Dernières modifications :

Alaska
diff --git a/biblio/10.1093_plankt_fbu092.mdwn b/biblio/10.1093_plankt_fbu092.mdwn
new file mode 100644
index 00000000..d70b96f0
--- /dev/null
+++ b/biblio/10.1093_plankt_fbu092.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Interannual patterns during spring and late summer of larvaceans and pteropods in the coastal Gulf of Alaska, and their relationship to pink salmon survival"]]
+[[!tag Oikopleura]]
+
+Ayla J. Doubleday, Russell R. Hopcroft
+
+Journal of Plankton Research, Volume 37, Issue 1, January/February 2015, Pages 134–150
+
+Interannual patterns during spring and late summer of larvaceans and pteropods in the coastal Gulf of Alaska, and their relationship to pink salmon survival
+
+[[!doi 10.1093/plankt/fbu092 desc="“Across seasons, O. labradoriensis and F. borealis abundance were negatively related to temperature.”  “O. dioica occurred in highest abundance during late summer relative to spring. During this time, O. dioica abundance was positively related to temperature and chlorophyll-a, but negatively related to salinity, and had a maximum abundance at nearshore stations.”  “When season and year were pooled, the 150-µm net collected 34% of the abundance that the 53-µm net collected for Oikopleura spp., 34% of the abundance for Fritillaria spp. and 30% of the abundance for L. helicina. If we assume, time-of-day has no impact on the distribution of either group (i.e. no diel vertical migrations), then the 505-µm net captures 10% of the 53-µm net.”  “The 505-µm mesh nets indicate that Oikopleura spp. had highest abundance at the surface”"]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 365af405..09dc703f 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -458,5 +458,7 @@ Ecology
    2012|biblio/10.1007_s13131-012-0243-7]]).
  - _O. dioica_ was reported in the bay of Bengal by [[Bhavanarayana and
    Ganapati in 1972|biblio/10.1007_BF03045329]].
+ - _O. dioica_ was reported in Alaska, where it is more abundant in summer
+   and near the coast ([[Doubleday and Hopcroft, 2015|biblio/10.1093_plankt_fbu092]]).
 
 [[!inline pages="tagged(Oikopleura)" actions="no" limit=0]]

Café
diff --git a/biblio/28280153.mdwn b/biblio/28280153.mdwn
new file mode 100644
index 00000000..ab50fef4
--- /dev/null
+++ b/biblio/28280153.mdwn
@@ -0,0 +1,8 @@
+[[!meta title="Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome."]]
+[[!tag yeast synthethic chromosome]]
+
+Science. 2017 Mar 10;355(6329). pii: eaaf4791. doi:10.1126/science.aaf4791
+
+Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome.
+
+[[!pmid 28280153 desc="Repaired structural variants by engeneering duplications and forcing their resolution by I-SceI cleavage."]]

creating tag page tags/variations
diff --git a/tags/variations.mdwn b/tags/variations.mdwn
new file mode 100644
index 00000000..47fe6435
--- /dev/null
+++ b/tags/variations.mdwn
@@ -0,0 +1,4 @@
+[[!meta title="pages tagged variations"]]
+
+[[!inline pages="tagged(variations)" actions="no" archive="yes"
+feedshow=10]]

Café
diff --git a/biblio/16136133.mdwn b/biblio/16136133.mdwn
new file mode 100644
index 00000000..aa16959c
--- /dev/null
+++ b/biblio/16136133.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication."]]
+[[!tag chromosome variations]]
+
+Linardopoulou EV, Williams EM, Fan Y, Friedman C, Young JM, Trask BJ.
+
+Nature. 2005 Sep 1;437(7055):94-100 doi:10.1038/nature04029
+
+Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication.
+
+[[!pmid 16136133 desc="New segments are exchanged between chromosomes via the NHEJ pathway.  Segments exchange internal sequences via homologous recombinations.  The rate of gene creation is higher in subtelomers (and centromeres...) than in chromosomal cores."]]

Café
diff --git a/biblio/28416820.mdwn b/biblio/28416820.mdwn
new file mode 100644
index 00000000..2d874f04
--- /dev/null
+++ b/biblio/28416820.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Contrasting evolutionary genome dynamics between domesticated and wild yeasts."]]
+[[!tag yeast chromosome variants]]
+
+Yue JX, Li J, Aigrain L, Hallin J, Persson K, Oliver K, Bergström A, Coupland P, Warringer J, Lagomarsino MC, Fischer G, Durbin R, Liti G.
+
+Nat Genet. 2017 Jun;49(6):913-924. doi:10.1038/ng.3847
+
+Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
+
+[[!pmid 28416820 desc="Yeast subtelomeres accumulate structural variants."]]

Café hier
diff --git a/biblio/31308546.mdwn b/biblio/31308546.mdwn
new file mode 100644
index 00000000..fd5b98d7
--- /dev/null
+++ b/biblio/31308546.mdwn
@@ -0,0 +1,14 @@
+[[!meta title="Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression."]]
+[[!tag Drosophila chromosome variants]]
+
+Ghavi-Helm Y, Jankowski A, Meiers S, Viales RR, Korbel JO, Furlong EEM.
+
+Nat Genet. 2019 Aug;51(8):1272-1282. doi:10.1038/s41588-019-0462-3
+
+Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression.
+
+[[!pmid 31308546 desc="Sequencing of balancer chromosomes.  Allele-specific
+RNA-seq, Hi-C and Capture-C.  “Genes with changes in their expression have a
+small but significant enrichment for differential promoter contacts”, but the
+converse is not true.  “Loss of long-range chromatin loops has little impact on
+gene expression.”"]]

Tunicate cellulose.
diff --git a/biblio/31369239.mdwn b/biblio/31369239.mdwn
new file mode 100644
index 00000000..7b8f19f7
--- /dev/null
+++ b/biblio/31369239.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Continuous Meter-Scale Synthesis of Weavable Tunicate Cellulose/Carbon Nanotube Fibers for High-Performance Wearable Sensors."]]
+[[!tag cellulose]]
+
+Cho SY, Yu H, Choi J, Kang H, Park S, Jang JS, Hong HJ, Kim ID, Lee SK, Jeong HS, Jung HT.
+
+ACS Nano. 2019 Aug 2. doi:10.1021/acsnano.9b03971
+
+Continuous Meter-Scale Synthesis of Weavable Tunicate Cellulose/Carbon Nanotube Fibers for High-Performance Wearable Sensors.
+
+[[!pmid 31369239 desc="Application of tunicate cellulose to wearable sensors."]]
diff --git a/tags/cellulose.mdwn b/tags/cellulose.mdwn
index b6209c32..870867f3 100644
--- a/tags/cellulose.mdwn
+++ b/tags/cellulose.mdwn
@@ -1,4 +1,8 @@
 [[!meta title="pages tagged cellulose"]]
 
-[[!inline pages="tagged(cellulose)" actions="no" archive="yes"
-feedshow=10]]
+** In construction **
+
+Tunicate cellulose has potential applications, such as the synthesis of
+weavable fibers for wearable sensors ([[Cho and coll., 2019|biblio/31369239]]).
+
+[[!inline pages="tagged(cellulose)" limit=0]]

Add details.
diff --git a/biblio/43261846.mdwn b/biblio/43261846.mdwn
index 73a7f772..8b8d9fd0 100644
--- a/biblio/43261846.mdwn
+++ b/biblio/43261846.mdwn
@@ -7,4 +7,4 @@ Zeitschrift für Morphologie und Ökologie der Tiere Vol. 41, No. 1 (20.Mai 1952
 
 Untersuchungen über die Gehäusebildung bei Appendicularien (Oikopleura dioica Fol)
 
-[Reports 3 haploid chromosomes in sperm and oocytes, one beign longer than the others.  Also reports an observation of 7 chromosomes in a somatic mitotic cell.](https://www.jstor.org/stable/43261846)
+[Reports 3 haploid chromosomes in sperm and oocytes, one beign longer than the others.  Also reports an observation of 7 chromosomes in a somatic mitotic cell. “Die zur Untersuchung benutzten Tiere stammten ausschließlich aus dem Wattenmeer der Deutschen Bucht.” (all animals were collected from the Wadden sea)](https://www.jstor.org/stable/43261846)

Dans le train.
diff --git a/biblio/31366885.mdwn b/biblio/31366885.mdwn
new file mode 100644
index 00000000..8d89daa4
--- /dev/null
+++ b/biblio/31366885.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids."]]
+[[!tag HPV evolution]]
+
+Kazlauskas D, Varsani A, Koonin EV, Krupovic M.
+
+Nat Commun. 2019 Jul 31;10(1):3425. doi:10.1038/s41467-019-11433-0
+
+Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids.
+
+[[!pmid 31366885 desc="Suggests that papillomaviruses evolved from single-strand DNA viruses, which evolved from bacterial plasmids."]]

Syntax
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 4060c0c5..365af405 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -455,7 +455,7 @@ Ecology
    2017|biblio/10.1080_00222933.2017.1293180]]).
  - In the northern south China sea, _O. longicauda_ and _O. rufescens_ were
    reported to be more abundant than _O. dioica_ in 2006 by ([[Li and coll.,
-   2012|biblio/10.1007_s13131-012-0243-7.mdwn]]).
+   2012|biblio/10.1007_s13131-012-0243-7]]).
  - _O. dioica_ was reported in the bay of Bengal by [[Bhavanarayana and
    Ganapati in 1972|biblio/10.1007_BF03045329]].
 

Café
diff --git a/biblio/18490654.mdwn b/biblio/18490654.mdwn
new file mode 100644
index 00000000..bd197ea2
--- /dev/null
+++ b/biblio/18490654.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Embryology of a planktonic tunicate reveals traces of sessility."]]
+[[!tag Oikopleura]]
+
+Proc Natl Acad Sci U S A. 2008 May 20;105(20):7229-34. doi:10.1073/pnas.0710196105
+
+Stach T, Winter J, Bouquet JM, Chourrout D, Schnabel R.
+
+Embryology of a planktonic tunicate reveals traces of sessility.
+
+[[!pmid 18490654 desc="“Clonal organization of the tissues is essentially invariant among individuals”"]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index b06aabd6..4060c0c5 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -259,6 +259,9 @@ Tools
 Development
 -----------
 
+ - First embryonic cleavages are deterministic and “Clonal organization of the
+   tissues is essentially invariant among individuals” ([[Stach and coll.,
+   2008|biblio/18490654]]).
  - Generation times shortens when temperature rises.  First spawnings are seen
    on day 6 at 14.2 °C, and on day 8 at 17.2 °C ([[Bouquet and coll.,
    2018|biblio/29298334]]).  Reported generation times in the litterature: 149 ± 2

Café
diff --git a/biblio/30905687.mdwn b/biblio/30905687.mdwn
new file mode 100644
index 00000000..3994342a
--- /dev/null
+++ b/biblio/30905687.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Gap junction-dependent coordination of intercellular calcium signalling in the developing appendicularian tunicate Oikopleura dioica."]]
+[[!tag Oikopleura]]
+
+Dev Biol. 2019 Jun 1;450(1):9-22. doi:10.1016/j.ydbio.2019.03.006
+
+Mikhaleva Y, Tolstenkov O, Glover JC.
+
+Gap junction-dependent coordination of intercellular calcium signalling in the developing appendicularian tunicate Oikopleura dioica.
+
+[[!pmid 30905687 desc="Calcium waves observed with GCaMP6.  Each wave is preceded by a “minipeak”.  Two connexins (CxA and CxB) are expressed during embyogenesis.  ”Knockdown of both CxA and CxB mRNA severely disrupts Ca2+ wave propagation and thereby also synchronization.“"]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 3e23f267..b06aabd6 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -178,6 +178,8 @@ Genes and pathways
  - Duplications in the Rab family: Rab5/17, Rab6, Rab7, Rab10, Rab35.  The EF-Rab chimera
    Rab46 is kept ([[Coppola and coll., 2019|biblio/31028425]]).  See below for the losses. 
  - INCENP and Plk1 are duplicated ([[Feng and coll., 2019|biblio/31306061]]).
+ - Two connexins, CxA and CxB are expressed during embyogenesis ([[Mikhaleva,
+   Tolstenkov and Glover 2019|biblio/30905687]]).
 
 ### Lost
 
@@ -286,6 +288,9 @@ Development
    who noted that it is exceptional in invertebrates, and hypothethise that it may
    be caused by neofunctionalisation (house production, ...) or by the small size of
    the genome (doubling the genes would then double the amount of regulatory sequences).
+ - Regular calcium waves are pulsing during embyogenesis.  Their propagation and
+   synchronicity is severly disrupted by the knockdown of the connexins CxA and CxB
+   ([[Mikhaleva, Tolstenkov and Glover 2019|biblio/30905687]]).
  - The tandem _propA_ and _propB_ genes control directly or indirectly _oik41a_
    and proper development of the house-secreting epithelium ([[Mikhaleva et
    al., 2018|biblio/30217597]]).

Café aujourdhui
diff --git a/biblio/10.1007_BF03045329.mdwn b/biblio/10.1007_BF03045329.mdwn
new file mode 100644
index 00000000..d94bddea
--- /dev/null
+++ b/biblio/10.1007_BF03045329.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Distribution of pelagic tunicates in the western part of the Bay of Bengal"]]
+[[!tag Oikopleura]]
+
+P. V. Bhavanarayana, P. N. Ganapati
+
+Proceedings of the Indian Academy of Sciences - Section B (1972) 75: 1.
+
+Distribution of pelagic tunicates in the western part of the Bay of Bengal
+
+[[!doi 10.1007/BF03045329 desc="O. dioica reported in the bay of Bengal."]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 7267b640..3e23f267 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -448,5 +448,7 @@ Ecology
  - In the northern south China sea, _O. longicauda_ and _O. rufescens_ were
    reported to be more abundant than _O. dioica_ in 2006 by ([[Li and coll.,
    2012|biblio/10.1007_s13131-012-0243-7.mdwn]]).
+ - _O. dioica_ was reported in the bay of Bengal by [[Bhavanarayana and
+   Ganapati in 1972|biblio/10.1007_BF03045329]].
 
 [[!inline pages="tagged(Oikopleura)" actions="no" limit=0]]

Café aujourdhui
diff --git a/biblio/10.5134_174644.mdwn b/biblio/10.5134_174644.mdwn
new file mode 100644
index 00000000..20f9c4f9
--- /dev/null
+++ b/biblio/10.5134_174644.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Studies on the distribution of appendicularians and some thaliaceans of the North Pacific, with some morphological notes."]]
+[[!tag Oikopleura]]
+
+Tokioka, Takasi
+
+Seto Mar. Biol. Lab., 1960, 3, 130–221.
+
+Studies on the distribution of appendicularians and some thaliaceans of the North Pacific, with some morphological notes.
+
+[[!doi 10.5134/174644 desc="Multiple records of O. dioica in the North Pacific."]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index daa9cf3e..7267b640 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -401,6 +401,7 @@ Ecology
  - In California, _O. dioica_ was reported by C. Essenberg
    ([[1922|biblio/1929090]]) to be rare in summer's warm (> 20ºC) waters and
    more abundant in winter's cool (13~16 ºC) waters.
+ - _O. dioica_ was found throurought the North Pacific by ([[Tokioka (1960)|biblio/10.5134_174644]]).
  - _O. dioica_ has “a very large mutation rate, and/or a very large effective
    population size” ([[Denoeud et al., 2010|biblio/21097902]], according to a study
    of silent and non-silent substitution rates in coding sequences).

creating tag page tags/H3S31p
diff --git a/tags/H3S31p.mdwn b/tags/H3S31p.mdwn
new file mode 100644
index 00000000..19a310aa
--- /dev/null
+++ b/tags/H3S31p.mdwn
@@ -0,0 +1,4 @@
+[[!meta title="pages tagged H3S31p"]]
+
+[[!inline pages="tagged(H3S31p)" actions="no" archive="yes"
+feedshow=10]]

creating tag page tags/H3T3p
diff --git a/tags/H3T3p.mdwn b/tags/H3T3p.mdwn
new file mode 100644
index 00000000..444999ab
--- /dev/null
+++ b/tags/H3T3p.mdwn
@@ -0,0 +1,4 @@
+[[!meta title="pages tagged H3T3p"]]
+
+[[!inline pages="tagged(H3T3p)" actions="no" archive="yes"
+feedshow=10]]

Café hier
diff --git a/biblio/31306061.mdwn b/biblio/31306061.mdwn
new file mode 100644
index 00000000..5c63f377
--- /dev/null
+++ b/biblio/31306061.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Switching of INCENP paralogs controls transitions in mitotic chromosomal passenger complex functions."]]
+[[!tag Oikopleura centromere H3T3p H3S28p H3S10p H3S31p H3K4me2 H3K9me3]]
+
+Cell Cycle. 2019 Jul 15:1-20. doi:10.1080/15384101.2019.1634954
+
+Feng H, Raasholm M, Moosmann A, Campsteijn C, Thompson EM.
+
+Switching of INCENP paralogs controls transitions in mitotic chromosomal passenger complex functions.
+
+[[!pmid 31306061 desc="Components of the constitutive centromere-associated network (CCAN) at the inner kinetochore seem to be missing in the genome.  H3T3p and H3S28p mark inner centromeric regions (single spots) and H3T11p mark outer centromeric regions (pairs of spots).  Fluorescent microscopy pictures supporting a 2 × 3 karyotype."]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 805ba5da..daa9cf3e 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -63,6 +63,9 @@ Genome
    There are also intriguing observations of somatic mitotic cells with 7
    chromosomes ([[Körner, 1952|biblio/43261846]]) and meiotic cells with
    8 haploid chromosomes ([[Colombera & Fenaux, 1973|biblio/10.1080_11250007309429248]]).
+ - Several manuscripts using animals from the SARS laboratory include
+   fluorescent microscopy pictures supporting the 3 × 2 karyotype.  For instance:
+   centromere marking in [[Feng and coll., 2019|biblio/31306061]].
  - Each cell only contains 70 fg of DNA ([Animal Genome Size Database](http://www.genomesize.com/result_species.php?id=1308)).
  - Genome size estimated to 72 ± 13 Mb (min 32.6~65 Mb) by [[Seo et al,
    2001|biblio/11752568]].  A 70.4 Mb genome "reference assembly" was later
@@ -174,6 +177,7 @@ Genes and pathways
    retrotransposition.
  - Duplications in the Rab family: Rab5/17, Rab6, Rab7, Rab10, Rab35.  The EF-Rab chimera
    Rab46 is kept ([[Coppola and coll., 2019|biblio/31028425]]).  See below for the losses. 
+ - INCENP and Plk1 are duplicated ([[Feng and coll., 2019|biblio/31306061]]).
 
