a small number of cells.
Posted
Single-cell chromatin accessibility reveals principles of regulatory variation.
Posted
The human initiator is a distinct and abundant element that is precisely positioned in focused core promoters.
Posted
Reversible methylation of m6Am in the 5' cap controls mRNA stability.
Posted
mRNA capping: biological functions and applications.
Posted
Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing.
Posted
Droplet barcoding for massively parallel single-molecule deep sequencing.
Posted
Genome-wide uniformity of human 'open' pre-initiation complexes.
Posted
A cost effective 5' selective single cell transcriptome profiling approach with improved UMI design.
Posted
Presence and expression of human papillomavirus sequences in human cervical carcinoma cell lines.
Posted
Tumor antigen and human chorionic gonadotropin in CaSki cells: a new epidermoid cervical cancer cell line.
Posted
Tandemly Integrated HPV16 Can Form a Brd4-Dependent Super-Enhancer-Like Element That Drives Transcription of Viral Oncogenes.
Posted
NaOH concentration and streptavidin bead type are key factors for optimal DNA aptamer strand separation and isolation.
Posted
A highly conserved program of neuronal microexons is misregulated in autistic brains.
Posted
Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons.
Posted
Locked nucleic acid pentamers as universal PCR primers for genomic DNA amplification.
Posted
Selective single cell isolation for genomics using microraft arrays.
Posted
Disruption of promoter memory by synthesis of a long noncoding RNA.
Posted
UMI-4C for quantitative and targeted chromosomal contact profiling.
Posted
Dense transcript profiling in single cells by image correlation decoding.
Posted
Nanoscale imaging of RNA with expansion microscopy.
Posted
Regulation of alternative splicing at the single-cell level.
Posted
Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis.
Posted
Pervasive isoform-specific translational regulation via alternative transcription start sites in mammals.
Posted
Ubiquitously expressed genes participate in cell-specific functions via alternative promoter usage
Posted
Identification of host transcriptional networks showing concentration-dependent regulation by HPV16 E6 and E7 proteins in basal cervical squamous epithelial cells.
Posted
Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates.
Posted
The next generation of target capture technologies - large DNA fragment enrichment and sequencing determines regional genomic variation of high complexity.
Posted
Global transcript structure resolution of high gene density genomes through multi-platform data integration.
Posted
Biochemical identification of A-to-I RNA editing sites by the inosine chemical erasing (ICE) method.
Posted
A federated ecosystem for sharing genomic, clinical data.
Posted
Loss of Dependence on Continued Expression of the Human Papillomavirus 16 E7 Oncogene in Cervical Cancers and Precancerous Lesions Arising in Fanconi Anemia Pathway-Deficient Mice.
Posted
The paraffin-embedded RNA metric (PERM) for RNA isolated from formalin-fixed, paraffin-embedded tissue.
Posted
RNA-Seq following PCR-based sorting reveals rare cell transcriptional signatures.
Posted
Template-independent ligation of single-stranded DNA by T4 DNA ligase.
Posted
DNA detection using recombination proteins.
Posted
Cis-regulatory architecture of a brain signaling center predates the origin of chordates.
Posted
Bioanalyzer chips can be used interchangeably for many analyses of DNA or RNA.
Posted
Identification and characterization of extensive intra-molecular associations between 3'-UTRs and their ORFs.
Posted
cual-id: Globally Unique, Correctable, and Human-Friendly Sample Identifiers for Comparative Omics Studies
Posted
DTIE, a novel core promoter element that directs start site selection in TATA-less genes.
Posted
Sizing femtogram amounts of dsDNA by single-molecule counting.
Posted
Enhancer elements.
Posted
Structural basis for m7G recognition and 2'-O-methyl discrimination in capped RNAs by the innate immune receptor RIG-I.
Posted
Differential priming of RNA templates during cDNA synthesis markedly affects both accuracy and reproducibility of quantitative competitive reverse-transcriptase PCR.
Posted
Olfactory sensory neurons transiently express multiple olfactory receptors during development.
Posted
Temperature-induced variation in gene expression burst size in metazoan cells.
Posted
Novel 5'/3'RACE Method for Amplification and Determination of Single-Stranded RNAs Through Double-Stranded RNA (dsRNA) Intermediates.
Posted
Fixed single-cell transcriptomic characterization of human radial glial diversity.
Posted
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Posted
Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins.
Posted
An essential cell cycle regulation gene causes hybrid inviability in Drosophila.
Posted
Selective small-molecule inhibition of an RNA structural element.
Posted
ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis.
Posted
Application of an RNA amplification method for reliable single-cell transcriptome analysis.
Posted
The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition.
Posted
Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells.
Posted
Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells.
Posted
Determining exon connectivity in complex mRNAs by nanopore sequencing.
Posted
Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state.
Posted
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters.
Posted
FDF-PAGE: a powerful technique revealing previously undetected small RNAs sequestered by complementary transcripts.
Posted
Efficient and quantitative high-throughput tRNA sequencing.
Posted
ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments.
Posted
Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments.
Posted
Nanoparticle vesicle encoding for imaging and tracking cell populations.
Posted
High-throughput analysis of yeast replicative aging using a microfluidic system.
Posted
NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites.
Posted
Re-use of commercial microfluidics chips for DNA, RNA, and protein electrophoresis.
Posted
Rsu1 regulates ethanol consumption in Drosophila and humans.
Posted
Combining protein and mRNA quantification to decipher transcriptional regulation.
Posted
Structure of silent transcription intervals and noise characteristics of mammalian genes.
Posted
Assessing the detection of human papillomavirus late mRNA in liquid base cytology samples for risk stratification of cervical disease.
Posted
UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation.
Posted
Scalable microfluidics for single-cell RNA printing and sequencing.
Posted
Single-cell polyadenylation site mapping reveals 3' isoform choice variability.
Posted
Biases in Illumina transcriptome sequencing caused by random hexamer priming.
Posted
Consistent errors in first strand cDNA due to random hexamer mispriming.
Posted
Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures.
Posted
Global analysis of RNA cleavage by 5′-hydroxyl RNA sequencing.
Posted
Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.
Posted
G&T-seq: parallel sequencing of single-cell genomes and transcriptomes.
Posted
Epigenetics. Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing.
Posted
Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness
Posted
Quantitative transcriptomics using designed primer-based amplification.
Posted
CAP+ selection: A combined chemical-enzymatic strategy for efficient eukaryotic mRNA enrichment via the 5' cap.
Posted
Conditions for the selective synthesis of DNA complementary to template RNA.
Posted
RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
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Single Cell Transcriptome Amplification with MALBAC.
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Normalization of RNA-seq data using factor analysis of control genes or samples.
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A simple method for encapsulating single cells in alginate microspheres allows for direct PCR and whole genome amplification.
Posted
NAD captureSeq indicates NAD as a bacterial cap for a subset of regulatory RNAs.
Posted
Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA.
Posted
Assessing the prevalence of mycoplasma contamination in cell culture via a survey of NCBI's RNA-seq archive.
Posted
Genetic variation of human papillomavirus type 16 in individual clinical specimens revealed by deep sequencing.
Posted
m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation.
Posted
Combinatorial labeling of single cells for gene expression cytometry.
Posted
Modeling bi-modality improves characterization of cell cycle on gene expression in single cells.
Posted
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells.
Posted
3' terminal diversity of MRP RNA and other human noncoding RNAs revealed by deep sequencing.
Posted
Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis.
Posted
Application of an asymmetric helical tube reactor for fast identification of gene transcripts of pathogenic viruses by micro flow-through PCR.
Posted
Non-random integration of the HPV genome in cervical cancer.
Posted
Digital-Direct-RT-PCR: a sensitive and specific method for quantification of CTC in patients with cervical carcinoma.
Posted
Increasing population growth by asymmetric segregation of a limiting resource during cell division.
Posted
Regional modulation of a stochastically expressed factor determines photoreceptor subtypes in the Drosophila retina.
