Nadège Guiglielmoni, Antoine Houtain, Alessandro Derzelle, Karine van Doninck, Jean-François Flot

BMC Bioinformatics. 2021 Jun 5;22(1):303. doi:10.1186/s12859-021-04118-3

Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms

Benchark using a bdelloid rotifer. Performance of most software plateaus over 50× depth. purge_dups performed well on Flye assemblies. Filtering our shorter reads did not dramatically change the N50 of Flye 2.5 assemblies