 ### Lost
 
@@ -198,7 +202,9 @@ Genes and pathways
  - More than 50 % of the Rab family is lost ([[Coppola and coll., 2019|biblio/31028425]]):
    Rab4, Rab7L1, Rab9, Rab19/43, Rab21 Rab26/37, Rab28, Ift27, RabX1 and the
    the EF-rab chimera Rasef and EFcab4/Rab44.
-
+ - Components of the constitutive centromere-associated network (CCAN) of the
+   inner kinetochore cound not be found in the genome by ([[Feng and coll.,
+   2019|biblio/31306061]]).
 
 Epigenome
 ---------

Café
diff --git a/biblio/16354750.mdwn b/biblio/16354750.mdwn
new file mode 100644
index 00000000..c47b96a1
--- /dev/null
+++ b/biblio/16354750.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis."]]
+[[!tag Ciona chromosome]]
+
+Genome Res. 2006 Feb;16(2):297-303 doi:10.1101/gr.4156606
+
+Shoguchi E, Kawashima T, Satou Y, Hamaguchi M, Sin-I T, Kohara Y, Putnam N, Rokhsar DS, Satoh N.
+
+Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis.
+
+[[!pmid 16354750 desc="The short arm of chromosome 4, 5 and 6 contains rDNA clusters."]]

Karyotyping in Ciona
diff --git a/biblio/14993826.mdwn b/biblio/14993826.mdwn
new file mode 100644
index 00000000..a33525b8
--- /dev/null
+++ b/biblio/14993826.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Fluorescent in situ hybridization to ascidian chromosomes."]]
+[[!tag Ciona chromosome]]
+
+Zoolog Sci. 2004 Feb;21(2):153-7 doi:10.2108/zsj.21.153
+
+Shoguchi E1, Ikuta T, Yoshizaki F, Satou Y, Satoh N, Asano K, Saiga H, Nishikata T.
+
+Fluorescent in situ hybridization to ascidian chromosomes.
+
+[[!pmid 14993826 desc="“Embryos at three different developmental stages (32-cell embryos, 64-cell embryos and gastrulae) were used to produce metaphase spreads, although treatment of 32-cell embryos and 64-cell embryos with 0.05% colchicine (Sigma) in seawater caused aggregated and disorganized chromosomes. After treatment with colchicine for 20–30 min, embryos were transferred to a 1.5-ml microfuge tube, to which cold methanol:glacial acetic acid (3:1) fixative was added (chilled on ice). The fixative was changed twice over a period of 1 hr and once after overnight (embryos kept at 4°C). The specimens were then stored in fixative at 4°C.”"]]

privés de dessert
diff --git a/biblio/24695788.mdwn b/biblio/24695788.mdwn
new file mode 100644
index 00000000..43ef5d1a
--- /dev/null
+++ b/biblio/24695788.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Lifespan extension in a semelparous chordate occurs via developmental growth arrest just prior to meiotic entry."]]
+[[!tag Oikopleura H3S28p]]
+
+PLoS One. 2014 Apr 2;9(4):e93787. doi:10.1371/journal.pone.0093787
+
+Subramaniam G, Campsteijn C, Thompson EM.
+
+Lifespan extension in a semelparous chordate occurs via developmental growth arrest just prior to meiotic entry.
+
+[[!pmid 24695788 desc="Growth arrest (GA) discovered by culturing animals in crowded conditions, but can also be striggered by reduction of food intake before D4.  After that, starvation reduces the number of gametes produced instead of inducing GA.  In GA, cell cycle stops in both the somatic and germ lines.  GA can also be induced by the TOR inhibitor CCI-779.  Animals in GA can survice up to ~18 days at 15°C."]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index ab9ad739..805ba5da 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -260,6 +260,10 @@ Development
    culture conditions might differ.
  - Increased food abundance increases egg number but does not change diameter nor
    generation time ([[Troedsson and coll., 2002|biblio/10.3354_meps243083]]).
+   Food reduction before day 4 causes growth arrest (GA), in which all cell cycles
+   eventually pause.  Animals in GA can survive ~18 days at 15°C.  GA can also be
+   induced by inhibiting the TOR pathway ([[Subramaniam, Campsteijn and Thompson,
+   2014|biblio/24695788]]).
  - Colchicine treatment induced early differenciation of the oocytes
    ([[Ganot, Kallesøe, Thompson (2007)|biblio/17123503]]).
  - Telomeres are localised at the nuclear envelope and do not overlap with nuclear

Et pendant ce temps, Maholo travaille...
diff --git a/biblio/15114417.mdwn b/biblio/15114417.mdwn
new file mode 100644
index 0000000..5d7c41a
--- /dev/null
+++ b/biblio/15114417.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Complete mtDNA of Ciona intestinalis reveals extensive gene rearrangement and the presence of an atp8 and an extra trnM gene in ascidians."]]
+[[!tag mitochondrion]]
+
+J Mol Evol. 2004 Apr;58(4):376-89 doi:10.1007/s00239-003-2559-6
+
+Gissi C, Iannelli F, Pesole G.
+
+Complete mtDNA of Ciona intestinalis reveals extensive gene rearrangement and the presence of an atp8 and an extra trnM gene in ascidians.
+
+[[!pmid 15114417 desc="Gene order varies even within the _Ciona_ genus.  A short _atp8_ gene is found in _Ciona_ and _Halocynthia_."]]
diff --git a/tags/Ciona.mdwn b/tags/Ciona.mdwn
index 3238950..eee0685 100644
--- a/tags/Ciona.mdwn
+++ b/tags/Ciona.mdwn
@@ -39,6 +39,9 @@ Speciation is estimated to have happened during the Pliocene (≈ 3.8 Ma); a
 recent introgression then happened 15,000 years ago ([[Roux and coll.,
 2013|biblio/23564941]]).
 
+Mitochondrial gene order differs even within the _Ciona_ genus ([[Gissi,
+Iannelli and Pesole 2004|biblio/15114417]]).
+
 _Ciona savignyi_ uses the same mitochodrial genetic code as of other ascidians
 studied before ([[Yokobori, Watanabe and Oshima, 2003|biblio/14738316]]).
 
diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn
index ebde925..693212d 100644
--- a/tags/mitochondrion.mdwn
+++ b/tags/mitochondrion.mdwn
@@ -29,12 +29,18 @@ https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code
  - Another case, unrelated, of reassignment to glycin is know: UGA -> Gly in
    SR1 bacteria ([[Campbell and coll, 2013|biblio/23509275]]).
 
-### Gene order
 
+### Genes 
+
+ - All protein-coding genes are transcribed from the same strand.  See for
+   instance ([[Gissi, Iannelli and Pesole, 2004|biblio/15114417]]).
  - _cox2_ and _cytb_ are usually adjascent in tunicates, but they were found
    to be separated in the ascidians _Herdmania momus_ ([[Singh and coll,
    2009|biblio/19922605]]) or _Lissoclinum patella_ ([[Kwan and coll,
    2014|biblio/24788869]]).
+ - Contrary to statements in some early publication, the _atp8_ gene can be
+   found in ascidians ([[Gissi, Iannelli and Pesole, 2004|biblio/15114417]]).
+
 
 ### Transcription
 

Pendant que LabDroid travaille...
diff --git a/biblio/12915488.mdwn b/biblio/12915488.mdwn
new file mode 100644
index 0000000..0cd3248
--- /dev/null
+++ b/biblio/12915488.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Transcript mapping and genome annotation of ascidian mtDNA using EST data."]]
+[[!tag mitochondrion]]
+
+Genome Res. 2003 Sep;13(9):2203-12. doi:10.1101/gr.1227803
+
+Gissi C, Pesole G.
+
+Transcript mapping and genome annotation of ascidian mtDNA using EST data.
+
+[[!pmid 12915488 desc="Observation of polycistronic precursor and mature RNAs in ascidians."]]
diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn
index 7c9a5b6..ebde925 100644
--- a/tags/mitochondrion.mdwn
+++ b/tags/mitochondrion.mdwn
@@ -1,14 +1,14 @@
 [[!meta title="pages tagged mitochondrion"]]
 
-The ascidian genetic code
--------------------------
+The tunicate mitochondrial genome
+---------------------------------
+
+### Genetic code
 
 https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG13
 
 https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code
 
-(work in progress)
-
  - [[Yokobori and coll, 1993|biblio/8381878]] sequenced _cox1_ in
    _Halocynthia roretzi_ and suggested that it may use a different
    genetic code.  The same year, [[Durrheim and coll. |biblio/8393993]] made
@@ -29,11 +29,17 @@ https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code
  - Another case, unrelated, of reassignment to glycin is know: UGA -> Gly in
    SR1 bacteria ([[Campbell and coll, 2013|biblio/23509275]]).
 
+### Gene order
+
  - _cox2_ and _cytb_ are usually adjascent in tunicates, but they were found
    to be separated in the ascidians _Herdmania momus_ ([[Singh and coll,
    2009|biblio/19922605]]) or _Lissoclinum patella_ ([[Kwan and coll,
    2014|biblio/24788869]]).
 
-To read: Durrheim/8393993 (P. stol code),  Gissi/12915488 (alt. start codon)
+### Transcription
+
+ - EST data shows the presence of polycistronic precursor and mature RNAs
+   ([[Gissi & Pessole, 2003|biblio/12915488]]).
+
 
 [[!inline pages="tagged(mitochondrion)" limit=0]]

Café
diff --git a/biblio/8393993.mdwn b/biblio/8393993.mdwn
new file mode 100644
index 0000000..17e9309
--- /dev/null
+++ b/biblio/8393993.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Nucleotide sequence of cytochrome oxidase (subunit III) from the mitochondrion of the tunicate Pyura stolonifera: evidence that AGR encodes glycine."]]
+[[!tag mitochondrion]]
+
+Durrheim GA, Corfield VA, Harley EH, Ricketts MH.
+
+Nucleic Acids Res. 1993 Jul 25;21(15):3587-8.
+
+Nucleotide sequence of cytochrome oxidase (subunit III) from the mitochondrion of the tunicate Pyura stolonifera: evidence that AGR encodes glycine.
+
+[[!pmid 8393993 desc="AGR -> Gly in another tunicate"]]
diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn
index cbf7c60..7c9a5b6 100644
--- a/tags/mitochondrion.mdwn
+++ b/tags/mitochondrion.mdwn
@@ -11,7 +11,8 @@ https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code
 
  - [[Yokobori and coll, 1993|biblio/8381878]] sequenced _cox1_ in
    _Halocynthia roretzi_ and suggested that it may use a different
-   genetic code.
+   genetic code.  The same year, [[Durrheim and coll. |biblio/8393993]] made
+   the same observation on the _cox3_ sequence of _Pyura stolonifera_.
  - [[Delarbre and coll, 1997|biblio/9254918]] proposed an AGR -> Gly
    reassignment in amphioxus, based on a AGG/GGG polymorphism, and
    [[Spruyt and coll, 1998|biblio/9628930]] found a putative TCT (Gly) tRNA

updated PO files
diff --git "a/Debian/debi\303\242neries/inboxZero.en.po" "b/Debian/debi\303\242neries/inboxZero.en.po"
index d9d4b4c..74b76c8 100644
--- "a/Debian/debi\303\242neries/inboxZero.en.po"
+++ "b/Debian/debi\303\242neries/inboxZero.en.po"
@@ -6,14 +6,14 @@
 msgid ""
 msgstr ""
 "Project-Id-Version: \n"
-"POT-Creation-Date: 2019-07-04 12:53+0000\n"
+"POT-Creation-Date: 2019-07-04 12:58+0000\n"
 "PO-Revision-Date: 2019-07-04 21:57+0900\n"
+"Last-Translator: Charles Plessy <toto@example.com>\n"
+"Language-Team: \n"
 "Language: en\n"
 "MIME-Version: 1.0\n"
 "Content-Type: text/plain; charset=UTF-8\n"
 "Content-Transfer-Encoding: 8bit\n"
-"Last-Translator: Charles Plessy <toto@example.com>\n"
-"Language-Team: \n"
 "X-Generator: Poedit 1.8.11\n"
 
 #. type: Plain text

Inbox zero
diff --git "a/Debian/debi\303\242neries/inboxZero.en.po" "b/Debian/debi\303\242neries/inboxZero.en.po"
index c1610ac..d9d4b4c 100644
--- "a/Debian/debi\303\242neries/inboxZero.en.po"
+++ "b/Debian/debi\303\242neries/inboxZero.en.po"
@@ -3,38 +3,38 @@
 # This file is distributed under the same license as the PACKAGE package.
 # FIRST AUTHOR <EMAIL@ADDRESS>, YEAR.
 #
-#, fuzzy
 msgid ""
 msgstr ""
-"Project-Id-Version: PACKAGE VERSION\n"
+"Project-Id-Version: \n"
 "POT-Creation-Date: 2019-07-04 12:53+0000\n"
-"PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n"
-"Last-Translator: FULL NAME <EMAIL@ADDRESS>\n"
-"Language-Team: LANGUAGE <LL@li.org>\n"
-"Language: \n"
+"PO-Revision-Date: 2019-07-04 21:57+0900\n"
+"Language: en\n"
 "MIME-Version: 1.0\n"
 "Content-Type: text/plain; charset=UTF-8\n"
 "Content-Transfer-Encoding: 8bit\n"
+"Last-Translator: Charles Plessy <toto@example.com>\n"
+"Language-Team: \n"
+"X-Generator: Poedit 1.8.11\n"
 
 #. type: Plain text
 #, no-wrap
 msgid "[[!meta date=\"Thu, 04 Jul 2019 21:52:28 +0900\"]]\n"
-msgstr ""
+msgstr "[[!meta date=\"Thu, 04 Jul 2019 21:52:28 +0900\"]]\n"
 
 #. type: Plain text
 #, no-wrap
 msgid "[[!meta updated=\"Thu, 04 Jul 2019 21:52:28 +0900\"]]\n"
-msgstr ""
+msgstr "[[!meta updated=\"Thu, 04 Jul 2019 21:52:28 +0900\"]]\n"
 
 #. type: Plain text
 #, no-wrap
 msgid "[[!tag Debian]]\n"
-msgstr ""
+msgstr "[[!tag Debian]]\n"
 
 #. type: Plain text
 #, no-wrap
 msgid "[[!meta title=\"Zéro inbox\"]]\n"
-msgstr ""
+msgstr "[[!meta title=\"Inbox zero\"]]\n"
 
 #. type: Plain text
 msgid ""
@@ -44,3 +44,7 @@ msgid ""
 "l'ai fait, ça ne m'a pas servi à grand chose au final.  Alors envoyez-moi un "
 "rappel si vous attendez une réponse de ma part !"
 msgstr ""
+"I accidentally erased all the emails in my inbox.  This is very easy with "
+"[mutt](http://www.mutt.org/).  I have some experience in recovering files, "
+"but last time I did, it was not so useful in the end.  So please send me a "
+"reminder if you were expecting some answer from me!"

updated PO files
diff --git "a/Debian/debi\303\242neries/inboxZero.en.po" "b/Debian/debi\303\242neries/inboxZero.en.po"
new file mode 100644
index 0000000..c1610ac
--- /dev/null
+++ "b/Debian/debi\303\242neries/inboxZero.en.po"
@@ -0,0 +1,46 @@
+# SOME DESCRIPTIVE TITLE
+# Copyright (C) YEAR Free Software Foundation, Inc.
+# This file is distributed under the same license as the PACKAGE package.
+# FIRST AUTHOR <EMAIL@ADDRESS>, YEAR.
+#
+#, fuzzy
+msgid ""
+msgstr ""
+"Project-Id-Version: PACKAGE VERSION\n"
+"POT-Creation-Date: 2019-07-04 12:53+0000\n"
+"PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n"
+"Last-Translator: FULL NAME <EMAIL@ADDRESS>\n"
+"Language-Team: LANGUAGE <LL@li.org>\n"
+"Language: \n"
+"MIME-Version: 1.0\n"
+"Content-Type: text/plain; charset=UTF-8\n"
+"Content-Transfer-Encoding: 8bit\n"
+
+#. type: Plain text
+#, no-wrap
+msgid "[[!meta date=\"Thu, 04 Jul 2019 21:52:28 +0900\"]]\n"
+msgstr ""
+
+#. type: Plain text
+#, no-wrap
+msgid "[[!meta updated=\"Thu, 04 Jul 2019 21:52:28 +0900\"]]\n"
+msgstr ""
+
+#. type: Plain text
+#, no-wrap
+msgid "[[!tag Debian]]\n"
+msgstr ""
+
+#. type: Plain text
+#, no-wrap
+msgid "[[!meta title=\"Zéro inbox\"]]\n"
+msgstr ""
+
+#. type: Plain text
+msgid ""
+"J'ai effacé par accident toute la boîte de réception de mes courriels.  "
+"C'est très facile avec [mutt](http://www.mutt.org/).  J'ai quelque "
+"expérience dans la récupération de fichiers mais la dernière fois que je "
+"l'ai fait, ça ne m'a pas servi à grand chose au final.  Alors envoyez-moi un "
+"rappel si vous attendez une réponse de ma part !"
+msgstr ""

zéro courriel.
diff --git "a/Debian/debi\303\242neries/inboxZero.mdwn" "b/Debian/debi\303\242neries/inboxZero.mdwn"
new file mode 100644
index 0000000..8eb3299
--- /dev/null
+++ "b/Debian/debi\303\242neries/inboxZero.mdwn"
@@ -0,0 +1,11 @@
+[[!meta date="Thu, 04 Jul 2019 21:52:28 +0900"]]
+[[!meta updated="Thu, 04 Jul 2019 21:52:28 +0900"]]
+[[!tag Debian]]
+
+[[!meta title="Zéro inbox"]]
+
+J'ai effacé par accident toute la boîte de réception de mes courriels.  C'est
+très facile avec [mutt](http://www.mutt.org/).  J'ai quelque expérience dans la
+récupération de fichiers mais la dernière fois que je l'ai fait, ça ne m'a pas
+servi à grand chose au final.  Alors envoyez-moi un rappel si vous attendez une
+réponse de ma part !

Another broken cox2-cytb pair.
diff --git a/biblio/24788869.mdwn b/biblio/24788869.mdwn
new file mode 100644
index 0000000..598272a
--- /dev/null
+++ b/biblio/24788869.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Host Control of Symbiont Natural Product Chemistry in Cryptic Populations of the Tunicate Lissoclinum patella"]]
+[[!tag mitochondrion]]
+
+Kwan JC, Tianero MD, Donia MS, Wyche TP, Bugni TS, Schmidt EW.
+
+PLoS One. 2014 May 2;9(5):e95850. doi:10.1371/journal.pone.0095850
+
+Host Control of Symbiont Natural Product Chemistry in Cryptic Populations of the Tunicate Lissoclinum patella
+
+[[!pmid 24788869 desc="Another ascidian where cox2 and cytb are not adjascent.  This ascidian has an endosymbiont."]]
diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn
index f4b8903..cbf7c60 100644
--- a/tags/mitochondrion.mdwn
+++ b/tags/mitochondrion.mdwn
@@ -29,7 +29,9 @@ https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code
    SR1 bacteria ([[Campbell and coll, 2013|biblio/23509275]]).
 