Posted
Visualization of dynamics of single endogenous mRNA labeled in live mouse.
Posted
Transcriptional profiling of cells sorted by RNA abundance.
Posted
The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity.
Posted
Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations.
Posted
Genome sequencing of normal cells reveals developmental lineages and mutational processes.
Posted
High-resolution analysis with novel cell-surface markers identifies routes to iPS cells.
Posted
Cell cycle dependent oscillatory expression of estrogen receptor-α links Pol II elongation to neoplastic transformation.
Posted
Cell cycle population effects in perturbation studies.
Posted
Accelerated chromatin biochemistry using DNA-barcoded nucleosome libraries.
Posted
Digital encoding of cellular mRNAs enabling precise and absolute gene expression measurement by single-molecule counting.
Posted
Sensitive, multiplex and direct quantification of RNA sequences using a modified RASL assay.
Posted
Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex.
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Functionally diverse dendritic mRNAs rapidly associate with ribosomes following a novel experience.
Posted
Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.
Posted
The ground state of embryonic stem cell self-renewal.
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Control of ground-state pluripotency by allelic regulation of Nanog.
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Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency.
Posted
TRF2, but not TBP, mediates the transcription of ribosomal protein genes.
Posted
Human tRNA synthetase catalytic nulls with diverse functions.
Posted
Reconfigurable microfluidic hanging drop network for multi-tissue interaction and analysis.
Posted
Trpc2-Expressing Sensory Neurons in the Main Olfactory Epithelium of the Mouse.
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Four methods of preparing mRNA 5' end libraries using the illumina sequencing platform.
Posted
Low-grade chromosomal mosaicism in human somatic and embryonic stem cell populations.
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Second-strand cDNA synthesis with E. coli DNA polymerase I and RNase H: the fate of information at the mRNA 5' terminus and the effect of E. coli DNA ligase.
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mTORC1 controls the adaptive transition of quiescent stem cells from G0 to G(Alert)
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Transplanted terminally differentiated induced pluripotent stem cells are accepted by immune mechanisms similar to self-tolerance.
Posted
biobambam: tools for read pair collation based algorithms on BAM files
Posted
Identification of cell cycle-regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors.
Posted
Screening for noise in gene expression identifies drug synergies.
Posted
PKR is activated by cellular dsRNAs during mitosis and acts as a mitotic regulator.
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Controlling low rates of cell differentiation through noise and ultrahigh feedback.
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Molecular indexing enables quantitative targeted RNA sequencing and reveals poor efficiencies in standard library preparations.
Posted
Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs.
Posted
Homeostatic control of polo-like kinase-1 engenders non-genetic heterogeneity in G2 checkpoint fidelity and timing.
Posted
Generation of organized germ layers from a single mouse embryonic stem cell.
Posted
Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes.
Posted
MuLV-related endogenous retroviral elements and Flt3 participate in aberrant end-joining events that promote B-cell leukemogenesis.
Posted
Pronounced cohabitation of active immunoglobulin genes from three different chromosomes in transcription factories during maximal antibody synthesis.
Posted
Sensitivity and accuracy of quantitative real-time polymerase chain reaction using SYBR green I depends on cDNA synthesis conditions.
Posted
HJURP is a cell-cycle-dependent maintenance and deposition factor of CENP-A at centromeres.
Posted
Towards error-free profiling of immune repertoires.
Posted
An mRNA is capped by a 2', 5' lariat catalyzed by a group I-like ribozyme.
Posted
Microfluidic high-throughput culturing of single cells for selection based on extracellular metabolite production or consumption.
Posted
Targeted sequencing for gene discovery and quantification using RNA CaptureSeq.
Posted
Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms.
Posted
Noninvasive in vivo monitoring of tissue-specific global gene expression in humans.
Posted
Parallel T-cell cloning and deep sequencing of human MAIT cells reveal stable oligoclonal TCRβ repertoire.
Posted
Host cell responses to persistent mycoplasmas--different stages in infection of HeLa cells with Mycoplasma hominis.
Posted
Stretched cell cycle model for proliferating lymphocytes.
Posted
The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line.
Posted
The majority of viral-cellular fusion transcripts in cervical carcinomas cotranscribe cellular sequences of known or predicted genes.
Posted
The TRF1-binding protein TERB1 promotes chromosome movement and telomere rigidity in meiosis.
Posted
Hybridization of single-stranded DNA targets to immobilized complementary DNA probes: comparison of hairpin versus linear capture probes.
Posted
Tailoring DNA structure to increase target hybridization kinetics on surfaces.
Posted
Cdk1 inactivation terminates mitotic checkpoint surveillance and stabilizes kinetochore attachments in anaphase
Posted
Landscape of genomic alterations in cervical carcinomas.
Posted
Dedifferentiation of Neurons Precedes Tumor Formation in lola Mutants.
Posted
Isolated nuclei adapt to force and reveal a mechanotransduction pathway in the nucleus.
Posted
Single-molecule dynamics of enhanceosome assembly in embryonic stem cells.
Posted
Identification of Transcriptional and Metabolic Programs Related to Mammalian Cell Size.
Posted
Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein coding RNAs.
Posted
Visualizing spatiotemporal dynamics of multicellular cell-cycle progression.
Posted
U1 snRNP determines mRNA length and regulates isoform expression.
Posted
Highly Multiplexed Subcellular RNA Sequencing in Situ.
Posted
Control of Cdc28 CDK1 by a Stress-Induced lncRNA.
Posted
Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.
Posted
Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.
Posted
Two independent transcription initiation codes overlap on vertebrate core promoters
Posted
The dependence of cell-free protein synthesis in E. coli upon naturally occurring or synthetic polyribonucleotides.
Posted
Nonstochastic Reprogramming from a Privileged Somatic Cell State.
Posted
An antisense promoter in mouse L1 retrotransposon open reading frame-1 initiates expression of diverse fusion transcripts and limits retrotransposition.
Posted
NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies.
Posted
Long Noncoding RNA NEAT1-Dependent SFPQ Relocation from Promoter Region to Paraspeckle Mediates IL8 Expression upon Immune Stimuli.
Posted
lncRNA recruits RNAi and the exosome to dynamically regulate pho1 expression in response to phosphate levels in fission yeast.
Posted
Aprataxin resolves adenylated RNA-DNA junctions to maintain genome integrity.
Posted
Periodic mRNA synthesis and degradation co-operate during cell cycle gene expression.
Posted
A Tetrahymena Piwi bound to mature tRNA 3' fragments activates the exonuclease Xrn2 for RNA processing in the nucleus.
Posted
The evolution of lncRNA repertoires and expression patterns in tetrapods.
Posted
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs.
Posted
Embryonic stem cell potency fluctuates with endogenous retrovirus activity.
Posted
Circular RNAs are abundant, conserved, and associated with ALU repeats.
Posted
Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing.
Posted
Population-specific expression analysis (PSEA) reveals molecular changes in diseased brain.
Posted
Large-scale mapping of branchpoints in human pre-mRNA transcripts in vivo.
Posted
Interfacial assembly of protein-polymer nano-conjugates into stimulus-responsive biomimetic protocells.
Posted
High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing.
Posted
Spatial organization of RNA polymerase II inside a mammalian cell nucleus revealed by reflected light-sheet superresolution microscopy.
Posted
Base Preferences in Non-Templated Nucleotide Incorporation by MMLV-Derived Reverse Transcriptases.
Posted
From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.
Posted
Cell-cycle control of developmentally regulated transcription factors accounts for heterogeneity in human pluripotent cells.
Posted
Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing.
Posted
High-resolution mapping of the spatial organization of a bacterial chromosome.
Posted
Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells.
Posted
Quantitative single-cell RNA-seq with unique molecular identifiers.
Posted
CTLA-4 controls the thymic development of both conventional and regulatory T cells through modulation of the TCR repertoire.
Posted
The shared genomic architecture of human nucleolar organizer regions.
Posted
Identification of genes periodically expressed in the human cell cycle and their expression in tumors.
Posted
The TCR repertoires of regulatory and conventional T cells specific for the same foreign antigen are distinct.
Posted
RNA-sequencing from single nuclei.
Posted
Non-biased and efficient global amplification of a single-cell cDNA library.
Posted
High Dub3 Expression in Mouse ESCs Couples the G1/S Checkpoint to Pluripotency.
Posted
Cell-cycle regulated transcription associates with DNA replication timing in yeast and human.
Posted
Temporal dynamics and transcriptional control using single-cell gene expression analysis.
Posted
Measuring chromatin interaction dynamics on the second time scale at single-copy genes.
Posted
A single-molecule long-read survey of the human transcriptome.
Posted
Emergence of macroscopic directed motion in populations of motile colloids.
Posted
Deterministic direct reprogramming of somatic cells to pluripotency.
Posted
Visualizing developmentally programmed endoreplication in mammals using ubiquitin oscillators.
Posted
Mosaic copy number variation in human neurons.
Posted
Amine-modified random primers to label probes for DNA microarrays.
Posted
Spatial organization within a niche as a determinant of stem-cell fate.
Posted
Multiplatform single-sample estimates of transcriptional activation.
Posted
Differential L1 regulation in pluripotent stem cells of humans and apes.
Posted
Drug-induced cell cycle modulation leading to cell-cycle arrest, nuclear mis-segregation, or endoreplication.
Posted
Quantitative assessment of single-cell RNA-sequencing methods.
Posted
Inferring tumour purity and stromal and immune cell admixture from expression data.
Posted
PicoGreen quantitation of DNA: effective evaluation of samples pre- or post-PCR.
Posted
Production of single-stranded DNAs by self-cleavage of rolling-circle amplification products.
Posted
Identification of long-lived proteins reveals exceptional stability of essential cellular structures.
Posted
Image-based transcriptomics in thousands of single human cells at single-molecule resolution.
Posted
Mapping the fine structure of a eukaryotic promoter input-output function.
Posted
Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation.
Posted
Genomic organization of human transcription initiation complexes.
Posted
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure.
Posted
Barriers to transmission of transcriptional noise in a c-fos c-jun pathway.
Posted
An expansive human regulatory lexicon encoded in transcription factor footprints.
Posted
Smart-seq2 for sensitive full-length transcriptome profiling in single cells.
Posted
Accounting for technical noise en singlel-cell RNA-seq experiments.
Posted
Topoisomerases facilitate transcription of long genes linked to autism.
Posted
Processing and function of undermethylated chicken embryo fibroblast mRNA.
Posted
Effect of undermethylation on mRNA cytoplasmic appearance and half-life.
Posted
From cellular characteristics to disease diagnosis: uncovering phenotypes with supercells.
Posted
Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing.
Posted
Endonuclease V cleaves at inosines in RNA.
Posted
Human endonuclease V is a ribonuclease specific for inosine-containing RNA.
Posted
Novel proteomic approach (PUNCH-P) reveals cell cycle-specific fluctuations in mRNA translation.
Posted
Comparative analyses of multi-species sequences from targeted genomic regions.
Posted
CLP1 links tRNA metabolism to progressive motor-neuron loss.
Posted
Ultraconserved elements in the human genome.
Posted
Template-independent DNA synthesis activity associated with the reverse transcriptase of the long terminal repeat retrotransposon Tf1.
Posted
The guanylation of transfer RNA: An enzymatic reaction
Posted
Real-time dynamics of RNA polymerase II clustering in live human cells.
Posted
Myc-driven endogenous cell competition in the early mammalian embryo.
Posted
Box H/ACA snoRNAs are preferred substrates for the trimethylguanosine synthase in the divergent unicellular eukaryote Trichomonas vaginalis.
Posted
Lariat sequencing in a unicellular yeast identifies regulated alternative splicing of exons that are evolutionarily conserved with humans.
Posted
The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome.
Posted
CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors.
Posted
Transcriptional burst frequency and burst size are equally modulated across the human genome.
Posted
Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene.
Posted
Competitive interactions eliminate unfit embryonic stem cells at the onset of differentiation.
Posted
An epigenetic trap stabilizes singular olfactory receptor expression.
Posted
Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments.
Posted
Subnuclear partitioning of rRNA genes between the nucleolus and nucleoplasm reflects alternative epiallelic states.
Posted
A general method for preparing chromatin containing intact DNA.
Posted
Cell geometric constraints induce modular gene-expression patterns via redistribution of HDAC3 regulated by actomyosin contractility.
Posted
Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription.
Posted
Engineering of regulated stochastic cell fate determination.
Posted
Single-cell measurements of IgE-mediated FcεRI signaling using an integrated microfluidic platform.
Posted
Jpx RNA Activates Xist by Evicting CTCF.
Posted
Promoter directionality is controlled by U1 snRNP and polyadenylation signals.
Posted
Suspended microfluidics.
Posted
Encapsulating bacteria in agarose microparticles using microfluidics for high-throughput cell analysis and isolation.
Posted
Target inference from collections of genomic intervals.
Posted
Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis.
Posted
Dgital PCR to determine the number of transcripts from single neurons after patch-clamp recording.
Posted
linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis.
Posted
Isolation and solubilization of proteins after TRIzol extraction of RNA and DNA from patient material following prolonged storage.
Posted
Mass spectrometry-based metabolomics of single yeast cells.
Posted
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells.
Posted
Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise.
Posted
Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs.
Posted
Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development.
Posted
viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia.
Posted
Methods for qPCR gene expression profiling applied to 1440 lymphoblastoid single cells.
Posted
Widespread and extensive lengthening of 3' UTRs in the mammalian brain.
Posted
Single-molecule analysis of combinatorial epigenomic states in normal and tumor cells.
Posted
Generation of high-affinity DNA aptamers using an expanded genetic alphabet.
Posted
The DEAH-box helicase DHX36 mediates dendritic localization of the neuronal precursor-microRNA-134.
Posted
Extensive transcriptional heterogeneity revealed by isoform profiling.
Posted
Signaling Pathways Differentially Affect RNA Polymerase II Initiation, Pausing, and Elongation Rate in Cells.
Posted
Molecular Profiling of Synaptic Vesicle Docking Sites Reveals Novel Proteins but Few Differences between Glutamatergic and GABAergic Synapses.
Posted
Population context determines cell-to-cell variability in endocytosis and virus infection.
Posted
Barcoding cells using cell-surface programmable DNA-binding domains.
Posted
Robust cellular reprogramming occurs spontaneously during liver regeneration.
Posted
In vivo live imaging of RNA polymerase II transcription factories in primary cells.
Posted
Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine.
Posted
Mutations in prion-like domains in hnRNPA2B1 and hnRNPA1 cause multisystem proteinopathy and ALS.
Posted
A Sequence in the Drosophila H3-H4 Promoter Triggers Histone Locus Body Assembly and Biosynthesis of Replication-Coupled Histone mRNAs.
Posted
Associations with early-life socio-economic position in adult DNA methylation.
Posted
Histone Deacetylase 2 Cell Autonomously Suppresses Excitatory and Enhances Inhibitory Synaptic Function in CA1 Pyramidal Neurons.
Posted
Single-cell dynamics of genome-nuclear lamina interactions.
Posted
Protein instability following transport or storage on dry ice.
Posted
RNA polymerase II acts as an RNA-dependent RNA polymerase to extend and destabilize a non-coding RNA.
Posted
Nuclear translation visualized by ribosome-bound nascent chain puromycylation.
Posted
Translational profiling of hypocretin neurons identifies candidate molecules for sleep regulation.
Posted
MacroH2A histone variants act as a barrier upon reprogramming towards pluripotency.
Posted
Single-cell chemical lysis on microfluidic chips with arrays of microwells.
Posted
Precise maps of RNA polymerase reveal how promoters direct initiation and pausing.