  - _cox2_ and _cytb_ are usually adjascent in tunicates, but they were found
-   to be separated in ([[Singh and coll, 2009|biblio/19922605]]).
+   to be separated in the ascidians _Herdmania momus_ ([[Singh and coll,
+   2009|biblio/19922605]]) or _Lissoclinum patella_ ([[Kwan and coll,
+   2014|biblio/24788869]]).
 
 To read: Durrheim/8393993 (P. stol code),  Gissi/12915488 (alt. start codon)
 

The cox2 cytb pair.
diff --git a/biblio/19922605.mdwn b/biblio/19922605.mdwn
new file mode 100644
index 0000000..cbbd154
--- /dev/null
+++ b/biblio/19922605.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny"]]
+[[!tag mitochondrion]]
+
+Tiratha Raj Singh, Georgia Tsagkogeorga, Frédéric Delsuc, Samuel Blanquart, Noa Shenkar, Yossi Loya, Emmanuel JP Douzery and Dorothée Huchon
+
+BMC Genomics. 2009 Nov 17;10:534. doi: 10.1186/1471-2164-10-534
+
+Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny
+
+[[!pmid 19922605 desc="The cox2-cytb pair, usually found in tunicates, is separated in the solitary ascidian _Herdmania momus_."]]
diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn
index 6204677..f4b8903 100644
--- a/tags/mitochondrion.mdwn
+++ b/tags/mitochondrion.mdwn
@@ -28,6 +28,9 @@ https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code
  - Another case, unrelated, of reassignment to glycin is know: UGA -> Gly in
    SR1 bacteria ([[Campbell and coll, 2013|biblio/23509275]]).
 
+ - _cox2_ and _cytb_ are usually adjascent in tunicates, but they were found
+   to be separated in ([[Singh and coll, 2009|biblio/19922605]]).
+
 To read: Durrheim/8393993 (P. stol code),  Gissi/12915488 (alt. start codon)
 
 [[!inline pages="tagged(mitochondrion)" limit=0]]

thaliaceans
diff --git a/biblio/15619441.mdwn b/biblio/15619441.mdwn
new file mode 100644
index 0000000..56192e7
--- /dev/null
+++ b/biblio/15619441.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Complete nucleotide sequence of the mitochondrial genome of Doliolum nationalis with implications for evolution of urochordates."]]
+[[!tag mitochondrion]]
+
+Yokobori S, Oshima T, Wada H.
+
+Mol Phylogenet Evol. 2005 Feb;34(2):273-83. Epub 2004 Nov 19 doi:10.1016/j.ympev.2004.10.002
+
+Complete nucleotide sequence of the mitochondrial genome of Doliolum nationalis with implications for evolution of urochordates.
+
+[[!pmid 15619441 desc="Suggests that taliaceans also decode AGR as glycine."]]
diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn
index 4419ddc..6204677 100644
--- a/tags/mitochondrion.mdwn
+++ b/tags/mitochondrion.mdwn
@@ -22,6 +22,9 @@ https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code
    in _Halocynthia roretzi._.
  - [[Yokobori and coll, 1999|biblio/10581290]] sequenced the mitochondrial
    genome of _Halocynthia roretzi_ and found the predicted Gly tRNA.
+ - Sequence of a thaliacean (_Doliolum nationalis_) mitochondrial genome
+   suggests they also decode AGR as glycine ([[Yokobori, Oshima and Wada,
+   2005|biblio/15619441]]).
  - Another case, unrelated, of reassignment to glycin is know: UGA -> Gly in
    SR1 bacteria ([[Campbell and coll, 2013|biblio/23509275]]).
 

Café
diff --git a/biblio/10.1111_bij.12915.mdwn b/biblio/10.1111_bij.12915.mdwn
new file mode 100644
index 0000000..926b3c9
--- /dev/null
+++ b/biblio/10.1111_bij.12915.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="One tunic but more than one barcode: evolutionary insights from dynamic mitochondrial DNA in Salpa thompsoni (Tunicata: Salpida)"]]
+[[!tag mitochondrion]]
+
+William P. Goodall-Copestake
+
+Biological Journal of the Linnean Society, Volume 120, Issue 3, 1 March 2017, Pages 637–648, https://doi.org/10.1111/bij.12915
+
+One tunic but more than one barcode: evolutionary insights from dynamic mitochondrial DNA in Salpa thompsoni (Tunicata: Salpida)
+
+[[!doi 10.1111/bij.12915 desc="Found ”inverse PCR amplicons [that] could occur in vivo as single circular DNAs and/or as tandem repeats within a larger circular or linear molecule”"]]

Café
diff --git a/biblio/23509275.mdwn b/biblio/23509275.mdwn
new file mode 100644
index 0000000..17f4636
--- /dev/null
+++ b/biblio/23509275.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota."]]
+[[!tag mitochondrion]]
+
+Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5540-5. doi:10.1073/pnas.1303090110
+
+Campbell JH, O'Donoghue P, Campbell AG, Schwientek P, Sczyrba A, Woyke T, Söll D, Podar M.
+
+UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota.
+
+[[!pmid 23509275 desc="“Coexpression of SR1 glycyl-tRNA synthetase and tRNA(Gly)UCA in Escherichia coli yields significant β-galactosidase activity in vivo from a lacZ gene containing an in-frame TGA codon.”"]]
diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn
index 0ed77ef..4419ddc 100644
--- a/tags/mitochondrion.mdwn
+++ b/tags/mitochondrion.mdwn
@@ -22,6 +22,8 @@ https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code
    in _Halocynthia roretzi._.
  - [[Yokobori and coll, 1999|biblio/10581290]] sequenced the mitochondrial
    genome of _Halocynthia roretzi_ and found the predicted Gly tRNA.
+ - Another case, unrelated, of reassignment to glycin is know: UGA -> Gly in
+   SR1 bacteria ([[Campbell and coll, 2013|biblio/23509275]]).
 
 To read: Durrheim/8393993 (P. stol code),  Gissi/12915488 (alt. start codon)
 

Première suggestion ?
diff --git a/biblio/9254918.mdwn b/biblio/9254918.mdwn
new file mode 100644
index 0000000..89a0455
--- /dev/null
+++ b/biblio/9254918.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="The main features of the craniate mitochondrial DNA between the ND1 and the COI genes were established in the common ancestor with the lancelet."]]
+[[!tag mitochondrion]]
+
+Mol Biol Evol. 1997 Aug;14(8):807-13 doi:10.1093/oxfordjournals.molbev.a025821
+
+Delarbre C, Barriel V, Tillier S, Janvier P, Gachelin G.
+
+The main features of the craniate mitochondrial DNA between the ND1 and the COI genes were established in the common ancestor with the lancelet.
+
+[[!pmid 9254918 desc="Proposes AGR -> Gly based on AGG / GGG polymorphisms in the population."]]
diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn
index 4ada974..0ed77ef 100644
--- a/tags/mitochondrion.mdwn
+++ b/tags/mitochondrion.mdwn
@@ -12,7 +12,9 @@ https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code
  - [[Yokobori and coll, 1993|biblio/8381878]] sequenced _cox1_ in
    _Halocynthia roretzi_ and suggested that it may use a different
    genetic code.
- - [[Spruyt and coll, 1998|biblio/9628930]] found a putative TCT (Gly) tRNA
+ - [[Delarbre and coll, 1997|biblio/9254918]] proposed an AGR -> Gly
+   reassignment in amphioxus, based on a AGG/GGG polymorphism, and
+   [[Spruyt and coll, 1998|biblio/9628930]] found a putative TCT (Gly) tRNA
    in the mitochondrial genome of the amphioxus (in which they also show
    that the AGG codon is not used), but [[Boore, Daehler and Brown, 1999|biblio/10331267]]
    rebutted the suggestion of a AGA reassignment to Gly.

Café
diff --git a/biblio/10331267.mdwn b/biblio/10331267.mdwn
new file mode 100644
index 0000000..b05c8b2
--- /dev/null
+++ b/biblio/10331267.mdwn
@@ -0,0 +1,13 @@
+[[!meta title="Complete sequence, gene arrangement, and genetic code of mitochondrial DNA of the cephalochordate Branchiostoma floridae (Amphioxus)"]]
+[[!tag mitochondrion]]
+
+Mol Biol Evol. 1999 Mar;16(3):410-8 doi:10.1093/oxfordjournals.molbev.a026122
+
+Boore JL, Daehler LL, Brown WM.
+
+Complete sequence, gene arrangement, and genetic code of mitochondrial DNA of the cephalochordate Branchiostoma floridae (Amphioxus)
+
+[[!pmid 10331267 desc="AGA encodes serine in amphioxus mitochondrial DNA.  AGG
+is absent.  AGA and AGG are reduced in frequencey compared to the AGY serine
+codons, which suggests a that the common ancestor of chordates had a
+precondition for AGR reassignment."]]
diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn
index 6f88222..4ada974 100644
--- a/tags/mitochondrion.mdwn
+++ b/tags/mitochondrion.mdwn
@@ -14,7 +14,8 @@ https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code
    genetic code.
  - [[Spruyt and coll, 1998|biblio/9628930]] found a putative TCT (Gly) tRNA
    in the mitochondrial genome of the amphioxus (in which they also show
-   that the AGG codon is not used).
+   that the AGG codon is not used), but [[Boore, Daehler and Brown, 1999|biblio/10331267]]
+   rebutted the suggestion of a AGA reassignment to Gly.
  - [[Kondow and coll, 1999|biblio/10352185]] sequenced a Gly(U*CU) tRNA
    in _Halocynthia roretzi._.
  - [[Yokobori and coll, 1999|biblio/10581290]] sequenced the mitochondrial

Café
diff --git a/biblio/9628930.mdwn b/biblio/9628930.mdwn
new file mode 100644
index 0000000..c19dd00
--- /dev/null
+++ b/biblio/9628930.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates."]]
+[[!tag mitochondrion]]
+
+Spruyt N, Delarbre C, Gachelin G, Laudet V.
+
+Nucleic Acids Res. 1998 Jul 1;26(13):3279-85 doi:10.1093/nar/26.13.3279
+
+Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates.
+
+[[!pmid 9628930 desc="AGA translated to Gly as in tunicates.  Found a possible 23rd tRNA, with a TCT (Gly) anticodon.  AGG is not used."]]
diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn
index c9faaf1..6f88222 100644
--- a/tags/mitochondrion.mdwn
+++ b/tags/mitochondrion.mdwn
@@ -12,6 +12,9 @@ https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code
  - [[Yokobori and coll, 1993|biblio/8381878]] sequenced _cox1_ in
    _Halocynthia roretzi_ and suggested that it may use a different
    genetic code.
+ - [[Spruyt and coll, 1998|biblio/9628930]] found a putative TCT (Gly) tRNA
+   in the mitochondrial genome of the amphioxus (in which they also show
+   that the AGG codon is not used).
  - [[Kondow and coll, 1999|biblio/10352185]] sequenced a Gly(U*CU) tRNA
    in _Halocynthia roretzi._.
  - [[Yokobori and coll, 1999|biblio/10581290]] sequenced the mitochondrial

Syntax.
diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn
index 06a444d..c9faaf1 100644
--- a/tags/mitochondrion.mdwn
+++ b/tags/mitochondrion.mdwn
@@ -19,4 +19,4 @@ https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code
 
 To read: Durrheim/8393993 (P. stol code),  Gissi/12915488 (alt. start codon)
 
-[[!inline pages="tagged(mitochondrion) limit(0)"]]
+[[!inline pages="tagged(mitochondrion)" limit=0]]

The Ascidian mitochondrial code.
diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn
index cd21ac7..06a444d 100644
--- a/tags/mitochondrion.mdwn
+++ b/tags/mitochondrion.mdwn
@@ -1,3 +1,22 @@
 [[!meta title="pages tagged mitochondrion"]]
 
-[[!inline pages="tagged(mitochondrion)"]]
+The ascidian genetic code
+-------------------------
+
+https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG13
+
+https://en.wikipedia.org/wiki/Ascidian_mitochondrial_code
+
+(work in progress)
+
+ - [[Yokobori and coll, 1993|biblio/8381878]] sequenced _cox1_ in
+   _Halocynthia roretzi_ and suggested that it may use a different
+   genetic code.
+ - [[Kondow and coll, 1999|biblio/10352185]] sequenced a Gly(U*CU) tRNA
+   in _Halocynthia roretzi._.
+ - [[Yokobori and coll, 1999|biblio/10581290]] sequenced the mitochondrial
+   genome of _Halocynthia roretzi_ and found the predicted Gly tRNA.
+
+To read: Durrheim/8393993 (P. stol code),  Gissi/12915488 (alt. start codon)
+
+[[!inline pages="tagged(mitochondrion) limit(0)"]]

Show all articles.
diff --git a/tags/mitochondrion.mdwn b/tags/mitochondrion.mdwn
index a1cccdc..cd21ac7 100644
--- a/tags/mitochondrion.mdwn
+++ b/tags/mitochondrion.mdwn
@@ -1,4 +1,3 @@
 [[!meta title="pages tagged mitochondrion"]]
 
-[[!inline pages="tagged(mitochondrion)" actions="no" archive="yes"
-feedshow=10]]
+[[!inline pages="tagged(mitochondrion)"]]

Remove dangling tags.
diff --git a/tags/mitochodrion.mdwn b/tags/mitochodrion.mdwn
deleted file mode 100644
index eb7b524..0000000
--- a/tags/mitochodrion.mdwn
+++ /dev/null
@@ -1,4 +0,0 @@
-[[!meta title="pages tagged mitochodrion"]]
-
-[[!inline pages="tagged(mitochodrion)" actions="no" archive="yes"
-feedshow=10]]
diff --git a/tags/mitochondria.mdwn b/tags/mitochondria.mdwn
deleted file mode 100644
index c1caea0..0000000
--- a/tags/mitochondria.mdwn
+++ /dev/null
@@ -1,4 +0,0 @@
-[[!meta title="pages tagged mitochondria"]]
-
-[[!inline pages="tagged(mitochondria)" actions="no" archive="yes"
-feedshow=10]]

Correct tag.
diff --git a/biblio/8381878.mdwn b/biblio/8381878.mdwn
index fe4a3d1..bd7a6b9 100644
--- a/biblio/8381878.mdwn
+++ b/biblio/8381878.mdwn
@@ -1,5 +1,5 @@
 [[!meta title="Codons AGA and AGG are read as glycine in ascidian mitochondria."]]
-[[!tag mitochodrion]]
+[[!tag mitochondrion]]
 
 J Mol Evol. 1993 Jan;36(1):1-8. doi:10.1007/BF02407301
 

Café
diff --git a/biblio/23363705.mdwn b/biblio/23363705.mdwn
new file mode 100644
index 0000000..9e963a2
--- /dev/null
+++ b/biblio/23363705.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution."]]
+[[!tag centromere]]
+
+Genome Biol. 2013 Jan 30;14(1):R10. doi: 10.1186/gb-2013-14-1-r10
+
+Melters DP, Bradnam KR, Young HA, Telis N, May MR, Ruby JG, Sebra R, Peluso P, Eid J, Rank D, Garcia JF, DeRisi JL, Smith T, Tobias C, Ross-Ibarra J, Korf I, Chan SW.
+
+Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.
+
+[[!pmid 23363705 desc="Brute-force analysis assuming that the most abundant tandem repeat is a centromere.  Sequence conservation is limited to close species.  Similarity can be lost quickly (~10 MY) or can be kept for as long as ~50 MY.  High order repeat structures could be detected.  Discussees that “centromere DNA and CENH3 differences could introduce reproductive barriers, causing speciation”. "]]

CenH3
diff --git a/biblio/21756361.mdwn b/biblio/21756361.mdwn
index 4b8bc5b..005b2ba 100644
--- a/biblio/21756361.mdwn
+++ b/biblio/21756361.mdwn
@@ -7,4 +7,4 @@ BMC Evol Biol. 2011 Jul 15;11:208. doi: 10.1186/1471-2148-11-208.
 
 Moosmann A, Campsteijn C, Jansen PW, Nasrallah C, Raasholm M, Stunnenberg HG, Thompson EM.
 
-[[!pmid 21756361 desc="“47 histone genes (6 H4, 10 H3, 15 H2A, 11 H2B and 5 H1 genes) encoding 31 different histone proteins (2 H4, 6 H3, 11 H2A, 7 H2B and 5 H1) were identified.” “There is no H2AX homolog in O. dioica.” (H2AX is implicated in DNA repair)."]]
+[[!pmid 21756361 desc="“47 histone genes (6 H4, 10 H3, 15 H2A, 11 H2B and 5 H1 genes) encoding 31 different histone proteins (2 H4, 6 H3, 11 H2A, 7 H2B and 5 H1) were identified.” “There is no H2AX homolog in O. dioica.” (H2AX is implicated in DNA repair).  CenH3 is present."]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 09dad71..ab9ad73 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -142,8 +142,8 @@ Genes and pathways
    9–11 H4 genes, 11–14 H3 genes, 15–19 H2A genes, 18–20 H2B genes, and 4–7 H1
    genes” ([[Chioda, Eskeland and Thompson, 2002|biblio/12446815]]).  “47 histone
    genes (6 H4, 10 H3, 15 H2A, 11 H2B and 5 H1 genes) encoding 31 different
-   histone proteins (2 H4, 6 H3, 11 H2A, 7 H2B and 5 H1) were identified”
-   ([[Moosmann and coll., 2011|biblio/21756361]]).
+   histone proteins (2 H4, 6 H3, 11 H2A, 7 H2B and 5 H1) were identified”.
+   The centromeric CenH3 is present ([[Moosmann and coll., 2011|biblio/21756361]]).
  - 2 cellulose synthase genes, possibly acquired by horizontal gene transfer
    from an actinobacteria ([[Nakashima and coll., 2004|biblio/14740209]]), were
    found by [[Sagane et al. (2010)|biblio/20335363]] and [[Nakashima et al.

creating tag page tags/centromere
diff --git a/tags/centromere.mdwn b/tags/centromere.mdwn
new file mode 100644
index 0000000..f3ba342
--- /dev/null
+++ b/tags/centromere.mdwn
@@ -0,0 +1,4 @@
+[[!meta title="pages tagged centromere"]]
+
+[[!inline pages="tagged(centromere)" actions="no" archive="yes"
+feedshow=10]]

creating tag page tags/medaka
diff --git a/tags/medaka.mdwn b/tags/medaka.mdwn
new file mode 100644
index 0000000..b695fb5
--- /dev/null
+++ b/tags/medaka.mdwn
@@ -0,0 +1,4 @@
+[[!meta title="pages tagged medaka"]]
+
+[[!inline pages="tagged(medaka)" actions="no" archive="yes"
+feedshow=10]]

Hier
diff --git a/biblio/29184138.mdwn b/biblio/29184138.mdwn
new file mode 100644
index 0000000..9bcbf18
--- /dev/null
+++ b/biblio/29184138.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Centromere evolution and CpG methylation during vertebrate speciation."]]
+[[!tag medaka centromere speciation]]
+
+Ichikawa K, Tomioka S, Suzuki Y, Nakamura R, Doi K, Yoshimura J, Kumagai M, Inoue Y, Uchida Y, Irie N, Takeda H, Morishita S.
+
+Nat Commun. 2017 Nov 28;8(1):1833. doi:10.1038/s41467-017-01982-7
+
+Centromere evolution and CpG methylation during vertebrate speciation.
+
+[[!pmid desc="Comparison of centromere sequences between interfertile medaka strains that separated 18~25 My ago.  Also, within a species, homologous pairs of centromeres (derived from the same ancestral pre-teleost (350 My ago)  chromosome) were conserved, and acrocentric ones were shown to evolve slower."]]

H3S28p
diff --git a/biblio/29486709.mdwn b/biblio/29486709.mdwn
index 1f0a06f..185e431 100644
--- a/biblio/29486709.mdwn
+++ b/biblio/29486709.mdwn
@@ -1,5 +1,5 @@
 [[!meta title="Evidence for a centrosome-attracting body like structure in germ-soma segregation during early development, in the urochordate Oikopleura dioica."]]
-[[!tag Oikopleura localisation germ_line]]
+[[!tag Oikopleura H3S28p localisation germ_line]]
 
 Olsen LC, Kourtesis I, Busengdal H, Jensen MF, Hausen H, Chourrout D.
 

ptidéj
diff --git a/biblio/10581290.mdwn b/biblio/10581290.mdwn
new file mode 100644
index 0000000..7d1981b
--- /dev/null
+++ b/biblio/10581290.mdwn
@@ -0,0 +1,12 @@
+[[!meta title="Complete DNA sequence of the mitochondrial genome of the ascidian Halocynthia roretzi (Chordata, Urochordata)."]]
+[[!tag mitochondrion]]
+
+Genetics. 1999 Dec;153(4):1851-62
+
+Yokobori Si, Ueda T, Feldmaier-Fuchs G, Pääbo S, Ueshima R, Kondow A, Nishikawa K, Watanabe K.
+
+Complete DNA sequence of the mitochondrial genome of the ascidian Halocynthia roretzi (Chordata, Urochordata).
+
+The nucleotide sequence of Halocynthia mtDNA has been deposited in the DDBJ/GenBank/EMBL DNA databases under the accession no. AB024528
+
+[[!pmid 10581290 desc="Sequence of the Halocynthia roretzi mitochondrial genome.  Gene order strongly differs from vertebrates.  The predicted novel tRNAGly is found."]]

ptidéj
diff --git a/biblio/10352185.mdwn b/biblio/10352185.mdwn
new file mode 100644
index 0000000..4f445f3
--- /dev/null
+++ b/biblio/10352185.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="An extra tRNAGly(U*CU) found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine."]]
+[[!tag mitochondrion]]
+
+Nucleic Acids Res. 1999 Jun 15;27(12):2554-9 doi:10.1093/nar/27.12.2554
+
+Kondow A, Suzuki T, Yokobori S, Ueda T, Watanabe K.
+
+An extra tRNAGly(U<sup>*</sup>CU) found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine.
+
+[[!pmid 10352185 desc="Sequencing of the mt-tRNAGly of Halocynthia roretzi."]]

Dans l'avion
diff --git a/biblio/9520430.mdwn b/biblio/9520430.mdwn
new file mode 100644
index 0000000..117e569
--- /dev/null
+++ b/biblio/9520430.mdwn
@@ -0,0 +1,8 @@
+[[!meta title="Codon reassignment and amino acid composition in hemichordate mitochondria."]]
+[[!tag mitochondrion]]
+
+Jose Castresana, Gertraud Feldmaier-Fuchs, and Svante Pääbo
+
+Proc Natl Acad Sci U S A. 1998 Mar 31;95(7):3703-7 doi:10.1073/pnas.95.7.3703
+
+[[!pmid 9520430 desc="“In the mitochondrial genome of the hemichordate Balanoglossus carnosus, the codon AAA, which is assigned to lysine in most metazoans but to asparagine in echinoderms, is absent. Furthermore, the lysine tRNA gene carries an anticodon substitution that renders its gene product unable to decode AAA codons, whereas the asparagine tRNA gene has not changed to encode a tRNA with the ability to recognize AAA codons. Thus, the hemichordate mitochondrial genome can be regarded as an intermediate in the process of reassignment of mitochondrial AAA codons, where most metazoans represent the ancestral situation and the echinoderms the derived situation. This lends support to the codon capture hypothesis.”"]]

creating tag page tags/mitochodrion
diff --git a/tags/mitochodrion.mdwn b/tags/mitochodrion.mdwn
new file mode 100644
index 0000000..eb7b524
--- /dev/null
+++ b/tags/mitochodrion.mdwn
@@ -0,0 +1,4 @@
+[[!meta title="pages tagged mitochodrion"]]
+
+[[!inline pages="tagged(mitochodrion)" actions="no" archive="yes"
+feedshow=10]]

Café
diff --git a/biblio/8381878.mdwn b/biblio/8381878.mdwn
new file mode 100644
index 0000000..fe4a3d1
--- /dev/null
+++ b/biblio/8381878.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Codons AGA and AGG are read as glycine in ascidian mitochondria."]]
+[[!tag mitochodrion]]
+
+J Mol Evol. 1993 Jan;36(1):1-8. doi:10.1007/BF02407301
+
+Yokobori S, Ueda T, Watanabe K.
+
+Codons AGA and AGG are read as glycine in ascidian mitochondria.
+
+[[!pmid 8381878 desc="Analysis of Halocynthia roretzi cox1 cDNA sequence suggests a different genetic code for ascidian mitochodria."]]

Café
diff --git a/biblio/14738316.mdwn b/biblio/14738316.mdwn
new file mode 100644
index 0000000..1cb69f9
--- /dev/null
+++ b/biblio/14738316.mdwn
@@ -0,0 +1,16 @@
+[[!meta title="Mitochondrial genome of Ciona savignyi (Urochordata, Ascidiacea, Enterogona): comparison of gene arrangement and tRNA genes with Halocynthia roretzi mitochondrial genome."]]
+[[!tag Ciona mitochondrion]]
+
+J Mol Evol. 2003 Nov;57(5):574-87 doi: 10.1007/s00239-003-2511-9
+
+Yokobori S, Watanabe Y, Oshima T.
+
+Mitochondrial genome of Ciona savignyi (Urochordata, Ascidiacea, Enterogona): comparison of gene arrangement and tRNA genes with Halocynthia roretzi mitochondrial genome.
+
+The DDBJ accession number of complete nucleotide sequence of the Ciona mtDNA is AB079784.   
+
+[[!pmid 14738316 desc="“The atp8 gene is absent.” “The Ciona mt genome uses the
+same codon table as the Halocynthia mt genome: AUA specifies Met, UGA specifies
+Trp, and AGA/AGG specify Gly.” “To predict the genetic code used in the Ciona
+mt genome, the well-conserved cox1 sequence was compared between Ciona and
+several other metazoans.” “The Ciona mtDNA is extremely (77.3%) AT-rich.”"]]
diff --git a/tags/Ciona.mdwn b/tags/Ciona.mdwn
index 23058f7..3238950 100644
--- a/tags/Ciona.mdwn
+++ b/tags/Ciona.mdwn
@@ -39,4 +39,7 @@ Speciation is estimated to have happened during the Pliocene (≈ 3.8 Ma); a
 recent introgression then happened 15,000 years ago ([[Roux and coll.,
 2013|biblio/23564941]]).
 
+_Ciona savignyi_ uses the same mitochodrial genetic code as of other ascidians
+studied before ([[Yokobori, Watanabe and Oshima, 2003|biblio/14738316]]).
+
 [[!inline pages="tagged(Ciona)" actions="no" limit=0]]

Café
diff --git a/biblio/17764550.mdwn b/biblio/17764550.mdwn
new file mode 100644
index 0000000..dc66ade
--- /dev/null
+++ b/biblio/17764550.mdwn
@@ -0,0 +1,14 @@
+[[!meta title="The mitochondrial genome of Phallusia mammillata and Phallusia fumigata (Tunicata, Ascidiacea): high genome plasticity at intra-genus level."]]
+[[!tag mitochondrion]]
+
+Iannelli F, Griggio F, Pesole G, Gissi C.
+
+BMC Evol Biol. 2007 Aug 31;7:155 doi:10.1186/1471-2148-7-155
+
+The mitochondrial genome of Phallusia mammillata and Phallusia fumigata (Tunicata, Ascidiacea): high genome plasticity at intra-genus level.
+
+The complete mtDNA sequences of _P. mammillata_ and _P. fumigata_ were
+deposited at EMBL database under accession numbers AM292320 and AM292602,
+respectively.
+
+[[!pmid 17764550 desc="“Sequence similarities between NC of the same mtDNA have been found in P. fumigata.” “The cox2-cob is conserved in all tunicates, probably because of an ORF overlap.”"]]

Tag
diff --git a/biblio/17640763.mdwn b/biblio/17640763.mdwn
index 717b501..85dc97c 100644
--- a/biblio/17640763.mdwn
+++ b/biblio/17640763.mdwn
@@ -1,5 +1,5 @@
 [[!meta title="Mitogenomics reveals two cryptic species in Ciona intestinalis."]]
-[[!tag Ciona speciation]]
+[[!tag mitochondrion Ciona speciation]]
 
 Mitogenomics reveals two cryptic species in Ciona intestinalis.
 

commentaire
diff --git a/biblio/8915539.mdwn b/biblio/8915539.mdwn
index d0d005e..f6a88bc 100644
--- a/biblio/8915539.mdwn
+++ b/biblio/8915539.mdwn
@@ -1,5 +1,5 @@
 [[!meta title="Mechanisms of tRNA import into yeast mitochondria: an overview."]]
-[[!tag mitochondrion tRNA]]
+[[!tag mitochondrion tRNA yeast]]
 
 Tarassov IA and Martin RP.
 
@@ -7,4 +7,4 @@ Biochimie. 1996;78(6):502-10 doi:10.1016/0300-9084(96)84756-0
 
 Mechanisms of tRNA import into yeast mitochondria: an overview.
 
-[[!pmid 8915539 desc=""]]
+[[!pmid 8915539 desc="Yeast tRNA-K1 is expressed in the nuclear genome, aminoacylated by the cytoplasmic lysyl-tRNA-synthethase, and imported in the mitochondria using the mitochondrial lysyl-tRNA synthethase as a chaperone."]]

Café
diff --git a/biblio/8915539.mdwn b/biblio/8915539.mdwn
new file mode 100644
index 0000000..d0d005e
--- /dev/null
+++ b/biblio/8915539.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Mechanisms of tRNA import into yeast mitochondria: an overview."]]
+[[!tag mitochondrion tRNA]]
+
+Tarassov IA and Martin RP.
+
+Biochimie. 1996;78(6):502-10 doi:10.1016/0300-9084(96)84756-0
+
+Mechanisms of tRNA import into yeast mitochondria: an overview.
+
+[[!pmid 8915539 desc=""]]

Cafe
diff --git a/biblio/30111620.mdwn b/biblio/30111620.mdwn
new file mode 100644
index 0000000..b5ceeec
--- /dev/null
+++ b/biblio/30111620.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Genomic Structural Variations Within Five Continental Populations of Drosophila melanogaster."]]
+[[!tag variants Drosophila]]
+
+Long E, Evans C, Chaston J, Udall JA.
+
+G3 (Bethesda). 2018 Oct 3;8(10):3247-3253. doi:10.1534/g3.118.200631
+
+Genomic Structural Variations Within Five Continental Populations of Drosophila melanogaster.
+
+[[!pmid 30111620 desc="Compares breakpoint position with a +-3 bp tolerance.  Uses Assemblytics."]]

Café
diff --git a/biblio/18615017.mdwn b/biblio/18615017.mdwn
new file mode 100644
index 0000000..03256b3
--- /dev/null
+++ b/biblio/18615017.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="High-resolution mapping of meiotic crossovers and non-crossovers in yeast."]]
+[[!tag Yeast chromosome microarray genetics]]
+
+Mancera E, Bourgon R, Brozzi A, Huber W, Steinmetz LM.
+
+Nature. 2008 Jul 24;454(7203):479-85. doi:10.1038/nature07135
+
+High-resolution mapping of meiotic crossovers and non-crossovers in yeast.
+
+[[!pmid 18615017 desc="Spore tetrads genotypes on tiling arrays designed on their parental strains.  84% of hotspots overlap a promoter."]]

Café
diff --git a/biblio/10.1007_s13131-012-0243-7.mdwn b/biblio/10.1007_s13131-012-0243-7.mdwn
new file mode 100644
index 0000000..1becc90
--- /dev/null
+++ b/biblio/10.1007_s13131-012-0243-7.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Distribution patterns of appendicularians and copepods and their relationship on the northwest continental shelf of South China Sea during summer"]]
+[[!tag Oikopleura]]
+
+LI Kaizhi, YIN Jianqiang, HUANG Liangmin, LIAN Shumin and ZHANG Jianlin
+
+Acta Oceanol. Sin. (2012) 31: 135. https://doi.org/10.1007/s13131-012-0243-7 Oikopleura
+
+Distribution patterns of appendicularians and copepods and their relationship on the northwest continental shelf of South China Sea during summer
+
+[[!doi 10.1007/s13131-012-0243-7 desc="The most frequent appendicularians in northern south China sea were O. longicauda and O. rufescens, before O. dioica."]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 03b454e..09dad71 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -434,5 +434,8 @@ Ecology
    It was most abundant in summer ([[Franco and coll,.
    2016|biblio/10.6620_ZS.2016.55-28]], [[Franco and coll.,
    2017|biblio/10.1080_00222933.2017.1293180]]).
+ - In the northern south China sea, _O. longicauda_ and _O. rufescens_ were
+   reported to be more abundant than _O. dioica_ in 2006 by ([[Li and coll.,
+   2012|biblio/10.1007_s13131-012-0243-7.mdwn]]).
 
 [[!inline pages="tagged(Oikopleura)" actions="no" limit=0]]

Café en mai
diff --git a/biblio/31127102.mdwn b/biblio/31127102.mdwn
new file mode 100644
index 0000000..3a3b12c
--- /dev/null
+++ b/biblio/31127102.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment."]]
+[[!tag histone]]
+
+Zhou BR, Yadav KNS, Borgnia M, Hong J, Cao B, Olins AL, Olins DE, Bai Y, Zhang P.
+
+Nat Commun. 2019 May 24;10(1):2301. doi:10.1038/s41467-019-10247-4
+
+Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment.
+
+[[!pmid 31127102 desc="Development of a single-chain antibody to stabilise nucleosomes and make them easier to image with cryo-EM. Beautiful pictures of the centromeric nucleosome bound to centromeric DNA; structural insights explaining why linker histones have low affinity for centromeric chromatin."]]

More oiks in Taiwan
diff --git a/biblio/10.1007_s10750-011-0628-1.mdwn b/biblio/10.1007_s10750-011-0628-1.mdwn
new file mode 100644
index 0000000..1f74f8d
--- /dev/null
+++ b/biblio/10.1007_s10750-011-0628-1.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Zooplankton assemblages as indicators of seasonal changes in water masses in the boundary waters between the East China Sea and the Taiwan Strait"]]
+[[!tag Oikopleura]]
+
+Shih-Hui Hsiao, Samba Kâ Tien-Hsi Fang and Jiang-Shiou Hwang
+
+Hydrobiologia (2011) 666:317–330
+
+Zooplankton assemblages as indicators of seasonal changes in water masses in the boundary waters between the East China Sea and the Taiwan Strait
+
+[[!doi 10.1007/s10750-011-0628-1 desc="High abundance (>30%) of appendicularians in spring 2005 in the low-temperature, high-salinity surface waters of North-East coastal Taiwan stations.  (Temperatures were low in comparison with autumn, but high in comparison with the other stations in spring."]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 6e74461..03b454e 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -426,9 +426,10 @@ Ecology
    ([[Franco, Chen and Li, 2014|biblio/10.1007_s11802-014-2376-0]]).  Abundance peaked
    is spring, but the animals could also be found in winter when water temperature
    went below 10°C.
- - In Taiwan, _O. dioica_ was found jn 2009 in north east costal waters and
-   near the Kueishan island ([[Kâ and Hwang,
-   2011|biblio/zoolstud_50.2_155.mdwn]]).  In a coastal sampling sites visited in
+ - In Taiwan, _O. dioica_ was reported in north east costal waters in summar
+   2005 by [[Hsiao and coll.|biblio/10.1007/s10750-011-0628-1]] and in 2009
+   (plus near the Kueishan island) by [[Kâ and Hwang,
+   2011|biblio/zoolstud_50.2_155.mdwn]].  In a coastal sampling sites visited in
    2014, 2015, and 2017, it was almost always the most abundant appendicularian.
    It was most abundant in summer ([[Franco and coll,.
    2016|biblio/10.6620_ZS.2016.55-28]], [[Franco and coll.,

Oiko in Taiwan in 2009.
diff --git a/biblio/zoolstud_50.2_155.mdwn b/biblio/zoolstud_50.2_155.mdwn
new file mode 100644
index 0000000..cc65554
--- /dev/null
+++ b/biblio/zoolstud_50.2_155.mdwn
@@ -0,0 +1,14 @@
+[[!meta title="Mesozooplankton Distribution and Composition on the Northeastern Coast of Taiwan during Autumn: Effects of the Kuroshio Current and Hydrothermal Vents"]]
+[[!tag Oikopleura]]
+
+Samba Kâ and Jiang-Shiou Hwang
+
+Zoological Studies 50(2): 155-163 (2011)
+
+Mesozooplankton Distribution and Composition on the Northeastern Coast of Taiwan during Autumn: Effects of the Kuroshio Current and Hydrothermal Vents
+
+2 stations in coastal Northern Taiwan and 5 near Kueishan island and its
+vent(s) were sampled in Sept 2009.  In average, O. ruf > O. dio > O. lon but
+this varies by station.  Statio 7 (close to a vent) is a diversity hotspot.
+
+http://zoolstud. sinica. edu. tw/Journals/50.2/155. pdf
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 55beb85..6e74461 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -426,9 +426,12 @@ Ecology
    ([[Franco, Chen and Li, 2014|biblio/10.1007_s11802-014-2376-0]]).  Abundance peaked
    is spring, but the animals could also be found in winter when water temperature
    went below 10°C.
- - _O. dioica_ was found in coastal sampling sites distributed around Taiwan in 2014,
-   2015, and 2017, and was almost always the most abundant appendicularian.  It was
-   most abundant in summer ([[Franco and coll,. 2016|biblio/10.6620_ZS.2016.55-28]],
-   [[Franco and coll., 2017|biblio/10.1080_00222933.2017.1293180]]).
+ - In Taiwan, _O. dioica_ was found jn 2009 in north east costal waters and
+   near the Kueishan island ([[Kâ and Hwang,
+   2011|biblio/zoolstud_50.2_155.mdwn]]).  In a coastal sampling sites visited in
+   2014, 2015, and 2017, it was almost always the most abundant appendicularian.
+   It was most abundant in summer ([[Franco and coll,.
+   2016|biblio/10.6620_ZS.2016.55-28]], [[Franco and coll.,
+   2017|biblio/10.1080_00222933.2017.1293180]]).
 