Posted
Cleavage-based signal amplification of RNA.
Posted
Single-cell and subcellular pharmacokinetic imaging allows insight into drug action in vivo.
Posted
RNAi triggered by specialized machinery silences developmental genes and retrotransposons.
Posted
Single-molecule analysis of gene expression using two-color RNA labeling in live yeast.
Posted
In Vivo Epigenomic Profiling of Germ Cells Reveals Germ Cell Molecular Signatures.
Posted
Pyramidal neurons derived from human pluripotent stem cells integrate efficiently into mouse brain circuits in vivo.
Posted
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA.
Posted
Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data.
Posted
Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA.
Posted
Single-neuron RNA-Seq: technical feasibility and reproducibility.
Posted
Next generation sequencing for TCR repertoire profiling: platform-specific features and correction algorithms.
Posted
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression.
Posted
Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching.
Posted
Population transcriptomics with single-cell resolution: A new field made possible by microfluidics.
Posted
Negligible immunogenicity of terminally differentiated cells derived from induced pluripotent or embryonic stem cells.
Posted
Generation of rejuvenated antigen-specific T cells by reprogramming to pluripotency and redifferentiation.
Posted
Differential analysis of gene regulation at transcript resolution with RNA-seq.
Posted
Re-capping the message.
Posted
Two methods for full-length RNA sequencing for low quantities of cells and single cells.
Posted
cDNA normalization by hydroxyapatite chromatography to enrich transcriptome diversity in RNA-seq applications.
Posted
Trehalose-enhanced isolation of neuronal sub-types from adult mouse brain.
Posted
Transcriptome transfer produces a predictable cellular phenotype.
Posted
Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells.
Posted
Extensive somatic L1 retrotransposition in colorectal tumors.
Posted
Chromatin conformation governs T-cell receptor Jβ gene segment usage.
Posted
Genomewide characterization of non-polyadenylated RNAs.
Posted
Cell cycle gene-specific control of transcription has a critical role in proliferation of primordial germ cells.
Posted
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.
Posted
Stable intronic sequence RNA (sisRNA), a new class of noncoding RNA from the oocyte nucleus of Xenopus tropicalis.
Posted
RNA Polymerase II Collision Interrupts Convergent Transcription.
Posted
Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors.
Posted
In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination.
Posted
Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions.
Posted
Single-Cell Expression Analyses during Cellular Reprogramming Reveal an Early Stochastic and a Late Hierarchic Phase.
Posted
A noncoding RNA regulates the neurogenin1 gene locus during mouse neocortical development.
Posted
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat.
Posted
Mammalian NUMT insertion is non-random.
Posted
Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution.
Posted
Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment.
Posted
Transcription of Two Long Noncoding RNAs Mediates Mating-Type Control of Gametogenesis in Budding Yeast.
Posted
Shaping acoustic fields as a toolset for microfluidic manipulations in diagnostic technologies.
Posted
A paradoxical teratogenic mechanism for retinoic acid.
Posted
Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in leishmania.
Posted
Human intron-encoded Alu RNAs are processed and packaged into Wdr79-associated nucleoplasmic box H/ACA RNPs.
Posted
A New Approach to Simultaneously Quantify Both TCR α- and β-Chain Diversity after Adoptive Immunotherapy.
Posted
Mouse ooplasm confers context-specific reprogramming capacity.
Posted
Zipf-scaling behavior in the immune system.
Posted
RT-PCR without RNA isolation.
Posted
Quantification of mRNA in single cells and modelling of RT-qPCR induced noise.
Posted
Regulation of noise in the expression of a single gene.
Posted
Stochastic gene expression in a single cell.
Posted
Variability and memory of protein levels in human cells.
Posted
Single-molecule transcript counting of stem-cell markers in the mouse intestine.
Posted
Unbiased Analysis of TCRα/β Chains at the Single-Cell Level in Human CD8(+) T-Cell Subsets.
Posted
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.
Posted
A tissue-engineered jellyfish with biomimetic propulsion.
Posted
Dorsal activity of maternal squint is mediated by a non-coding function of the RNA.
Posted
Transcription initiation by human RNA polymerase II visualized at single-molecule resolution.
Posted
Fluorescence Fluctuation Spectroscopy Enables Quantitative Imaging of Single mRNAs in Living Cells.
Posted
Highly diverse TCRα chain repertoire of pre-immune CD8⁺ T cells reveals new insights in gene recombination.
Posted
Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells.
Posted
Comparison of reverse transcriptases in gene expression analysis.
Posted
Defining cell populations with single-cell gene expression profiling: correlations and identification of astrocyte subpopulations.
Posted
Direct multiplexed measurement of gene expression with color-coded probe pairs.
Posted
Microfluidic high-throughput encapsulation and hydrodynamic self-sorting of single cells.
Posted
Nuclear Envelope Budding Enables Large Ribonucleoprotein Particle Export during Synaptic Wnt Signaling.
Posted
Droplet microfluidic technology for single-cell high-throughput screening.
Posted
Massively parallel single-molecule and single-cell emulsion reverse transcription polymerase chain reaction using agarose droplet microfluidics.
Posted
Drop-based microfluidic devices for encapsulation of single cells.
Posted
Integrating whole transcriptome assays on a lab-on-a-chip for single cell gene profiling.
Posted
Alternatives for harvesting cells grown on microcarriers: effects on subsequent attachment and growth.
Posted
Observation of spatial propagation of amyloid assembly from single nuclei.
Posted
Live imaging of nascent RNA dynamics reveals distinct types of transcriptional pulse regulation.
Posted
Monitoring single-cell bioenergetics via the coarsening of emulsion droplets.
Posted
PCR amplification and genetic analysis in a microwell cell culturing chip.
Posted
Sequestration of highly expressed mRNAs in cytoplasmic granules, P-bodies, and stress granules enhances cell viability.
Posted
Single-molecule mechanical identification and sequencing.
Posted
Imaging individual mRNA molecules using multiple singly labeled probes.
Posted
Single-RNA counting reveals alternative modes of gene expression in yeast.
Posted
Stochastic mRNA synthesis in mammalian cells.
Posted
Biocompatible surfactants for water-in-fluorocarbon emulsions.
Posted
SlipChip.
Posted
Digital PCR on a SlipChip.
Posted
Robust growth of Escherichia coli.
Posted
Apparent non-canonical trans-splicing is generated by reverse transcriptase in vitro.
Posted
1-Million droplet array with wide-field fluorescence imaging for digital PCR.
Posted
“One cell-one well”: a new approach to inkjet printing single cell microarrays.
Posted
Drop-on-demand single cell isolation and total RNA analysis.
Posted
Practical, microfabrication-free device for single-cell isolation.
Posted
A microfluidic processor for gene expression profiling of single human embryonic stem cells.
Posted
Highly parallel genome-wide expression analysis of single Mammalian cells.
Posted
Method for improved Illumina sequencing library preparation using NuGEN Ovation RNA-Seq System.
Posted
Chemical transfection of cells in picoliter aqueous droplets in fluorocarbon oil.
Posted
Tracking lineages of single cells in lines using a microfluidic device.
Posted
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells.
Posted
Microfluidic isolation and transcriptome analysis of serum microvesicles
Posted
An end-healing enzyme from Clostridium thermocellum with 5' kinase, 2',3' phosphatase, and adenylyltransferase activities.
Posted
Reconstituting bacterial RNA repair and modification in vitro.
Posted
Bacterial Hen1 is a 3' terminal RNA ribose 2'-O-methyltransferase component of a bacterial RNA repair cassette.
Posted
5'-RNA self-capping from guanosine diphosphate.
Posted
Cell-Type-Based Analysis of MicroRNA Profiles in the Mouse Brain
Posted
Title: A race model for singular olfactory receptor expression.
Posted
High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment.
Posted
Age, microbiota, and T cells shape diverse individual IgA repertoires in the intestine.
Posted
RTP family members induce functional expression of mammalian odorant receptors.
Posted
Differentially expressed transcripts from phenotypically identified olfactory sensory neurons.
Posted
Rigorous and thorough bioinformatic analyses of olfactory receptor promoters confirm enrichment of O/E and homeodomain binding sites but reveal no new common motifs.
Posted
Promoter architecture of mouse olfactory receptor genes.
Posted
Counting absolute numbers of molecules using unique molecular identifiers.
Posted
Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes.
Posted
A Role for Differential Variable Gene Pairing in Creating T Cell Receptors Specific for Unique Major Histocompatibility Ligands.
Posted
Synthesis, base pairing properties and trans-lesion synthesis by reverse transcriptases of oligoribonucleotides containing the oxidatively damaged base 5-hydroxycytidine.
Posted
Deep-transcriptome and ribonome sequencing redefines the molecular networks of pluripotency and the extracellular space in human embryonic stem cells.
Posted
Regulation of the probability of mouse odorant receptor gene choice.
Posted
Improved quantitative real-time RT-PCR for expression profiling of individual cells.
Posted
PCR inhibition by reverse transcriptase leads to an overestimation of amplification efficiency.
Posted
Sex determination: primitive Y chromosomes in fish.
Posted
Elucidation of the small RNA component of the transcriptome.
Posted
Transposon-free regions in mammalian genomes.
Posted
Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals.
Posted
The proteomes of transcription factories containing RNA polymerases I, II or III.
Posted
High TCR diversity ensures optimal function and homeostasis of Foxp3(+) regulatory Tcells.
Posted
Exogenous Stimuli Maintain Intraepithelial Lymphocytes via Aryl Hydrocarbon Receptor Activation.
Posted
Multifunctional Picoliter Droplet Manipulation Platform and its Application in Single Cell Analysis.
Posted
Independent localization of MAP2, CaMKIIα and β-actin RNAs in low copy numbers.
Posted
Antibodies from patients with Parkinson's disease react with protein modified by dopamine oxidation.
Posted
Mechanisms of dendritic mRNA transport and its role in synaptic tagging.
Posted
PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters.
Posted
Quantitative impact of thymic selection on Foxp3+ and Foxp3− subsets of self-peptide/MHC class II-specific CD4+ T cells.
Posted
Trehalose Renders the Dauer Larva of Caenorhabditis elegans Resistant to Extreme Desiccation.
Posted
RNA mimics of green fluorescent protein.
Posted
High-throughput mapping of the promoters of the mouse olfactory receptor genes reveals a new type of mammalian promoter and provides insight into olfactory receptor gene regulation.
Posted
Generation of a nicking enzyme that stimulates site-specific gene conversion from the I-AniI LAGLIDADG homing endonuclease.
Posted
High-throughput microfluidic single-cell RT-qPCR.
Posted
Gene expression analysis of plant host-pathogen interactions by SuperSAGE.
Posted
Type III restriction enzymes cleave DNA by long-range interaction between sites in both head-to-head and tail-to-tail inverted repeat
Posted
Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis.
Posted
Recognition of the peripheral self by naturally arising CD25+ CD4+ T cell receptors.
Posted
Comparison of T-cell receptor Jβ gene usage in spleen cells of different mouse strains.
Posted
Food restriction enhances visual cortex plasticity in adulthood.
Posted
Selection of T cell receptors with a recurrent CDR3β peptide-contact motif within the repertoire of alloreactive CD8 T cells.
Posted
Structural analysis of 5'-mRNA-cap interactions with the human AGO2 MID domain.
Posted
Acoustic microstreaming increases the efficiency of reverse transcription reactions comprising single-cell quantities of RNA.
Posted
A direct estimate of the human alphabeta T cell receptor diversity.
Posted
A Mechanism for TCR Sharing between T Cell Subsets and Individuals Revealed by Pyrosequencing.
Posted
Retrospective birth dating of cells in humans.
Posted
DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration.
Posted
Cytoplasmic Intron Sequence-Retaining Transcripts Can Be Dendritically Targeted via ID Element Retrotransposons.
Posted
Phosphorylation Regulates OLIG2 Cofactor Choice and the Motor Neuron-Oligodendrocyte Fate Switch.
Posted
Genome-wide analysis of promoter architecture in Drosophila melanogaster.
Posted
Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes.
Posted
Amplification of RNA transcripts using terminal continuation.
Posted
Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerases.
Posted
Single-cell transcript analysis of pancreas development.
Posted
Single cell transcriptional profiling reveals heterogeneity of human induced pluripotent stem cells.
Posted
Genetic and biochemical analysis of the functional domains of yeast tRNA ligase.
Posted
HSPC117 is the essential subunit of a human tRNA splicing ligase complex.
Posted
A unique chromatin signature uncovers early developmental enhancers in humans.
Posted
Reverse transcriptase template switching and false alternative transcripts.
Posted
Paired analysis of TCRα and TCRβ chains at the single-cell level in mice.
Posted
PCR amplification from single DNA molecules on magnetic beads in emulsion: application for high-throughput screening of transcription factor targets.
Posted
Single-molecule reverse transcription polymerase chain reaction using water-in-oil emulsion.
Posted
Efficient and specific knockdown of small non-coding RNAs in mammalian cells and in mice.
Posted
Reverse transcriptases can clamp together nucleic acids strands with two complementary bases at their 3'-termini for initiating DNA synthesis.
Posted
Minor change, major difference: divergent functions of highly conserved cis-regulatory elements subsequent to whole genome duplication events.
Posted
An improved one-tube RT-PCR protocol for analyzing single-cell gene expression in individual mammalian cells.
Posted
A novel emulsion mixture for in vitro compartmentalization of transcription and translation in the rabbit reticulocyte system.
Posted
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.
Posted
A genomic code for nucleosome positioning.
Posted
Intergenic transcription causes repression by directing nucleosome assembly.
Posted
A novel phosphodiesterase from cultured tobacco cells.
Posted
A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries.
Posted
DNA purification and isolation using a solid-phase.
Posted
The ends of a large RNA molecule are necessarily close.
Posted
The majority of total nuclear-encoded non-ribosomal RNA in a human cell is ‘dark matter’ un-annotated RNA
Posted
Amplification of cDNA ends based on template-switching effect and step-out PCR.
Posted
Quantitative analysis of NF1 and OMGP gene transcripts in sporadic gliomas, sporadic meningiomas and neurofibromatosis type 1-associated plexiform neurofibromas.
Posted
Nuclear snRNA and nuclear function (discovery of 5' cap structures in RNA).
Posted
CapSelect: a highly sensitive method for 5' CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs.
Posted
Aberrant mRNAs with extended 3’ UTRs are substrates for rapid degradation by mRNA surveillance.
Posted
The balance sheet for transcription: an analysis of nuclear RNA metabolism in mammalian cells.
Posted
High-fidelity mRNA amplification for gene profiling.
Posted
Thermodynamics-structure relationship of single mismatches in RNA/DNA duplexes.
Posted
The olfactory receptor gene superfamily: data mining, classification, and nomenclature.
Posted
A simple and reliable 5'-RACE approach.
Posted
Mouse-human orthology relationships in an olfactory receptor gene cluster.
Posted
Genomic analysis of orthologous mouse and human olfactory receptor loci.
Posted
Increased yield of PCR products by addition of T4 gene 32 protein to the SMART PCR cDNA synthesis system.
Posted
Molecular recognition of DNA by small molecules.
Posted
Detection of the 5'-cap structure of messenger RNAs with the use of the cap-jumping approach.
Posted
Genomic analysis of the olfactory receptor region of the mouse and human T-cell receptor alpha/delta loci.
Posted
The olfactory receptor gene superfamily of the mouse.
Posted
A highly efficient method for long-chain cDNA synthesis using trehalose and betaine.
Posted
Extra-long first-strand cDNA synthesis.
Posted
A Drosophila fragile X protein interacts with components of RNAi and ribosomal proteins.
Posted
Super-enzyme patents get their day in court.