 [[!inline pages="tagged(Oikopleura)" actions="no" limit=0]]

Café
diff --git a/biblio/10.1007_s11802-014-2376-0.mdwn b/biblio/10.1007_s11802-014-2376-0.mdwn
new file mode 100644
index 0000000..3abd037
--- /dev/null
+++ b/biblio/10.1007_s11802-014-2376-0.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Distribution and abundance of pelagic tunicates in the North Yellow Sea"]]
+[[!tag Oikopleura]]
+
+Franco, P., Chen, H. & Liu, G. J.
+
+J. Ocean Univ. China (2014) 13: 782. https://doi.org/10.1007/s11802-014-2376-0
+
+Distribution and abundance of pelagic tunicates in the North Yellow Sea
+
+[[!doi 10.1007/s11802-014-2376-0 desc="_O. dioica_ and _O. longicauda_ found throurought the 2006-2007 sampling year in the Yellow sea.  Abundance peaked in spring and was minimal in winter, where water temperature could be lower than 10 °C."]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index bb8a48a..55beb85 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -422,6 +422,10 @@ Ecology
  - While _O. dioica_ was not reported on the atlantic and pacific coasts of Costa Rica, its
    presence is considered plausible ([[Castellanos, Morales-Ramírez and Suárez-Morales,
    2009|biblio/10.1007_978-1-4020-8278-8_41]]).
+ - _O. dioica_ and _O. longicauda_ were found throurought 2006-2007 in the Yellow sea
+   ([[Franco, Chen and Li, 2014|biblio/10.1007_s11802-014-2376-0]]).  Abundance peaked
+   is spring, but the animals could also be found in winter when water temperature
+   went below 10°C.
  - _O. dioica_ was found in coastal sampling sites distributed around Taiwan in 2014,
    2015, and 2017, and was almost always the most abundant appendicularian.  It was
    most abundant in summer ([[Franco and coll,. 2016|biblio/10.6620_ZS.2016.55-28]],

Attempt to update
diff --git a/index.en.po b/index.en.po
index ea1162b..d05a2ec 100644
--- a/index.en.po
+++ b/index.en.po
@@ -74,7 +74,7 @@ msgstr ""
 "[RIKEN]:  http://www.riken.jp/\n"
 "[zfin]:   http://zfin.org/ZDB-PERS-010827-9\n"
 "[gfp]:    http://photo.charles.plessy.org/picture_gallery\n"
-"[résultats en anglais]:   http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c\n"
+"[results]:   http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c\n"
 
 #. type: Plain text
 #, no-wrap

Attempt to update
diff --git a/index.en.po b/index.en.po
index 0e3594b..ea1162b 100644
--- a/index.en.po
+++ b/index.en.po
@@ -3,7 +3,7 @@ msgid ""
 msgstr ""
 "Project-Id-Version: \n"
 "POT-Creation-Date: 2019-06-04 02:05+0000\n"
-"PO-Revision-Date: 2019-06-04 11:10+0900\n"
+"PO-Revision-Date: 2019-06-04 11:11+0900\n"
 "Last-Translator: Charles Plessy <>\n"
 "Language-Team: Hopla\n"
 "Language: en\n"
@@ -56,8 +56,8 @@ msgstr ""
 "Before that I was working at [RIKEN][] for 14 years, to develop technologies "
 "to measure the activity of cells by sequencing their messenger RNAs.  I "
 "publish my [results][] in scientific journals.  Before moving to Japan, I "
-"studied [zebrafish][] in Illkirch.  I still have a some pictures of my "
-"[transgenic fish][] on this website."
+"studied [zebrafish][zfin] in Illkirch.  I still have a some pictures of my "
+"[transgenic fish][gfp] on this website."
 
 #. type: Plain text
 #, no-wrap

Attempt to update
diff --git a/index.en.po b/index.en.po
index d780717..0e3594b 100644
--- a/index.en.po
+++ b/index.en.po
@@ -3,7 +3,7 @@ msgid ""
 msgstr ""
 "Project-Id-Version: \n"
 "POT-Creation-Date: 2019-06-04 02:05+0000\n"
-"PO-Revision-Date: 2019-06-04 11:02+0900\n"
+"PO-Revision-Date: 2019-06-04 11:10+0900\n"
 "Last-Translator: Charles Plessy <>\n"
 "Language-Team: Hopla\n"
 "Language: en\n"
@@ -60,14 +60,7 @@ msgstr ""
 "[transgenic fish][] on this website."
 
 #. type: Plain text
-#, fuzzy, no-wrap
-#| msgid ""
-#| "[OIST]:   https://www.oist.jp/\n"
-#| "[Oikopleura dioica]:      https://en.wikipedia.org/wiki/Oikopleura_dioica\n"
-#| "[RIKEN]:  http://population-transcriptomics.org/\n"
-#| "[zfin]:   http://zfin.org/ZDB-PERS-010827-9\n"
-#| "[gfp]:    http://photo.charles.plessy.org/picture_gallery\n"
-#| "[résultats en anglais]:   http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c\n"
+#, no-wrap
 msgid ""
 "[OIST]:   https://www.oist.jp/\n"
 "[Oikopleura dioica]:      https://en.wikipedia.org/wiki/Oikopleura_dioica\n"
@@ -78,26 +71,13 @@ msgid ""
 msgstr ""
 "[OIST]:   https://www.oist.jp/\n"
 "[Oikopleura dioica]:      https://en.wikipedia.org/wiki/Oikopleura_dioica\n"
-"[RIKEN]:  http://population-transcriptomics.org/\n"
+"[RIKEN]:  http://www.riken.jp/\n"
 "[zfin]:   http://zfin.org/ZDB-PERS-010827-9\n"
 "[gfp]:    http://photo.charles.plessy.org/picture_gallery\n"
 "[résultats en anglais]:   http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c\n"
 
 #. type: Plain text
-#, fuzzy, no-wrap
-#| msgid ""
-#| "Mes pages dans des annuaires ou des réseaux : [viadeo][], [linkedin][],\n"
-#| "[l'annuaire de Sciencescope][annuaire], l'association des chercheurs et\n"
-#| "étudiants francophones au Japon, et enfin [copains d'avant][copainsdavant].  J'ai\n"
-#| "[[signé ici|réseauxsociaux.txt]] les URLs ci-dessus avec la [[!wikipediafr signature_numérique desc=\"clef électronique\"]] que j'utilise chez Debian. <form method=\"get\"\n"
-#| "action=\"http://pgp.cs.uu.nl/mk_path.cgi?\"\n"
-#| "id=\"clef\">Si vous avez aussi une clef pour signer des documents électroniques, vous\n"
-#| "pouvez vérifier si elle est connectée à <a\n"
-#| "href=\"https://sks-keyservers.net/pks/lookup?op=vindex&search=0xC5BD6C8F2295D502\"\n"
-#| "title=\"Ma clef GPG\">ma clef</a> en entrant son identifiant\n"
-#| "ici&nbsp;:&nbsp;<input name=\"FROM\" size=\"10\" type=\"text\"><input name=\"TO\"\n"
-#| "value=\"2295D502\" type=\"hidden\"><input name=\"PATHS\" value=\"Rechercher un chaîne\n"
-#| "de confiance.\" type=\"submit\"></form>\n"
+#, no-wrap
 msgid ""
 "Mes pages (plus ou moins à jour) dans des annuaires ou des réseaux :\n"
 "[viadeo][], [linkedin][], ou [copains d'avant][copainsdavant].  J'ai\n"
@@ -110,7 +90,7 @@ msgid ""
 "ici&nbsp;:&nbsp;<input name=\"FROM\" size=\"10\" type=\"text\"><input name=\"TO\"\n"
 "value=\"2295D502\" type=\"hidden\"><input name=\"PATHS\" value=\"Rechercher un chaîne\n"
 "de confiance.\" type=\"submit\"></form>\n"
-msgstr "My pages in social networks: [viadeo][], [linkedin][], [Sciencescope][], the association of the French-speaking researchers in Japan, and [copains d'avant][].  I [[signed here|réseauxsociaux.txt]] these URLs with the [[!wikipedia Digital_signature desc=\"electronic key\"]] that I use at Debian.<form method=\"get\" action=\"http://pgp.cs.uu.nl/mk_path.cgi?\" id=\"clef\">If you have a key for signing electronic documents, you can check if it is connected to <a href=\"http://pgpkeys.mit.edu:11371/pks/lookup?op=vindex&search=0xC5BD6C8F2295D502\" title=\"Ma clef GPG\">my key</a> by entering its ID here:<input name=\"FROM\" size=\"10\" type=\"text\"><input name=\"TO\" value=\"2295D502\" type=\"hidden\"><input name=\"PATHS\" value=\"Search for a chain of trust.\" type=\"submit\"></form>\n"
+msgstr "My (more or less up to date) pages in social networks: [viadeo][], [linkedin][], or [copains d'avant][].  I [[signed here|réseauxsociaux.txt]] these URLs with the [[!wikipedia Digital_signature desc=\"electronic key\"]] that I use at Debian.<form method=\"get\" action=\"http://pgp.cs.uu.nl/mk_path.cgi?\" id=\"clef\">If you have a key for signing electronic documents, you can check if it is connected to <a href=\"http://pgpkeys.mit.edu:11371/pks/lookup?op=vindex&search=0xC5BD6C8F2295D502\" title=\"Ma clef GPG\">my key</a> by entering its ID here:<input name=\"FROM\" size=\"10\" type=\"text\"><input name=\"TO\" value=\"2295D502\" type=\"hidden\"><input name=\"PATHS\" value=\"Search for a chain of trust.\" type=\"submit\"></form>\n"
 
 #. type: Plain text
 #, no-wrap

espace
diff --git a/index.mdwn b/index.mdwn
index e568758..1ec3a23 100644
--- a/index.mdwn
+++ b/index.mdwn
@@ -20,6 +20,7 @@ messagers.  Je publie mes [résultats en anglais][].  Avant de déménager au
 Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore quelques
 images de mes [poissons transgéniques][gfp] sur ce site.
 
+
 [OIST]:   https://www.oist.jp/
 [Oikopleura dioica]:      https://en.wikipedia.org/wiki/Oikopleura_dioica
 [RIKEN]:  http://www.riken.jp/

updated PO files
diff --git a/index.en.po b/index.en.po
index 89cc98c..d780717 100644
--- a/index.en.po
+++ b/index.en.po
@@ -2,7 +2,7 @@
 msgid ""
 msgstr ""
 "Project-Id-Version: \n"
-"POT-Creation-Date: 2019-06-04 01:55+0000\n"
+"POT-Creation-Date: 2019-06-04 02:05+0000\n"
 "PO-Revision-Date: 2019-06-04 11:02+0900\n"
 "Last-Translator: Charles Plessy <>\n"
 "Language-Team: Hopla\n"
@@ -20,32 +20,58 @@ msgstr "[[!meta stylesheet=\"accueil\" rel=\"stylesheet\" title=\"Home page\"]]\
 
 #. type: Plain text
 msgid ""
-"Voici quelques [photos][] (Antarctique, Japon, montagne, divers, …) que j'ai numérisé.  Ma [[page japon|Japon]] (qui ne se remplit plus vraiment), avec la traduction du vocabulaire de certains manuels de japonais. Enfin, quelques nouvelles de moi avec le [[kanji du moment|Japon/kanji]], et des nouvelles de mes [[contributions|"
-"Debian/planète]] en tant que [développeur Debian][]."
+"Voici quelques [photos][] (Antarctique, Japon, montagne, divers, …) que j'ai "
+"numérisé.  Ma [[page japon|Japon]] (qui ne se remplit plus vraiment), avec "
+"la traduction du vocabulaire de certains manuels de japonais. Enfin, "
+"quelques nouvelles de moi avec le [[kanji du moment|Japon/kanji]], et des "
+"nouvelles de mes [[contributions|Debian/planète]] en tant que [développeur "
+"Debian][]."
 msgstr ""
-"Here are some [pictures][photos] (Antarctica, Japan, mountain, others, …) that I scanned.  My [[Japan page|Japon]] (rarely updated), with the translation of the vocabulary for some Japanese language textbooks.  Lastly, some personal news with the [[kanji of the day|Japon/kanji]], news of my [[contributions|Debian/planet]] as "
-"[Debian developer][développeur Debian]."
+"Here are some [pictures][photos] (Antarctica, Japan, mountain, others, …) "
+"that I scanned.  My [[Japan page|Japon]] (rarely updated), with the "
+"translation of the vocabulary for some Japanese language textbooks.  Lastly, "
+"some personal news with the [[kanji of the day|Japon/kanji]], news of my "
+"[[contributions|Debian/planet]] as [Debian developer][développeur Debian]."
 
 #. type: Plain text
-msgid "[photos]:\t\thttp://photo.charles.plessy.org/ [développeur Debian]:\thttp://qa.debian.org/developer.php?login=plessy"
+msgid ""
+"[photos]:\t\thttp://photo.charles.plessy.org/ [développeur Debian]:\thttp://"
+"qa.debian.org/developer.php?login=plessy"
 msgstr ""
 "[photos]:\t\thttp://photo.charles.plessy.org/\n"
 "[développeur Debian]:\thttp://qa.debian.org/developer.php?login=plessy"
 
 #. type: Plain text
 msgid ""
-"Je travaille à [OIST][] depuis août 2018, et j'y étudie la séquence des chromosomes d'un petit animal planctonique appellé _[Oikopleura dioica][]_.  Auparavant, j'ai travaillé au [RIKEN][] pendant 14 ans, pour y développer des technologies pour mesurer l'activité des cellules en séquençant leurs ARN messagers.  Je publie mes "
-"[résultats en anglais][].  Avant de déménager au Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore quelques images de mes [poissons transgéniques][gfp] sur ce site."
+"Je travaille à [OIST][] depuis août 2018, et j'y étudie la séquence des "
+"chromosomes d'un petit animal planctonique appellé _[Oikopleura dioica][]_.  "
+"Auparavant, j'ai travaillé au [RIKEN][] pendant 14 ans, pour y développer "
+"des technologies pour mesurer l'activité des cellules en séquençant leurs "
+"ARN messagers.  Je publie mes [résultats en anglais][].  Avant de déménager "
+"au Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore "
+"quelques images de mes [poissons transgéniques][gfp] sur ce site."
 msgstr ""
-"I am working at [OIST] since August 2018, where I study the sequence of the chromosomes of a small planktonic animal called _[Oikopleura dioica][]_. Before that I was working at [RIKEN][] for 14 years, to develop technologies to measure the activity of cells by sequencing their messenger RNAs.  I publish my [results][] in "
-"scientific journals.  Before moving to Japan, I studied [zebrafish][] in Illkirch.  I still have a some pictures of my [transgenic fish][] on this website."
+"I am working at [OIST] since August 2018, where I study the sequence of the "
+"chromosomes of a small planktonic animal called _[Oikopleura dioica][]_. "
+"Before that I was working at [RIKEN][] for 14 years, to develop technologies "
+"to measure the activity of cells by sequencing their messenger RNAs.  I "
+"publish my [results][] in scientific journals.  Before moving to Japan, I "
+"studied [zebrafish][] in Illkirch.  I still have a some pictures of my "
+"[transgenic fish][] on this website."
 
 #. type: Plain text
-#, no-wrap
+#, fuzzy, no-wrap
+#| msgid ""
+#| "[OIST]:   https://www.oist.jp/\n"
+#| "[Oikopleura dioica]:      https://en.wikipedia.org/wiki/Oikopleura_dioica\n"
+#| "[RIKEN]:  http://population-transcriptomics.org/\n"
+#| "[zfin]:   http://zfin.org/ZDB-PERS-010827-9\n"
+#| "[gfp]:    http://photo.charles.plessy.org/picture_gallery\n"
+#| "[résultats en anglais]:   http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c\n"
 msgid ""
 "[OIST]:   https://www.oist.jp/\n"
 "[Oikopleura dioica]:      https://en.wikipedia.org/wiki/Oikopleura_dioica\n"
-"[RIKEN]:  http://population-transcriptomics.org/\n"
+"[RIKEN]:  http://www.riken.jp/\n"
 "[zfin]:   http://zfin.org/ZDB-PERS-010827-9\n"
 "[gfp]:    http://photo.charles.plessy.org/picture_gallery\n"
 "[résultats en anglais]:   http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c\n"
@@ -58,11 +84,23 @@ msgstr ""
 "[résultats en anglais]:   http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c\n"
 
 #. type: Plain text
-#, no-wrap
+#, fuzzy, no-wrap
+#| msgid ""
+#| "Mes pages dans des annuaires ou des réseaux : [viadeo][], [linkedin][],\n"
+#| "[l'annuaire de Sciencescope][annuaire], l'association des chercheurs et\n"
+#| "étudiants francophones au Japon, et enfin [copains d'avant][copainsdavant].  J'ai\n"
+#| "[[signé ici|réseauxsociaux.txt]] les URLs ci-dessus avec la [[!wikipediafr signature_numérique desc=\"clef électronique\"]] que j'utilise chez Debian. <form method=\"get\"\n"
+#| "action=\"http://pgp.cs.uu.nl/mk_path.cgi?\"\n"
+#| "id=\"clef\">Si vous avez aussi une clef pour signer des documents électroniques, vous\n"
+#| "pouvez vérifier si elle est connectée à <a\n"
+#| "href=\"https://sks-keyservers.net/pks/lookup?op=vindex&search=0xC5BD6C8F2295D502\"\n"
+#| "title=\"Ma clef GPG\">ma clef</a> en entrant son identifiant\n"
+#| "ici&nbsp;:&nbsp;<input name=\"FROM\" size=\"10\" type=\"text\"><input name=\"TO\"\n"
+#| "value=\"2295D502\" type=\"hidden\"><input name=\"PATHS\" value=\"Rechercher un chaîne\n"
+#| "de confiance.\" type=\"submit\"></form>\n"
 msgid ""
-"Mes pages dans des annuaires ou des réseaux : [viadeo][], [linkedin][],\n"
-"[l'annuaire de Sciencescope][annuaire], l'association des chercheurs et\n"
-"étudiants francophones au Japon, et enfin [copains d'avant][copainsdavant].  J'ai\n"
+"Mes pages (plus ou moins à jour) dans des annuaires ou des réseaux :\n"
+"[viadeo][], [linkedin][], ou [copains d'avant][copainsdavant].  J'ai\n"
 "[[signé ici|réseauxsociaux.txt]] les URLs ci-dessus avec la [[!wikipediafr signature_numérique desc=\"clef électronique\"]] que j'utilise chez Debian. <form method=\"get\"\n"
 "action=\"http://pgp.cs.uu.nl/mk_path.cgi?\"\n"
 "id=\"clef\">Si vous avez aussi une clef pour signer des documents électroniques, vous\n"

maj
diff --git a/index.mdwn b/index.mdwn
index 67057d1..e568758 100644
--- a/index.mdwn
+++ b/index.mdwn
@@ -22,15 +22,14 @@ images de mes [poissons transgéniques][gfp] sur ce site.
 