Posted
RNA Amplification in Brain Tissues.
Posted
Complex transcription and splicing of odorant receptor genes.
Posted
Mapping of transcription start sites by direct sequencing of SMART RACE products.
Posted
Digital genotyping and haplotyping with polymerase colonies.
Posted
Fluorescent in situ sequencing on polymerase colonies.
Posted
The bases of the nucleic acids of some bacterial and animal viruses: the occurrence of 5-hydroxymethylcytosine.
Posted
Human beta-globin mRNAs that harbor a nonsense codon are degraded in murine erythroid tissues to intermediates lacking regions of exon I or exons I and II that have a cap-like structure at the 5' termini.
Posted
Use of alkyltrimethylammonium bromides for the isolation of ribo- and desoxyribo-nucleic acids.
Posted
Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels.
Posted
High-accuracy amplification of nanogram total RNA amounts for gene profiling.
Posted
Effects of sodium ions on DNA duplex oligomers: improved predictions of melting temperatures.
Posted
Genetic structure of the purebred domestic dog.
Posted
SMART amplification combined with cDNA size fractionation in order to obtain large full-length clones.
Posted
Separable enhancer sequences regulate the expression of the neural bHLH transcription factor neurogenin 1.
Posted
Regional patterns of gene expression in human and chimpanzee brains.
Posted
Gene loops juxtapose promoters and terminators in yeast.
Posted
Molecular basis for catecholaminergic neuron diversity.
Posted
High-throughput microarray detection of olfactory receptor gene expression in the mouse.
Posted
Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos.
Posted
2′,3′-cyclic phosphates and nontemplated nucleotides at the 3′ end of spliceosomal U6 small nuclear RNAs.
Posted
Determination of the capped site sequence of mRNA based on the detection of cap-dependent nucleotide addition using an anchor ligation method.
Posted
The human L1 promoter: variable transcription initiation sites and a major impact of upstream flanking sequence on promoter activity.
Posted
Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa.
Posted
Reevaluation and reduction of a PCR bias caused by reannealing of templates.
Posted
Structure-function analysis of the yeast NAD+-dependent tRNA 2'-phosphotransferase Tpt1.
Posted
The biotin-streptavidin interaction can be reversibly broken using water at elevated temperatures.
Posted
Identification of a deoxyribonuclease I inhibitor from a phage-peptide library.
Posted
Cell type-specific gene expression of midbrain dopaminergic neurons reveals molecules involved in their vulnerability and protection.
Posted
Exogenous AdoMet and its analogue sinefungin differentially influence DNA cleavage by R.EcoP15I--usefulness in SAGE.
Posted
Genome sequencing in microfabricated high-density picolitre reactors.
Posted
Accurate multiplex polony sequencing of an evolved bacterial genome.
Posted
The solution to the streptavidin-biotin paradox: the influence of history on the strength of single molecular bonds.
Posted
Coating of poly(dimethylsiloxane) with n-dodecyl-beta-D-maltoside to minimize nonspecific protein adsorption.
Posted
Expressible molecular colonies.
Posted
Vertebrate neurogenin evolution: long-term maintenance of redundant duplicates.
Posted
Nearest-neighbor thermodynamics of deoxyinosine pairs in DNA duplexes.
Posted
Sexually dimorphic expression of the X-linked gene Eif2s3x mRNA but not protein in mouse brain.
Posted
The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C.
Posted
The RIN: an RNA integrity number for assigning integrity values to RNA measurements.
Posted
Long-range polony haplotyping of individual human chromosome molecules.
Posted
Sequencing the termini of capped viral RNA by 5′-3′ ligation and PCR.
Posted
Stabilization of Enzymes against Thermal Stress and Freeze-Drying by Mannosylglycerate.
Posted
An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis.
Posted
Effects of visual experience on activity-dependent gene regulation in cortex.
Posted
Differentially expressed transcripts from phenotypically identified olfactory sensory neurons.
Posted
Gene expression changes and molecular pathways mediating activity-dependent plasticity in visual cortex.
Posted
Microfluidic single-cell mRNA isolation and analysis.
Posted
Transcriptional regulation of neurogenesis in the olfactory epithelium.
Posted
Reverse transcription using random pentadecamer primers increases yield and quality of resulting cDNA.
Posted
tRNAHis guanylyltransferase catalyzes a 3′-5′ polymerization reaction that is distinct from G₋₁ addition.
Posted
Amplification of complex gene libraries by emulsion PCR.
Posted
BEAMing: single-molecule PCR on microparticles in water-in-oil emulsion.
Posted
Directed evolution by in vitro compartmentalization.
Posted
Organization and mobility of water in amorphous and crystalline trehalose.
Posted
Interchromosomal interactions and olfactory receptor choice.
Posted
Amplified RNA synthesized from limited quantities of heterogeneous cDNA.
Posted
Identification of potential regulatory motifs in odorant receptor genes by analysis of promoter sequences.
Posted
Dynamic assembly of primers on nucleic acid templates.
Posted
Gene expression profiling of single cells on large-scale oligonucleotide arrays.
Posted
Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines.
Posted
PCR-suppression effect: kinetic analysis and application to representative or long-molecule biased PCR-based amplification of complex samples.
Posted
Counting low-copy number proteins in a single cell.
Posted
Biochemical and genetic analysis of RNA cap guanine-N2 methyltransferases from Giardia lamblia and Schizosaccharomyces pombe.
Posted
Differential impact of Lhx2 deficiency on expression of class I and class II odorant receptor genes in mouse.
Posted
5′-tailed sequencing primers improve sequencing quality of PCR products.
Posted
A single IGF1 allele is a major determinant of small size in dogs.
Posted
Differential gene expression between sensory neocortical areas: potential roles for Ten_m3 and Bcl6 in patterning visual and somatosensory pathways.
Posted
Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray.
Posted
A mutation in the myostatin gene increases muscle mass and enhances racing performance in heterozygote dogs.
Posted
Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy.
Posted
Promotor elements governing the clustered expression pattern of odorant receptor genes.
Posted
Screening of genes associated with termination of the critical period of visual cortex plasticity in rats.
Posted
Artifactual detection of biotin on histones by streptavidin.
Posted
Genomic analysis of human microRNA transcripts.
Posted
Neurogenin and NeuroD direct transcriptional targets and their regulatory enhancers.
Posted
Prominent roles for odorant receptor coding sequences in allelic exclusion.
Posted
Deletion of the core-H region in mice abolishes the expression of three proximal odorant receptor genes in cis.
Posted
The olfactory vector hypothesis of neurodegenerative disease: is it viable?
Posted
Single-molecule DNA sequencing of a viral genome.
Posted
High-throughput single copy DNA amplification and cell analysis in engineered nanoliter droplets.
Posted
The new paradigm of flow cell sequencing.
Posted
Long-range, high-throughput haplotype determination via haplotype-fusion PCR and ligation haplotyping.
Posted
Chum-RNA allows preparation of a high-quality cDNA library from a single-cell quantity of mRNA without PCR amplification.
Posted
Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing.
Posted
Sponge genes provide new insight into the evolutionary origin of the neurogenic circuit.
Posted
PU.1 expression is modulated by the balance of functional sense and antisense RNAs regulated by a shared cis-regulatory element.
Posted
Genetic control of experience-dependent plasticity in the visual cortex.
Posted
Visual experience regulates Kv3.1b and Kv3.2 expression in developing rat visual cortex.
Posted
Global alignment of multiple protein interaction networks with application to functional orthology detection.
Posted
Unique substrate spectrum and PCR application of Nanoarchaeum equitans family B DNA polymerase.
Posted
Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs.
Posted
A procedure for highly specific, sensitive, and unbiased whole-genome amplification.
Posted
Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood.
Posted
DcpS as a therapeutic target for spinal muscular atrophy.
Posted
Structural explanation for the role of Mn2+ in the activity of phi6 RNA-dependent RNA polymerase.
Posted
Delayed plasticity of inhibitory neurons in developing visual cortex.
Posted
Mutations of LRTOMT, a fusion gene with alternative reading frames, cause nonsyndromic deafness in humans.
Posted
Ultraconserved elements: analyses of dosage sensitivity, motifs and boundaries.
Posted
Alternative isoform regulation in human tissue transcriptomes.
Posted
Accurate whole human genome sequencing using reversible terminator chemistry.
Posted
A novel conserved evx1 enhancer links spinal interneuron morphology and cis-regulation from fish to mammals.
Posted
Odorant receptor (OR) gene choice is biased and non-clonal in two olfactory placode cell lines, and OR RNA is nuclear prior to differentiation of these lines.
Posted
A novel, enigmatic histone modification: biotinylation of histones by holocarboxylase synthetase.
Posted
Regulation of neural macroRNAs by the transcriptional repressor REST.
Posted
Large number of ultraconserved elements were already present in the jawed vertebrate ancestor.
Posted
Novel mutations in Moloney Murine Leukemia Virus reverse transcriptase increase thermostability through tighter binding to template-primer.
Posted
Chromatin structure analyses identify miRNA promoters.
Posted
Characterization of Moloney Murine Leukaemia Virus/Avian Myeloblastosis Virus Chimeric Reverse Transcriptases.
Posted
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
Posted
Functional analysis of the evolutionarily conserved cis-regulatory elements on the sox17 gene in zebrafish.
Posted
Chromosomal dynamics at the Shh locus: limb bud-specific differential regulation of competence and active transcription.
Posted
One for all? A viral protein supplants the mRNA cap-binding complex.
Posted
Profiling model T-cell metagenomes with short reads.
Posted
Reprogramming of fibroblasts into induced pluripotent stem cells with orphan nuclear receptor Esrrb.
Posted
Precision and diversity in an odor map on the olfactory bulb.
Posted
Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus.
Posted
Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs.
Posted
Design of 240,000 orthogonal 25mer DNA barcode probes.
Posted
Biological basis for restriction of microRNA targets to the 3' untranslated region in mammalian mRNAs.
Posted
Mapping of class I and class II odorant receptors to glomerular domains by two distinct types of olfactory sensory neurons in the mouse.
Posted
Reduced responsiveness to long-term monocular deprivation of parvalbumin neurons assessed by c-Fos staining in rat visual cortex.
Posted
Molecular and evolutionary history of melanism in North American gray wolves.
Posted
A synthetic snRNA m3G-CAP enhances nuclear delivery of exogenous proteins and nucleic acids.
Posted
Genome-Wide Analysis In Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling.
Posted
Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing.
Posted
Identification of a cytoplasmic complex that adds a cap onto 5'-monophosphate RNA.
Posted
Highly conserved non-coding elements on either side of SOX9 associated with Pierre Robin sequence.
Posted
Massive transcriptional start site analysis of human genes in hypoxia cells.
Posted
Functional Characterization and Modulation of the DNA Cleavage Efficiency of Type III Restriction Endonuclease EcoP15I in Its Interaction with Two Sites in the DNA Target.
Posted
A library-based method to rapidly analyse chromatin accessibility at multiple genomic regions.
Posted
Long 3’-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae.
Posted
Conserved recoding RNA editing of vertebrate C1q-related factor C1QL1.
Posted
Novel method for high-throughput colony PCR screening in nanoliter-reactors.
Posted
High-throughput verification of transcriptional starting sites by Deep-RACE.
Posted
RNA transcripts, miRNA-sized fragments and proteins produced from D4Z4 units: new candidates for the pathophysiology of facioscapulohumeral dystrophy.
Posted
Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis.
Posted
Axonal mRNA in uninjured and regenerating cortical mammalian axons.
Posted
Progressive lengthening of 3’ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development.
Posted
Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by the MLL Fusion Partner TET1.
Posted
The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain.
Posted
Redefining microRNA targets.
Posted
Kinetics and thermodynamics of DNA hybridization on gold nanoparticles.
Posted
Formyl peptide receptor-like proteins are a novel family of vomeronasal chemosensors.
Posted
Automated microfluidic chromatin immunoprecipitation from 2,000 cells.
Posted
High-throughput sequencing of the zebrafish antibody repertoire.
Posted
Direct detection of abortive RNA transcripts in vivo.
Posted
qiRNA is a new type of small interfering RNA induced by DNA damage.
Posted
dUTP incorporation into genomic DNA is linked to transcription in yeast.
Posted
Essential role for a long-term depression mechanism in ocular dominance plasticity.
Posted
Small RNAs derived from snoRNAs.
Posted
Chemically inducible inactivation of protein synthesis in genetically targeted neurons.
Posted
Transcriptional and electrophysiological maturation of neocortical fast-spiking GABAergic interneurons.
Posted
L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism.
Posted
Formyl peptide receptors are candidate chemosensory receptors in the vomeronasal organ.
Posted
Stalled Hox promoters as chromosomal boundaries.
Posted
Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq.
Posted
Definition, conservation and epigenetics of housekeeping and tissue-enriched genes.
Posted
Efficient oligonucleotide-mediated degradation of nuclear noncoding RNAs in mammalian cultured cells.
Posted
Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing.
Posted
A gene network regulating lysosomal biogenesis and function.
Posted
Allelic Polymorphism within the TAS1R3 Promoter Is Associated with Human Taste Sensitivity to Sucrose.
Posted
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
Posted
The MmeI family: type II restriction-modification enzymes that employ single-strand modification for host protection.
Posted
Dependence of mouse embryonic stem cells on threonine catabolism.
Posted
Transcriptome analysis by strand-specific sequencing of complementary DNA.
Posted
Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry.
Posted
Quantitative phenotyping via deep barcode sequencing.
Posted
RNA Polymerase III Detects Cytosolic DNA and Induces Type I Interferons through the RIG-I Pathway.
Posted
Inclusion formation and neuronal cell death through neuron-to-neuron transmission of α-synuclein.
Posted
Conservation of enhancer location in divergent insects.
Posted
Digital transcriptome profiling using selective hexamer priming for cDNA synthesis.
Posted
Cell contact-dependent acquisition of cellular and viral nonautonomously encoded small RNAs.
Posted
Identification of brain transcriptional variation reproduced in peripheral blood: an approach for mapping brain expression traits.
Posted
Zip Nucleic Acids: new high affinity oligonucleotides as potent primers for PCR and reverse transcription.
Posted
Regionalized loss of parvalbumin interneurons in the cerebral cortex of mice with deficits in GFRalpha1 signaling.
Posted
Identification of gemin5 as a novel 7-methylguanosine cap-binding protein.
Posted
Conserved repertoire of orthologous vomeronasal type 1 receptor genes in ruminant species.
Posted
Importance of 5′-terminal blocking structure to stabilize mRNA in eukaryotic protein synthesis.
Posted
Flexibility of transcription factor target site position in conserved cis-regulatory modules.
Posted
Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms.
Posted
Biotin is not a natural histone modification.
Posted
Cis-regulation and chromosomal rearrangement of the fgf8 locus after the teleost/tetrapod split.
Posted
Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast.
Posted
High DNA melting temperature predicts transcription start site location in human and mouse.
Posted
RNA polymerase II-TFIIB structure and mechanism of transcription initiation.
Posted
Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing.
Posted
A guide for in-house design of template-switch-based 5′ rapid amplification of cDNA ends systems.
Posted
Enhanced amplification of GC-rich DNA with two organic reagents.
Posted
Genetic analysis of the NEUROG2 gene in patients with Parkinson's disease.
Posted
Microdroplet-based PCR enrichment for large-scale targeted sequencing.
Posted
Functionally conserved cis-regulatory elements of COL18A1 identified through zebrafish transgenesis.
Posted
High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis.
Posted
Enhanced mRNA cap methylation increases Cyclin D1 expression and promotes cell transformation.
Posted
MOR23 Promotes Muscle Regeneration and Regulates Cell Adhesion and Migration.