 [OIST]:   https://www.oist.jp/
 [Oikopleura dioica]:      https://en.wikipedia.org/wiki/Oikopleura_dioica
-[RIKEN]:  http://population-transcriptomics.org/
+[RIKEN]:  http://www.riken.jp/
 [zfin]:   http://zfin.org/ZDB-PERS-010827-9
 [gfp]:    http://photo.charles.plessy.org/picture_gallery
 [résultats en anglais]:   http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c
 
 
-Mes pages dans des annuaires ou des réseaux : [viadeo][], [linkedin][],
-[l'annuaire de Sciencescope][annuaire], l'association des chercheurs et
-étudiants francophones au Japon, et enfin [copains d'avant][copainsdavant].  J'ai
+Mes pages (plus ou moins à jour) dans des annuaires ou des réseaux :
+[viadeo][], [linkedin][], ou [copains d'avant][copainsdavant].  J'ai
 [[signé ici|réseauxsociaux.txt]] les URLs ci-dessus avec la [[!wikipediafr signature_numérique desc="clef électronique"]] que j'utilise chez Debian. <form method="get"
 action="http://pgp.cs.uu.nl/mk_path.cgi?"
 id="clef">Si vous avez aussi une clef pour signer des documents électroniques, vous

Attempt to update
diff --git a/index.en.po b/index.en.po
index 869cd83..89cc98c 100644
--- a/index.en.po
+++ b/index.en.po
@@ -3,7 +3,7 @@ msgid ""
 msgstr ""
 "Project-Id-Version: \n"
 "POT-Creation-Date: 2019-06-04 01:55+0000\n"
-"PO-Revision-Date: 2019-06-04 10:59+0900\n"
+"PO-Revision-Date: 2019-06-04 11:02+0900\n"
 "Last-Translator: Charles Plessy <>\n"
 "Language-Team: Hopla\n"
 "Language: en\n"
@@ -33,16 +33,12 @@ msgstr ""
 "[développeur Debian]:\thttp://qa.debian.org/developer.php?login=plessy"
 
 #. type: Plain text
-#, fuzzy
-#| msgid ""
-#| "Je travaille au [RIKEN][] depuis quelques années, et j'y développe des technologies pour mesurer l'activité des cellules en séquençant leurs ARN messagers.  Je publie mes [résultats en anglais][].  Avant de déménager au Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore quelques images de mes [poissons "
-#| "transgéniques][gfp] sur ce site."
 msgid ""
 "Je travaille à [OIST][] depuis août 2018, et j'y étudie la séquence des chromosomes d'un petit animal planctonique appellé _[Oikopleura dioica][]_.  Auparavant, j'ai travaillé au [RIKEN][] pendant 14 ans, pour y développer des technologies pour mesurer l'activité des cellules en séquençant leurs ARN messagers.  Je publie mes "
 "[résultats en anglais][].  Avant de déménager au Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore quelques images de mes [poissons transgéniques][gfp] sur ce site."
 msgstr ""
-"I am working at [RIKEN](http://population-transcriptomics.org/ \"RIKEN CLST's Genomics Miniaturisation Technology Unit\") since some years, and there I develop technologies to measure the activity of cells by sequencing their messenger RNAs.  I publish my [results](http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c) in scientific "
-"journals.  Before moving to Japan, I studied [zebrafish](http://zfin.org/ZDB-PERS-010827-9) in Illkirch.  I still have a some pictures of my [transgenic fish](http://photo.charles.plessy.org/picture_gallery) on this website."
+"I am working at [OIST] since August 2018, where I study the sequence of the chromosomes of a small planktonic animal called _[Oikopleura dioica][]_. Before that I was working at [RIKEN][] for 14 years, to develop technologies to measure the activity of cells by sequencing their messenger RNAs.  I publish my [results][] in "
+"scientific journals.  Before moving to Japan, I studied [zebrafish][] in Illkirch.  I still have a some pictures of my [transgenic fish][] on this website."
 
 #. type: Plain text
 #, no-wrap
@@ -88,8 +84,8 @@ msgid ""
 msgstr ""
 "[viadeo]:     http://www.viadeo.com/fr/profile/charles.plessy\n"
 "[linkedin]:   http://jp.linkedin.com/in/charlesplessy\n"
-"[annuaire]:   http://annuaire.sciencescope.org/\n"
-"[copainsdavant]:   http://copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/\n"
+"[Sciencescope]:   http://annuaire.sciencescope.org/\n"
+"[copains d'avant]:   http://copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/\n"
 
 #. type: Plain text
 #, no-wrap

Attempt to update
diff --git a/index.en.po b/index.en.po
index 914579c..869cd83 100644
--- a/index.en.po
+++ b/index.en.po
@@ -3,7 +3,7 @@ msgid ""
 msgstr ""
 "Project-Id-Version: \n"
 "POT-Creation-Date: 2019-06-04 01:55+0000\n"
-"PO-Revision-Date: 2013-09-29 10:45+0900\n"
+"PO-Revision-Date: 2019-06-04 10:59+0900\n"
 "Last-Translator: Charles Plessy <>\n"
 "Language-Team: Hopla\n"
 "Language: en\n"
@@ -11,7 +11,7 @@ msgstr ""
 "Content-Type: text/plain; charset=UTF-8\n"
 "Content-Transfer-Encoding: 8bit\n"
 "Plural-Forms: nplurals=2; plural=(n != 1);\n"
-"X-Generator: Poedit 1.5.4\n"
+"X-Generator: Poedit 1.8.11\n"
 
 #. type: Plain text
 #, no-wrap
@@ -20,23 +20,14 @@ msgstr "[[!meta stylesheet=\"accueil\" rel=\"stylesheet\" title=\"Home page\"]]\
 
 #. type: Plain text
 msgid ""
-"Voici quelques [photos][] (Antarctique, Japon, montagne, divers, …) que j'ai "
-"numérisé.  Ma [[page japon|Japon]] (qui ne se remplit plus vraiment), avec "
-"la traduction du vocabulaire de certains manuels de japonais. Enfin, "
-"quelques nouvelles de moi avec le [[kanji du moment|Japon/kanji]], et des "
-"nouvelles de mes [[contributions|Debian/planète]] en tant que [développeur "
-"Debian][]."
+"Voici quelques [photos][] (Antarctique, Japon, montagne, divers, …) que j'ai numérisé.  Ma [[page japon|Japon]] (qui ne se remplit plus vraiment), avec la traduction du vocabulaire de certains manuels de japonais. Enfin, quelques nouvelles de moi avec le [[kanji du moment|Japon/kanji]], et des nouvelles de mes [[contributions|"
+"Debian/planète]] en tant que [développeur Debian][]."
 msgstr ""
-"Here are some [pictures][photos] (Antarctica, Japan, mountain, others, …) "
-"that I scanned.  My [[Japan page|Japon]] (rarely updated), with the "
-"translation of the vocabulary for some Japanese language textbooks.  Lastly, "
-"some personal news with the [[kanji of the day|Japon/kanji]], news of my "
-"[[contributions|Debian/planet]] as [Debian developer][développeur Debian]."
+"Here are some [pictures][photos] (Antarctica, Japan, mountain, others, …) that I scanned.  My [[Japan page|Japon]] (rarely updated), with the translation of the vocabulary for some Japanese language textbooks.  Lastly, some personal news with the [[kanji of the day|Japon/kanji]], news of my [[contributions|Debian/planet]] as "
+"[Debian developer][développeur Debian]."
 
 #. type: Plain text
-msgid ""
-"[photos]:\t\thttp://photo.charles.plessy.org/ [développeur Debian]:\thttp://"
-"qa.debian.org/developer.php?login=plessy"
+msgid "[photos]:\t\thttp://photo.charles.plessy.org/ [développeur Debian]:\thttp://qa.debian.org/developer.php?login=plessy"
 msgstr ""
 "[photos]:\t\thttp://photo.charles.plessy.org/\n"
 "[développeur Debian]:\thttp://qa.debian.org/developer.php?login=plessy"
@@ -44,32 +35,17 @@ msgstr ""
 #. type: Plain text
 #, fuzzy
 #| msgid ""
-#| "Je travaille au [RIKEN][] depuis quelques années, et j'y développe des "
-#| "technologies pour mesurer l'activité des cellules en séquençant leurs ARN "
-#| "messagers.  Je publie mes [résultats en anglais][].  Avant de déménager "
-#| "au Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore "
-#| "quelques images de mes [poissons transgéniques][gfp] sur ce site."
+#| "Je travaille au [RIKEN][] depuis quelques années, et j'y développe des technologies pour mesurer l'activité des cellules en séquençant leurs ARN messagers.  Je publie mes [résultats en anglais][].  Avant de déménager au Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore quelques images de mes [poissons "
+#| "transgéniques][gfp] sur ce site."
 msgid ""
-"Je travaille à [OIST][] depuis août 2018, et j'y étudie la séquence des "
-"chromosomes d'un petit animal planctonique appellé _[Oikopleura dioica][]_.  "
-"Auparavant, j'ai travaillé au [RIKEN][] pendant 14 ans, pour y développer "
-"des technologies pour mesurer l'activité des cellules en séquençant leurs "
-"ARN messagers.  Je publie mes [résultats en anglais][].  Avant de déménager "
-"au Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore "
-"quelques images de mes [poissons transgéniques][gfp] sur ce site."
+"Je travaille à [OIST][] depuis août 2018, et j'y étudie la séquence des chromosomes d'un petit animal planctonique appellé _[Oikopleura dioica][]_.  Auparavant, j'ai travaillé au [RIKEN][] pendant 14 ans, pour y développer des technologies pour mesurer l'activité des cellules en séquençant leurs ARN messagers.  Je publie mes "
+"[résultats en anglais][].  Avant de déménager au Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore quelques images de mes [poissons transgéniques][gfp] sur ce site."
 msgstr ""
-"I am working at [RIKEN](http://population-transcriptomics.org/ \"RIKEN "
-"CLST's Genomics Miniaturisation Technology Unit\") since some years, and "
-"there I develop technologies to measure the activity of cells by sequencing "
-"their messenger RNAs.  I publish my [results](http://www.ncbi.nlm.nih.gov/"
-"pubmed?term=plessy%20c) in scientific journals.  Before moving to Japan, I "
-"studied [zebrafish](http://zfin.org/ZDB-PERS-010827-9) in Illkirch.  I still "
-"have a some pictures of my [transgenic fish](http://photo.charles.plessy.org/"
-"picture_gallery) on this website."
+"I am working at [RIKEN](http://population-transcriptomics.org/ \"RIKEN CLST's Genomics Miniaturisation Technology Unit\") since some years, and there I develop technologies to measure the activity of cells by sequencing their messenger RNAs.  I publish my [results](http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c) in scientific "
+"journals.  Before moving to Japan, I studied [zebrafish](http://zfin.org/ZDB-PERS-010827-9) in Illkirch.  I still have a some pictures of my [transgenic fish](http://photo.charles.plessy.org/picture_gallery) on this website."
 
 #. type: Plain text
-#, fuzzy, no-wrap
-#| msgid "[RIKEN]: http://population-transcriptomics.org/ \"RIKEN CLST's Genomics Miniaturisation Technology Unit\" [zfin]: http://zfin.org/ZDB-PERS-010827-9 [gfp]: http://photo.charles.plessy.org/picture_gallery \"Gros plans sur des poissons transgéniques\" [résultats en anglais]: http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c"
+#, no-wrap
 msgid ""
 "[OIST]:   https://www.oist.jp/\n"
 "[Oikopleura dioica]:      https://en.wikipedia.org/wiki/Oikopleura_dioica\n"
@@ -77,23 +53,16 @@ msgid ""
 "[zfin]:   http://zfin.org/ZDB-PERS-010827-9\n"
 "[gfp]:    http://photo.charles.plessy.org/picture_gallery\n"
 "[résultats en anglais]:   http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c\n"
-msgstr "<!-- Liens Markdown intégrés au paragraphe précédent. -->"
+msgstr ""
+"[OIST]:   https://www.oist.jp/\n"
+"[Oikopleura dioica]:      https://en.wikipedia.org/wiki/Oikopleura_dioica\n"
+"[RIKEN]:  http://population-transcriptomics.org/\n"
+"[zfin]:   http://zfin.org/ZDB-PERS-010827-9\n"
+"[gfp]:    http://photo.charles.plessy.org/picture_gallery\n"
+"[résultats en anglais]:   http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c\n"
 
 #. type: Plain text
-#, fuzzy, no-wrap
-#| msgid ""
-#| "Mes pages dans des annuaires ou des réseaux : [viadeo][], [linkedin][],\n"
-#| "[l'annuaire de Sciencescope][annuaire], l'association des chercheurs et\n"
-#| "étudiants francophones au Japon, et enfin [copains d'avant][copainsdavant].  J'ai\n"
-#| "[[signé ici|réseauxsociaux.txt]] les URLs ci-dessus avec la [[!wikipediafr signature_numérique desc=\"clef électronique\"]] que j'utilise chez Debian. <form method=\"get\"\n"
-#| "action=\"http://pgp.cs.uu.nl/mk_path.cgi?\"\n"
-#| "id=\"clef\">Si vous avez aussi une clef pour signer des documents électroniques, vous\n"
-#| "pouvez vérifier si elle est connectée à <a\n"
-#| "href=\"http://pgpkeys.mit.edu:11371/pks/lookup?op=vindex&search=0xC5BD6C8F2295D502\"\n"
-#| "title=\"Ma clef GPG\">ma clef</a> en entrant son identifiant\n"
-#| "ici&nbsp;:&nbsp;<input name=\"FROM\" size=\"10\" type=\"text\"><input name=\"TO\"\n"
-#| "value=\"2295D502\" type=\"hidden\"><input name=\"PATHS\" value=\"Rechercher un chaîne\n"
-#| "de confiance.\" type=\"submit\"></form>\n"
+#, no-wrap
 msgid ""
 "Mes pages dans des annuaires ou des réseaux : [viadeo][], [linkedin][],\n"
 "[l'annuaire de Sciencescope][annuaire], l'association des chercheurs et\n"
@@ -107,17 +76,20 @@ msgid ""
 "ici&nbsp;:&nbsp;<input name=\"FROM\" size=\"10\" type=\"text\"><input name=\"TO\"\n"
 "value=\"2295D502\" type=\"hidden\"><input name=\"PATHS\" value=\"Rechercher un chaîne\n"
 "de confiance.\" type=\"submit\"></form>\n"
-msgstr "My pages in social networks: [viadeo]( http://www.viadeo.com/fr/profile/charles.plessy), [linkedin]( http://www.viadeo.com/fr/profile/charles.plessy), [Sciencescope](http://annuaire.sciencescope.org/), the association of the French-speaking researchers in Japan, and [copains d'avant](http://copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/).  I [[signed here|réseauxsociaux.txt]] these URLs with the [[!wikipedia Digital_signature desc=\"electronic key\"]] that I use at Debian.<form method=\"get\" action=\"http://pgp.cs.uu.nl/mk_path.cgi?\" id=\"clef\">If you have a key for signing electronic documents, you can check if it is connected to <a href=\"http://pgpkeys.mit.edu:11371/pks/lookup?op=vindex&search=0xC5BD6C8F2295D502\" title=\"Ma clef GPG\">my key</a> by entering its ID here:<input name=\"FROM\" size=\"10\" type=\"text\"><input name=\"TO\" value=\"2295D502\" type=\"hidden\"><input name=\"PATHS\" value=\"Search for a chain of trust.\" type=\"submit\"></form>\n"
+msgstr "My pages in social networks: [viadeo][], [linkedin][], [Sciencescope][], the association of the French-speaking researchers in Japan, and [copains d'avant][].  I [[signed here|réseauxsociaux.txt]] these URLs with the [[!wikipedia Digital_signature desc=\"electronic key\"]] that I use at Debian.<form method=\"get\" action=\"http://pgp.cs.uu.nl/mk_path.cgi?\" id=\"clef\">If you have a key for signing electronic documents, you can check if it is connected to <a href=\"http://pgpkeys.mit.edu:11371/pks/lookup?op=vindex&search=0xC5BD6C8F2295D502\" title=\"Ma clef GPG\">my key</a> by entering its ID here:<input name=\"FROM\" size=\"10\" type=\"text\"><input name=\"TO\" value=\"2295D502\" type=\"hidden\"><input name=\"PATHS\" value=\"Search for a chain of trust.\" type=\"submit\"></form>\n"
 
 #. type: Plain text
-#, fuzzy, no-wrap
-#| msgid "[viadeo]: http://www.viadeo.com/fr/profile/charles.plessy [linkedin]: http://jp.linkedin.com/in/charlesplessy \"Ma page sur LinkedIn\" [annuaire]: http://annuaire.sciencescope.org/ [copainsdavant]: http://copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/"
+#, no-wrap
 msgid ""
 "[viadeo]:     http://www.viadeo.com/fr/profile/charles.plessy\n"
 "[linkedin]:   http://jp.linkedin.com/in/charlesplessy\n"
 "[annuaire]:   http://annuaire.sciencescope.org/\n"
 "[copainsdavant]:   http://copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/\n"
-msgstr "<!-- Liens Markdown intégrés au paragraphe précédent. -->"
+msgstr ""
+"[viadeo]:     http://www.viadeo.com/fr/profile/charles.plessy\n"
+"[linkedin]:   http://jp.linkedin.com/in/charlesplessy\n"
+"[annuaire]:   http://annuaire.sciencescope.org/\n"
+"[copainsdavant]:   http://copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/\n"
 
 #. type: Plain text
 #, no-wrap

updated PO files
diff --git a/index.en.po b/index.en.po
index b24a170..914579c 100644
--- a/index.en.po
+++ b/index.en.po
@@ -2,7 +2,7 @@
 msgid ""
 msgstr ""
 "Project-Id-Version: \n"
-"POT-Creation-Date: 2019-06-04 01:48+0000\n"
+"POT-Creation-Date: 2019-06-04 01:55+0000\n"
 "PO-Revision-Date: 2013-09-29 10:45+0900\n"
 "Last-Translator: Charles Plessy <>\n"
 "Language-Team: Hopla\n"
@@ -50,11 +50,13 @@ msgstr ""
 #| "au Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore "
 #| "quelques images de mes [poissons transgéniques][gfp] sur ce site."
 msgid ""
-"Je travaille au [RIKEN][] depuis quelques années, et j'y développe des "
-"technologies pour mesurer l'activité des cellules en séquençant leurs ARN "
-"messagers.  Je publie mes [résultats en anglais][].  Avant de déménager au "
-"Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore quelques "
-"images de mes [poissons transgéniques][gfp] sur ce site."
+"Je travaille à [OIST][] depuis août 2018, et j'y étudie la séquence des "
+"chromosomes d'un petit animal planctonique appellé _[Oikopleura dioica][]_.  "
+"Auparavant, j'ai travaillé au [RIKEN][] pendant 14 ans, pour y développer "
+"des technologies pour mesurer l'activité des cellules en séquençant leurs "
+"ARN messagers.  Je publie mes [résultats en anglais][].  Avant de déménager "
+"au Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore "
+"quelques images de mes [poissons transgéniques][gfp] sur ce site."
 msgstr ""
 "I am working at [RIKEN](http://population-transcriptomics.org/ \"RIKEN "
 "CLST's Genomics Miniaturisation Technology Unit\") since some years, and "
@@ -69,6 +71,8 @@ msgstr ""
 #, fuzzy, no-wrap
 #| msgid "[RIKEN]: http://population-transcriptomics.org/ \"RIKEN CLST's Genomics Miniaturisation Technology Unit\" [zfin]: http://zfin.org/ZDB-PERS-010827-9 [gfp]: http://photo.charles.plessy.org/picture_gallery \"Gros plans sur des poissons transgéniques\" [résultats en anglais]: http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c"
 msgid ""
+"[OIST]:   https://www.oist.jp/\n"
+"[Oikopleura dioica]:      https://en.wikipedia.org/wiki/Oikopleura_dioica\n"
 "[RIKEN]:  http://population-transcriptomics.org/\n"
 "[zfin]:   http://zfin.org/ZDB-PERS-010827-9\n"
 "[gfp]:    http://photo.charles.plessy.org/picture_gallery\n"

Mise à jour
diff --git a/index.mdwn b/index.mdwn
index d748668..67057d1 100644
--- a/index.mdwn
+++ b/index.mdwn
@@ -12,13 +12,16 @@ mes [[contributions|Debian/planète]] en tant que [développeur Debian][].
 [développeur Debian]:	http://qa.debian.org/developer.php?login=plessy
 
 
-Je travaille au [RIKEN][] depuis quelques années, et j'y développe des
+Je travaille à [OIST][] depuis août 2018, et j'y étudie la séquence des
+chromosomes d'un petit animal planctonique appellé _[Oikopleura dioica][]_.
+Auparavant, j'ai travaillé au [RIKEN][] pendant 14 ans, pour y développer des
 technologies pour mesurer l'activité des cellules en séquençant leurs ARN
 messagers.  Je publie mes [résultats en anglais][].  Avant de déménager au
 Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore quelques
 images de mes [poissons transgéniques][gfp] sur ce site.
 
-
+[OIST]:   https://www.oist.jp/
+[Oikopleura dioica]:      https://en.wikipedia.org/wiki/Oikopleura_dioica
 [RIKEN]:  http://population-transcriptomics.org/
 [zfin]:   http://zfin.org/ZDB-PERS-010827-9
 [gfp]:    http://photo.charles.plessy.org/picture_gallery

updated PO files
diff --git a/index.en.po b/index.en.po
index 78e9db1..b24a170 100644
--- a/index.en.po
+++ b/index.en.po
@@ -2,7 +2,7 @@
 msgid ""
 msgstr ""
 "Project-Id-Version: \n"
-"POT-Creation-Date: 2019-06-04 01:47+0000\n"
+"POT-Creation-Date: 2019-06-04 01:48+0000\n"
 "PO-Revision-Date: 2013-09-29 10:45+0900\n"
 "Last-Translator: Charles Plessy <>\n"
 "Language-Team: Hopla\n"
@@ -106,17 +106,13 @@ msgid ""
 msgstr "My pages in social networks: [viadeo]( http://www.viadeo.com/fr/profile/charles.plessy), [linkedin]( http://www.viadeo.com/fr/profile/charles.plessy), [Sciencescope](http://annuaire.sciencescope.org/), the association of the French-speaking researchers in Japan, and [copains d'avant](http://copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/).  I [[signed here|réseauxsociaux.txt]] these URLs with the [[!wikipedia Digital_signature desc=\"electronic key\"]] that I use at Debian.<form method=\"get\" action=\"http://pgp.cs.uu.nl/mk_path.cgi?\" id=\"clef\">If you have a key for signing electronic documents, you can check if it is connected to <a href=\"http://pgpkeys.mit.edu:11371/pks/lookup?op=vindex&search=0xC5BD6C8F2295D502\" title=\"Ma clef GPG\">my key</a> by entering its ID here:<input name=\"FROM\" size=\"10\" type=\"text\"><input name=\"TO\" value=\"2295D502\" type=\"hidden\"><input name=\"PATHS\" value=\"Search for a chain of trust.\" type=\"submit\"></form>\n"
 
 #. type: Plain text
-#, fuzzy
-#| msgid ""
-#| "[viadeo]: http://www.viadeo.com/fr/profile/charles.plessy [linkedin]: "
-#| "http://jp.linkedin.com/in/charlesplessy \"Ma page sur LinkedIn"
-#| "\" [annuaire]: http://annuaire.sciencescope.org/ [copainsdavant]: http://"
-#| "copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/"
+#, fuzzy, no-wrap
+#| msgid "[viadeo]: http://www.viadeo.com/fr/profile/charles.plessy [linkedin]: http://jp.linkedin.com/in/charlesplessy \"Ma page sur LinkedIn\" [annuaire]: http://annuaire.sciencescope.org/ [copainsdavant]: http://copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/"
 msgid ""
-"[viadeo]: http://www.viadeo.com/fr/profile/charles.plessy [linkedin]: http://"
-"jp.linkedin.com/in/charlesplessy [annuaire]: http://annuaire.sciencescope."
-"org/ [copainsdavant]: http://copainsdavant.linternaute.com/"
-"membre/520697/7398950458/charles_plessy/"
+"[viadeo]:     http://www.viadeo.com/fr/profile/charles.plessy\n"
+"[linkedin]:   http://jp.linkedin.com/in/charlesplessy\n"
+"[annuaire]:   http://annuaire.sciencescope.org/\n"
+"[copainsdavant]:   http://copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/\n"
 msgstr "<!-- Liens Markdown intégrés au paragraphe précédent. -->"
 
 #. type: Plain text

encore
diff --git a/index.mdwn b/index.mdwn
index 8d47166..d748668 100644
--- a/index.mdwn
+++ b/index.mdwn
@@ -39,10 +39,10 @@ value="2295D502" type="hidden"><input name="PATHS" value="Rechercher un chaîne
 de confiance." type="submit"></form>
 
 
-[viadeo]: http://www.viadeo.com/fr/profile/charles.plessy
-[linkedin]: http://jp.linkedin.com/in/charlesplessy
-[annuaire]: http://annuaire.sciencescope.org/
-[copainsdavant]: http://copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/
+[viadeo]:     http://www.viadeo.com/fr/profile/charles.plessy
+[linkedin]:   http://jp.linkedin.com/in/charlesplessy
+[annuaire]:   http://annuaire.sciencescope.org/
+[copainsdavant]:   http://copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/
 
 
 ---

updated PO files
diff --git a/index.en.po b/index.en.po
index f52b36c..78e9db1 100644
--- a/index.en.po
+++ b/index.en.po
@@ -2,7 +2,7 @@
 msgid ""
 msgstr ""
 "Project-Id-Version: \n"
-"POT-Creation-Date: 2019-06-04 01:45+0000\n"
+"POT-Creation-Date: 2019-06-04 01:47+0000\n"
 "PO-Revision-Date: 2013-09-29 10:45+0900\n"
 "Last-Translator: Charles Plessy <>\n"
 "Language-Team: Hopla\n"
@@ -66,17 +66,13 @@ msgstr ""
 "picture_gallery) on this website."
 
 #. type: Plain text
-#, fuzzy
-#| msgid ""
-#| "[RIKEN]: http://population-transcriptomics.org/ \"RIKEN CLST's Genomics "
-#| "Miniaturisation Technology Unit\" [zfin]: http://zfin.org/ZDB-"
-#| "PERS-010827-9 [gfp]: http://photo.charles.plessy.org/picture_gallery "
-#| "\"Gros plans sur des poissons transgéniques\" [résultats en anglais]: "
-#| "http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c"
+#, fuzzy, no-wrap
+#| msgid "[RIKEN]: http://population-transcriptomics.org/ \"RIKEN CLST's Genomics Miniaturisation Technology Unit\" [zfin]: http://zfin.org/ZDB-PERS-010827-9 [gfp]: http://photo.charles.plessy.org/picture_gallery \"Gros plans sur des poissons transgéniques\" [résultats en anglais]: http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c"
 msgid ""
-"[RIKEN]: http://population-transcriptomics.org/ [zfin]: http://zfin.org/ZDB-"
-"PERS-010827-9 [gfp]: http://photo.charles.plessy.org/picture_gallery "
-"[résultats en anglais]: http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c"
+"[RIKEN]:  http://population-transcriptomics.org/\n"
+"[zfin]:   http://zfin.org/ZDB-PERS-010827-9\n"
+"[gfp]:    http://photo.charles.plessy.org/picture_gallery\n"
+"[résultats en anglais]:   http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c\n"
 msgstr "<!-- Liens Markdown intégrés au paragraphe précédent. -->"
 
 #. type: Plain text

On essaye encore
diff --git a/index.mdwn b/index.mdwn
index ce0e360..8d47166 100644
--- a/index.mdwn
+++ b/index.mdwn
@@ -19,10 +19,10 @@ Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore quelques
 images de mes [poissons transgéniques][gfp] sur ce site.
 
 
-[RIKEN]: http://population-transcriptomics.org/
-[zfin]: http://zfin.org/ZDB-PERS-010827-9
-[gfp]: http://photo.charles.plessy.org/picture_gallery
-[résultats en anglais]: http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c
+[RIKEN]:  http://population-transcriptomics.org/
+[zfin]:   http://zfin.org/ZDB-PERS-010827-9
+[gfp]:    http://photo.charles.plessy.org/picture_gallery
+[résultats en anglais]:   http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c
 
 
 Mes pages dans des annuaires ou des réseaux : [viadeo][], [linkedin][],

updated PO files
diff --git a/index.en.po b/index.en.po
index d819167..f52b36c 100644
--- a/index.en.po
+++ b/index.en.po
@@ -2,7 +2,7 @@
 msgid ""
 msgstr ""
 "Project-Id-Version: \n"
-"POT-Creation-Date: 2019-05-22 22:29+0000\n"
+"POT-Creation-Date: 2019-06-04 01:45+0000\n"
 "PO-Revision-Date: 2013-09-29 10:45+0900\n"
 "Last-Translator: Charles Plessy <>\n"
 "Language-Team: Hopla\n"
@@ -50,13 +50,11 @@ msgstr ""
 #| "au Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore "
 #| "quelques images de mes [poissons transgéniques][gfp] sur ce site."
 msgid ""
-"Je travaille à OIST [OIST][], où nous étudions un petit zooplankton appelé "
-"_Oikopleura dioica_ en séquençant le génome d'individus isolés.  Je publie "
-"mes [résultats en anglais][].  Avant déménager à Okinawa, je développais au "
-"RIKEN[] (Yokohama) des technologies pour mesurer l'activité des cellules en "
-"séquençant leurs ARN messagers.  et avant de déménager au Japon, j'étudiais "
-"le [poisson-zèbre][zfin] à Illkirch.  J'ai encore quelques images de mes "
-"[poissons transgéniques][gfp] sur ce site."
+"Je travaille au [RIKEN][] depuis quelques années, et j'y développe des "
+"technologies pour mesurer l'activité des cellules en séquençant leurs ARN "
+"messagers.  Je publie mes [résultats en anglais][].  Avant de déménager au "
+"Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore quelques "
+"images de mes [poissons transgéniques][gfp] sur ce site."
 msgstr ""
 "I am working at [RIKEN](http://population-transcriptomics.org/ \"RIKEN "
 "CLST's Genomics Miniaturisation Technology Unit\") since some years, and "
@@ -76,11 +74,9 @@ msgstr ""
 #| "\"Gros plans sur des poissons transgéniques\" [résultats en anglais]: "
 #| "http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c"
 msgid ""
-"[OIST]: https://www.oist.jp/ [RIKEN]: http://population-transcriptomics.org/ "
-"\"RIKEN CLST's Genomics Miniaturisation Technology Unit\" [zfin]: http://"
-"zfin.org/ZDB-PERS-010827-9 [gfp]: http://photo.charles.plessy.org/"
-"picture_gallery \"Gros plans sur des poissons transgéniques\" [résultats en "
-"anglais]: http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c"
+"[RIKEN]: http://population-transcriptomics.org/ [zfin]: http://zfin.org/ZDB-"
+"PERS-010827-9 [gfp]: http://photo.charles.plessy.org/picture_gallery "
+"[résultats en anglais]: http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c"
 msgstr "<!-- Liens Markdown intégrés au paragraphe précédent. -->"
 
 #. type: Plain text
@@ -114,11 +110,17 @@ msgid ""
 msgstr "My pages in social networks: [viadeo]( http://www.viadeo.com/fr/profile/charles.plessy), [linkedin]( http://www.viadeo.com/fr/profile/charles.plessy), [Sciencescope](http://annuaire.sciencescope.org/), the association of the French-speaking researchers in Japan, and [copains d'avant](http://copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/).  I [[signed here|réseauxsociaux.txt]] these URLs with the [[!wikipedia Digital_signature desc=\"electronic key\"]] that I use at Debian.<form method=\"get\" action=\"http://pgp.cs.uu.nl/mk_path.cgi?\" id=\"clef\">If you have a key for signing electronic documents, you can check if it is connected to <a href=\"http://pgpkeys.mit.edu:11371/pks/lookup?op=vindex&search=0xC5BD6C8F2295D502\" title=\"Ma clef GPG\">my key</a> by entering its ID here:<input name=\"FROM\" size=\"10\" type=\"text\"><input name=\"TO\" value=\"2295D502\" type=\"hidden\"><input name=\"PATHS\" value=\"Search for a chain of trust.\" type=\"submit\"></form>\n"
 
 #. type: Plain text
+#, fuzzy
+#| msgid ""
+#| "[viadeo]: http://www.viadeo.com/fr/profile/charles.plessy [linkedin]: "
+#| "http://jp.linkedin.com/in/charlesplessy \"Ma page sur LinkedIn"
+#| "\" [annuaire]: http://annuaire.sciencescope.org/ [copainsdavant]: http://"
+#| "copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/"
 msgid ""
 "[viadeo]: http://www.viadeo.com/fr/profile/charles.plessy [linkedin]: http://"
-"jp.linkedin.com/in/charlesplessy \"Ma page sur LinkedIn\" [annuaire]: http://"
-"annuaire.sciencescope.org/ [copainsdavant]: http://copainsdavant.linternaute."
-"com/membre/520697/7398950458/charles_plessy/"
+"jp.linkedin.com/in/charlesplessy [annuaire]: http://annuaire.sciencescope."
+"org/ [copainsdavant]: http://copainsdavant.linternaute.com/"
+"membre/520697/7398950458/charles_plessy/"
 msgstr "<!-- Liens Markdown intégrés au paragraphe précédent. -->"
 
 #. type: Plain text

Try to fix index page.
diff --git a/index.mdwn b/index.mdwn
index 9e9478e..ce0e360 100644
--- a/index.mdwn
+++ b/index.mdwn
@@ -19,9 +19,9 @@ Japon, j'étudiais le [poisson-zèbre][zfin] à Illkirch.  J'ai encore quelques
 images de mes [poissons transgéniques][gfp] sur ce site.
 