Posted
A Simple Cipher Governs DNA Recognition by TAL Effectors.
Posted
Breaking the Code of DNA-Binding Specificity of TAL-Type III Effectors.
Posted
Cancer-associated IDH1 mutations produce 2-hydroxyglutarate.
Posted
Classical MHCI molecules regulate retinogeniculate refinement and limit ocular dominance plasticity.
Posted
Extreme variability among mammalian V1R gene families.
Posted
Nuclear Receptor-Induced Chromosomal Proximity and DNA Breaks Underlie Specific Translocations in Cancer.
Posted
Somatic sex reprogramming of adult ovaries to testes by FOXL2 ablation.
Posted
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants.
Posted
Long nuclear-retained non-coding RNAs and allele-specific higher-order chromatin organization at imprinted snoRNA gene arrays.
Posted
Rate, molecular spectrum, and consequences of human mutation.
Posted
High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets.
Posted
Alternative splicing produces high levels of noncoding isoforms of bHLH transcription factors during development.
Posted
Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli.
Posted
FRT-seq: amplification-free, strand-specific transcriptome sequencing.
Posted
Digital nature of the immediate-early transcriptional response.
Posted
Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor.
Posted
Digital transcriptome profiling from attomole-level RNA samples.
Posted
Synthetic design of strong promoters.
Posted
Close association of RNA polymerase II and many transcription factors with Pol III genes.
Posted
Histidine-mediated RNA transfer to GDP for unique mRNA capping by vesicular stomatitis virus RNA polymerase.
Posted
The primary transcriptome of the major human pathogen Helicobacter pylori.
Posted
MBD2 and MeCP2 Regulate Distinct Transitions in the Stage-Specific Differentiation of Olfactory Receptor Neurons.
Posted
High-performance single cell genetic analysis using microfluidic emulsion generator arrays.
Posted
Critical Period for Inhibitory Plasticity in RodentBinocular V1.
Posted
Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products.
Posted
The lta4h Locus Modulates Susceptibility to Mycobacterial Infection in Zebrafish and Humans.
Posted
Loss of Arc renders the visual cortex impervious to the effects of sensory experience or deprivation.
Posted
End labeling of enzymatically decapped mRNA.
Posted
Optimized design and data analysis of tag-based cytosine methylation assays.
Posted
Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers.
Posted
Addition of poly(A) and poly(A)-rich tails during RNA degradation in the cytoplasm of human cells.
Posted
Neuronal pentraxins mediate silent synapse conversion in the developing visual system.
Posted
Widespread transcription at neuronal activity-regulated enhancers.
Posted
Characterization of transcription start sites of putative non-coding RNAs by multifaceted use of massively paralleled sequencer.
Posted
A large fraction of extragenic RNA pol II transcription sites overlap enhancers.
Posted
A paired-end sequencing strategy to map the complex landscape of transcription initiation.
Posted
Tiny abortive initiation transcripts exert antitermination activity on an RNA hairpin-dependent intrinsic terminator.
Posted
The Landscape of C. elegans 3'UTRs.
Posted
Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.
Posted
A flexible and efficient template format for circular consensus sequencing and SNP detection.
Posted
Transcriptional regulation by small RNAs at sequences downstream from 3' gene termini.
Posted
Conserved role of intragenic DNA methylation in regulating alternative promoters.
Posted
Global analysis of trans-splicing in Drosophila.
Posted
High-resolution analysis of parent-of-origin allelic expression in the mouse brain.
Posted
Long noncoding RNA as modular scaffold of histone modification complexes.
Posted
TATA is a modular component of synthetic promoters.
Posted
Sirtuin 1 regulation of developmental genes during differentiation of stem cells.
Posted
Chromosomal location-dependent nonstochastic onset of odor receptor expression.
Posted
New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism.
Posted
Trimethylguanosine capping selectively promotes expression of Rev-dependent HIV-1 RNAs.
Posted
Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis.
Posted
Sequence-specific cleavage of RNA by Type II restriction enzymes.
Posted
An SNP in an ultraconserved regulatory element affects Dlx5/Dlx6 regulation in the forebrain.
Posted
Mammalian microRNAs predominantly act to decrease target mRNA levels.
Posted
Experience-dependent reactivation of ocular dominance plasticity in the adult visual cortex.
Posted
Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.
Posted
A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression.
Posted
ChIP-Seq identification of weakly conserved heart enhancer.
Posted
Distinct 3'UTRs differentially regulate activity-dependent translation of brain-derived neurotrophic factor (BDNF).
Posted
The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery.
Posted
Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells.
Posted
Genome-wide measurement of RNA secondary structure in yeast.
Posted
Selective cell death mediated by small conditional RNAs.
Posted
Branchiostoma floridae has separate healing and sealing enzymes for 5'-phosphate RNA ligation.
Posted
Foxa2 regulates the expression of Nato3 in the floor plate by a novel evolutionarily-conserved promoter.
Posted
An arthropod cis-regulatory element functioning in sensory organ precursor development dates back to the Cambrian.
Posted
Structure of an Ebf1:DNA complex reveals unusual DNA recognition and structural homology with Rel proteins.
Posted
Cell-permeable Foxp3 protein alleviates autoimmune disease associated with inflammatory bowel disease and allergic airway inflammation.
Posted
Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing.
Posted
Fitness correlates of heritable variation in antibody responsiveness in a wild mammal.
Posted
A cluster of non-redundant Ngn1 binding sites is required for regulation of deltaA expression in zebrafish.
Posted
Epigenetic control of retrotransposon expression in human embryonic stem cells.
Posted
Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome.
Posted
Correlated Levels of mRNA and Soma Size in Single Identified Neurons: Evidence for Compartment-specific Regulation of Gene Expression.
Posted
Role of Pax3 acetylation in the regulation of Hes1 and Neurog2.
Posted
Size fractionation of double-stranded DNA by precipitation with polyethylene glycol.
Posted
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.
Posted
U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus.
Posted
Gamma-monomethyl phosphate: a cap structure in spliceosomal U6 small nuclear RNA.
Posted
Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms.
Posted
Central dogma of molecular biology.
Posted
Polypeptides encoded by polyadenylated and non-polyadenylated messenger RNAs from normal and heat shocked HeLa cells.
Posted
Strand displacement synthesis capability of Moloney murine leukemia virus reverse transcriptase.
Posted
Cloning of RNA molecules in vitro.
Posted
U21, a novel small nucleolar RNA with a 13 nt. complementarity to 28S rRNA, is encoded in an intron of ribosomal protein L5 gene in chicken and mammals.
Posted
Molecular cloning of the olfactory neuronal transcription factor Olf-1 by genetic selection in yeast.
Posted
Small nucleolar RNAs encoded by introns of the human cell cycle regulatory gene RCC1.
Posted
Determination of messenger RNA 5'-ends by reverse transcription of the cap structure.
Posted
High-efficiency full-length cDNA cloning by biotinylated CAP trapper.
Posted
A novel family of putative pheromone receptors in mammals with a topographically organized and sexually dimorphic distribution.
Posted
A multigene family encoding a diverse array of putative pheromone receptors in mammals.
Posted
Thermostabilization and thermoactivation of thermolabile enzyme by trehalose and its application for the synthesis of full length cDNA.
Posted
Characterization of RNA strand displacement synthesis by Moloney murine leukemia virus reverse transcriptase.
Posted
Increased specificity of reverse transcription priming by trehalose and oligo-blockers allows high-efficiency window separation of mRNA display.
Posted
Methods and compositions for full-length cDNA Cloning using a template-switching oligonucleotide.
Posted
Method for the 5’-cap-dependent amplification of cDNAs.
Posted
To Do
Posted
Method for suppressing DNA fragment amplification during PCR.
Posted
Method for improving heat stability of RNA.
Posted
ScriptCap™ m7G Capping System.
Posted
Process for selective amplification of a full-length cDNA involving an anchor nucleic acid.
Posted