 
-[RIKEN]: http://population-transcriptomics.org/ "RIKEN CLST's Genomics Miniaturisation Technology Unit"
+[RIKEN]: http://population-transcriptomics.org/
 [zfin]: http://zfin.org/ZDB-PERS-010827-9
-[gfp]: http://photo.charles.plessy.org/picture_gallery "Gros plans sur des poissons transgéniques"
+[gfp]: http://photo.charles.plessy.org/picture_gallery
 [résultats en anglais]: http://www.ncbi.nlm.nih.gov/pubmed?term=plessy%20c
 
 
@@ -40,7 +40,7 @@ de confiance." type="submit"></form>
 
 
 [viadeo]: http://www.viadeo.com/fr/profile/charles.plessy
-[linkedin]: http://jp.linkedin.com/in/charlesplessy "Ma page sur LinkedIn"
+[linkedin]: http://jp.linkedin.com/in/charlesplessy
 [annuaire]: http://annuaire.sciencescope.org/
 [copainsdavant]: http://copainsdavant.linternaute.com/membre/520697/7398950458/charles_plessy/
 

tiramisu
diff --git a/biblio/10.6620_ZS.2016.55-28.mdwn b/biblio/10.6620_ZS.2016.55-28.mdwn
new file mode 100644
index 0000000..952470f
--- /dev/null
+++ b/biblio/10.6620_ZS.2016.55-28.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Taxonomic Composition and Seasonal Distribution Changes of Pelagic Tunicates in the Waters Off Nuclear Power Plants in Northern Taiwan in Relation to Environmental Conditions"]]
+[[!tag Oikopleura]]
+
+Pietro Franco, HongJu Chen, Jiang Shiou Hwang.
+
+Zoological Studies 55: 28 (2016). doi:10.6620/ZS.2016.55-28
+
+Taxonomic Composition and Seasonal Distribution Changes of Pelagic Tunicates in the Waters Off Nuclear Power Plants in Northern Taiwan in Relation to Environmental Conditions.
+
+[[!doi 10.6620/ZS.2016.55-28 desc="O. dioica found in North-East taiwanese cosatal waters in 2014-2015, most abundant in summer and always the most abundant appendicularian.  No impact of the power plants was found."]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 773d4fd..bb8a48a 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -422,7 +422,9 @@ Ecology
  - While _O. dioica_ was not reported on the atlantic and pacific coasts of Costa Rica, its
    presence is considered plausible ([[Castellanos, Morales-Ramírez and Suárez-Morales,
    2009|biblio/10.1007_978-1-4020-8278-8_41]]).
- - _O. dioica_ was found in 7 coastal sampling sites distributed around Taiwan in 2017
-   by [[Franco and coll.|biblio/10.1080_00222933.2017.1293180]]
+ - _O. dioica_ was found in coastal sampling sites distributed around Taiwan in 2014,
+   2015, and 2017, and was almost always the most abundant appendicularian.  It was
+   most abundant in summer ([[Franco and coll,. 2016|biblio/10.6620_ZS.2016.55-28]],
+   [[Franco and coll., 2017|biblio/10.1080_00222933.2017.1293180]]).
 
 [[!inline pages="tagged(Oikopleura)" actions="no" limit=0]]

Café
diff --git a/biblio/10.1080_00222933.2017.1293180.mdwn b/biblio/10.1080_00222933.2017.1293180.mdwn
new file mode 100644
index 0000000..70d777a
--- /dev/null
+++ b/biblio/10.1080_00222933.2017.1293180.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Pelagic tunicates in the China Seas"]]
+[[!tag Oikopleura]]
+
+P. Franco, H.-U. Dahms, W.-T. Lo & J.-S. Hwang
+
+Journal of Natural History, 2017, 51:15-16, 917-936, DOI:10.1080/00222933.2017.1293180
+
+Pelagic tunicates in the China Seas
+
+[[!doi 10.1080/00222933.2017.1293180 desc="O. dioica is found coastal areas all around Taiwan and was most abundant in 6/7 sampling sites."]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 40fae2a..773d4fd 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -422,5 +422,7 @@ Ecology
  - While _O. dioica_ was not reported on the atlantic and pacific coasts of Costa Rica, its
    presence is considered plausible ([[Castellanos, Morales-Ramírez and Suárez-Morales,
    2009|biblio/10.1007_978-1-4020-8278-8_41]]).
+ - _O. dioica_ was found in 7 coastal sampling sites distributed around Taiwan in 2017
+   by [[Franco and coll.|biblio/10.1080_00222933.2017.1293180]]
 
 [[!inline pages="tagged(Oikopleura)" actions="no" limit=0]]

Dans l'avion
diff --git a/biblio/31097474.mdwn b/biblio/31097474.mdwn
new file mode 100644
index 0000000..610b302
--- /dev/null
+++ b/biblio/31097474.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2A.Z-containing nucleosomes."]]
+[[!tag histone yeast]]
+
+Genome Res. 2019 May 16. pii: gr.243139.118. doi:10.1101/gr.243139.118
+
+Cakiroglu A, Clapier CR, Ehrensberger AH, Darbo E, Cairns BR, Luscombe NM, Svejstrup J.
+
+Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2A.Z-containing nucleosomes.
+
+[[!pmid 31097474 desc="H2A.Z-containing nucleosomes are preferentially found at TSSes.  The RSC can exert its action on single mononucleosomes: it does not need more context."]]

Café
diff --git a/biblio/10.1111_j.1744-7410.2001.tb00038.x.mdwn b/biblio/10.1111_j.1744-7410.2001.tb00038.x.mdwn
new file mode 100644
index 0000000..fc8ce97
--- /dev/null
+++ b/biblio/10.1111_j.1744-7410.2001.tb00038.x.mdwn
@@ -0,0 +1,21 @@
+[[!meta title="Gut ultrastructure of the appendicularian Oikopleura dioica (Tunicata)"]]
+[[!tag Oikopleura]]
+
+Paolo Burighel, Carlo Brena, Gian Bruno Martinucci, Francesca Cima
+
+Invertebrate Biology, 120: 278-293. doi:10.1111/j.1744-7410.2001.tb00038.x
+
+Gut ultrastructure of the appendicularian _Oikopleura dioica_ (Tunicata)
+
+[[!doi 10.1111/j.1744-7410.2001.tb00038.x desc="“We propose the following
+hypothesis for food processing in the alimentary canal. Absorption of
+material digested by the enzymes of the gastric band begins in the left lobe of
+the stomach. In the globular cells, endocytosis of macromolecules may occur,
+followed by intracellular digestion. Absorption continues in the right lobe of
+the stomach, where the ciliated microvillar cells store material in the form
+of lipid droplets. In the stomach, food is wrapped in a peritrophic membrane
+secreted by the epithelium, and fecal pellets form in the vertical intestine.
+These pellets advance through the intestine, while absorption continues in the
+ciliated microvillar and rectal globular cells; proteins are stored in the
+rectum. The gut epithelium might also be involved in ion and liquid transport
+for absorption and/or osmoregulation of internal fluid.”"]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 92f0d02..40fae2a 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -331,6 +331,12 @@ Physiology
  - Some members of retinoic acid pathway gene network that were not lost in _O. dioica_ show
    signs of neofunctionalisation or specialisation in their ancestral activity in
    digestion or chemical defence ([[Martí-Solans et al., 2016|biblio/27406791]]).
+ - Ciliated cells move the food through the digestive system.  Protein
+   production, probably digestive enzymes, is strong in the gastric band of
+   both stomach lobes.  Endocytosis is visible in the left lobe of the stomach and
+   the rectum.  Lipid uptake might happen in the right lobe of the stomach
+   ([[Burighel, Brena, Martinucci and Cima
+   (2005)|biblio/10.1111_j.1744-7410.2001.tb00038.x]]).
 
 
 House

Mdwn
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 0c9fa4e..92f0d02 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -138,7 +138,6 @@ Genes and pathways
 
  - ~80 "house proteins" have been identified and more than half lack similarity
    to known proteins ([[Hosp et al., 2012|biblio/22792236]]).
-
  - Histones: “Densitometric analyses of Southern blots yielded estimates of
    9–11 H4 genes, 11–14 H3 genes, 15–19 H2A genes, 18–20 H2B genes, and 4–7 H1
    genes” ([[Chioda, Eskeland and Thompson, 2002|biblio/12446815]]).  “47 histone

Histones
diff --git a/biblio/21756361.mdwn b/biblio/21756361.mdwn
new file mode 100644
index 0000000..4b8bc5b
--- /dev/null
+++ b/biblio/21756361.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Histone variant innovation in a rapidly evolving chordate lineage."]]
+[[!tag Oikopleura histone]]
+
+Histone variant innovation in a rapidly evolving chordate lineage.
+
+BMC Evol Biol. 2011 Jul 15;11:208. doi: 10.1186/1471-2148-11-208.
+
+Moosmann A, Campsteijn C, Jansen PW, Nasrallah C, Raasholm M, Stunnenberg HG, Thompson EM.
+
+[[!pmid 21756361 desc="“47 histone genes (6 H4, 10 H3, 15 H2A, 11 H2B and 5 H1 genes) encoding 31 different histone proteins (2 H4, 6 H3, 11 H2A, 7 H2B and 5 H1) were identified.” “There is no H2AX homolog in O. dioica.” (H2AX is implicated in DNA repair)."]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 17acb7e..0c9fa4e 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -138,9 +138,13 @@ Genes and pathways
 
  - ~80 "house proteins" have been identified and more than half lack similarity
    to known proteins ([[Hosp et al., 2012|biblio/22792236]]).
- - “Densitometric analyses of Southern blots yielded estimates of 9–11 H4
-   genes, 11–14 H3 genes, 15–19 H2A genes, 18–20 H2B genes, and 4–7 H1 genes.”
-   [[Chioda, Eskeland and Thompson, 2002|biblio/12446815]]
+
+ - Histones: “Densitometric analyses of Southern blots yielded estimates of
+   9–11 H4 genes, 11–14 H3 genes, 15–19 H2A genes, 18–20 H2B genes, and 4–7 H1
+   genes” ([[Chioda, Eskeland and Thompson, 2002|biblio/12446815]]).  “47 histone
+   genes (6 H4, 10 H3, 15 H2A, 11 H2B and 5 H1 genes) encoding 31 different
+   histone proteins (2 H4, 6 H3, 11 H2A, 7 H2B and 5 H1) were identified”
+   ([[Moosmann and coll., 2011|biblio/21756361]]).
  - 2 cellulose synthase genes, possibly acquired by horizontal gene transfer
    from an actinobacteria ([[Nakashima and coll., 2004|biblio/14740209]]), were
    found by [[Sagane et al. (2010)|biblio/20335363]] and [[Nakashima et al.
@@ -186,6 +190,8 @@ Genes and pathways
    conserved from yeast to mammals) is undetectable ([[Denoeud et al., 2010|biblio/21097902]]).
    An alternative or microhomology (MH)-driven end joining pathway is active
    and triggers microdeletions at the joining site ([[Deng, Henriet and Chourrout, 2018|biblio/30293719]]).
+ - In line with the above, “There is no H2AX homolog in O. dioica.” (H2AX is
+   implicated in DNA repair).  [[Moosmann and coll., 2011|biblio/21756361]]
  - The minor spliceosome could not be found in _Oikopleura_'s genome ([[Martz
    et al., 2008|biblio/19030770]]), [[Denoeud et al., 2010|biblio/21097902]]).
    It is found in _Ciona_ but not in _C. elegans_ ([[Martz et al.,

creating tag page tags/species
diff --git a/tags/species.mdwn b/tags/species.mdwn
new file mode 100644
index 0000000..99f657b
--- /dev/null
+++ b/tags/species.mdwn
@@ -0,0 +1,4 @@
+[[!meta title="pages tagged species"]]
+
+[[!inline pages="tagged(species)" actions="no" archive="yes"
+feedshow=10]]

Ciona
diff --git a/biblio/10.1111_jzs.12101.mdwn b/biblio/10.1111_jzs.12101.mdwn
new file mode 100644
index 0000000..5151874
--- /dev/null
+++ b/biblio/10.1111_jzs.12101.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Morphological evidence that the molecularly determined Ciona intestinalis type A and type B are different species: Ciona robusta and Ciona intestinalis."]]
+[[!tag Ciona species]]
+
+Brunetti, R. , Gissi, C. , Pennati, R. , Caicci, F. , Gasparini, F. and Manni, L. 
+
+J Zoolog Syst Evol Res, 2015, 53: 186-193. doi:10.1111/jzs.12101
+
+Morphological evidence that the molecularly determined Ciona intestinalis type A and type B are different species: _Ciona robusta_ and _Ciona intestinalis_.
+
+[[!doi 10.1111_jzs.12101 desc="Discriminates C. robusta from C. intestinalis by the presence of tubercular prominences in the tunic."]]
diff --git a/tags/Ciona.mdwn b/tags/Ciona.mdwn
index 77551c2..23058f7 100644
--- a/tags/Ciona.mdwn
+++ b/tags/Ciona.mdwn
@@ -25,13 +25,18 @@ were F1 and of _C. int_ maternal origin.
 Comparison of mitochnodrial CO1 sequences show that _C. intestinalis_ types A
 and B (now renamed _robusta_ and _intestinalis sensu_) are as distant as
 distinct species ([[Nydam and Harrison,
-2007|biblio/10.1007_s00227-007-0617-0]]).  Mitochondrial gene order differ
-between the two species ([[Ianelli and coll., 2007|biblio/17640763]]).
-Sequencing of nuclear genes showed intragenic recombination in _C. robusta_ and
-_C. intestinalis_, buy supported monophyly of these two species.  Both data
-also supported paraphyly of _C. intestinalis_ with respcet to _C. roulei_
-([[Nydam and Harrison, 2010|biblio/20403444]]).  Speciation is estimated to
-have happened during the Pliocene (≈ 3.8 Ma); a recent introgression then
-happened 15,000 years ago ([[Roux and coll., 2013|biblio/23564941]]).
+2007|biblio/10.1007_s00227-007-0617-0]]).  [[Caputi and coll.,
+2007|biblio/17517633]] and others proposed to use some pigmentation differences
+as a morphological marker.  In 2015, [[Brunetti and
+coll|biblio/10.1111_jzs.12101]] proposed the presence of “tubercular
+prominences” in the tunic as a more accurate morphological marker.
+Mitochondrial gene order differ between the two species ([[Ianelli and coll.,
+2007|biblio/17640763]]).  Sequencing of nuclear genes showed intragenic
+recombination in _C. robusta_ and _C. intestinalis_, buy supported monophyly of
+these two species.  Both data also supported paraphyly of _C. intestinalis_
+with respcet to _C. roulei_ ([[Nydam and Harrison, 2010|biblio/20403444]]).
+Speciation is estimated to have happened during the Pliocene (≈ 3.8 Ma); a
+recent introgression then happened 15,000 years ago ([[Roux and coll.,
+2013|biblio/23564941]]).
 
 [[!inline pages="tagged(Ciona)" actions="no" limit=0]]

Now in PubMed.
diff --git a/biblio/10.2307_1934145.mdwn b/biblio/28973811.mdwn
similarity index 73%
rename from biblio/10.2307_1934145.mdwn
rename to biblio/28973811.mdwn
index 580e475..fcce507 100644
--- a/biblio/10.2307_1934145.mdwn
+++ b/biblio/28973811.mdwn
@@ -7,4 +7,4 @@ Ecology 52:577–586 (1971)
 
 The Nonconcept of Species Diversity: A Critique and Alternative Parameters
 
-[[!doi 10.2307/1934145 desc="Base of the “rarefy” function in R's “vegan” package."]]
+[[!pmid 28973811 desc="Base of the “rarefy” function in R's “vegan” package."]]

Cellulose in O. rufescens
diff --git a/biblio/11732199.mdwn b/biblio/11732199.mdwn
new file mode 100644
index 0000000..90ac70f
--- /dev/null
+++ b/biblio/11732199.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Cellulose in the house of the appendicularian Oikopleura rufescens."]]
+[[!tag Oikopleura cellulose]]
+
+Kimura S, Ohshima C, Hirose E, Nishikawa J, Itoh T.
+
+Protoplasma. 2001;216(1-2):71-4.
+
+Cellulose in the house of the appendicularian Oikopleura rufescens.
+
+[[!pmid 11732199 desc="Electron diffraction analysis found highly crystalline cellulose I."]]
diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index 5a67836..17acb7e 100644
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -145,9 +145,10 @@ Genes and pathways
    from an actinobacteria ([[Nakashima and coll., 2004|biblio/14740209]]), were
    found by [[Sagane et al. (2010)|biblio/20335363]] and [[Nakashima et al.
    (2011)|biblio/20972815]].  They are used to produce different crystalline forms
-   of cellulose ([[Nakashima et al., 2011|biblio/20972815]]).  The CesA gene
-   is trans-spliced in the ascidian _Ciona intestinalis_ ([[Matthysse and coll.,
-   2004|biblio/14722352]]).
+   of cellulose ([[Nakashima et al., 2011|biblio/20972815]]).  Crystalline
+   cellulose I was also found in _O. rufescens by_ [[Kimura and coll
+   (2001)|biblio/11732199]]. The CesA gene is trans-spliced in the ascidian _Ciona
+   intestinalis_ ([[Matthysse and coll., 2004|biblio/14722352]]).
  - _O. dioica_ has multiple CDK1 and Cyclin B paraplogs, some of which are
    implicated in oogenesis ([[Feng & Thompson, 2018|biblio/29969934]]).
  - _O. dioica_, like other deuterostomes, has acid-sensing ion channels (ASICs).

mmmhhhh
diff --git "a/Debian/debi\303\242neries/mime-iana.en.po" "b/Debian/debi\303\242neries/mime-iana.en.po"
index 106e5ea..1aa7a80 100644
--- "a/Debian/debi\303\242neries/mime-iana.en.po"
+++ "b/Debian/debi\303\242neries/mime-iana.en.po"
@@ -7,7 +7,7 @@ msgid ""
 msgstr ""
 "Project-Id-Version: \n"
 "POT-Creation-Date: 2019-05-22 22:31+0000\n"
-"PO-Revision-Date: 2019-05-23 07:32+0900\n"
+"PO-Revision-Date: 2019-05-23 08:30+0900\n"
 "Last-Translator: Charles Plessy <toto@example.com>\n"
 "Language-Team: \n"
 "Language: en\n"

typo
diff --git "a/Debian/debi\303\242neries/mime-iana.en.po" "b/Debian/debi\303\242neries/mime-iana.en.po"
index c6a123d..106e5ea 100644
--- "a/Debian/debi\303\242neries/mime-iana.en.po"
+++ "b/Debian/debi\303\242neries/mime-iana.en.po"
@@ -7,7 +7,7 @@ msgid ""
 msgstr ""
 "Project-Id-Version: \n"
 "POT-Creation-Date: 2019-05-22 22:31+0000\n"
-"PO-Revision-Date: 2019-05-23 07:30+0900\n"
+"PO-Revision-Date: 2019-05-23 07:32+0900\n"
 "Last-Translator: Charles Plessy <toto@example.com>\n"
 "Language-Team: \n"
 "Language: en\n"
@@ -39,14 +39,6 @@ msgid "[[!meta title=\"Enregistrez vos types media auprès de l'IANA !\"]]\n"
 msgstr "[[!meta title=\"Register your media types to the IANA !\"]]\n"
 
 #. type: Plain text
-#, fuzzy
-#| msgid ""
-#| "En qualité de mainteneur du paquet (mime-support)[https://packages.debian."
-#| "org/mime-support] dans Debian, je voudrais dire « kudos » à Petter "
-#| "Reinholdtsen, qui a ouvert un ticket à l'IANA pour créer le type media "
-#| "[text/vnd.sosi](http://people.skolelinux.org/pere/blog/"
-#| "MIME_type__text_vnd_sosi__for_SOSI_map_data.html).  Que son example soit "
-#| "suivi !"
 msgid ""
 "En qualité de mainteneur du paquet [`mime-support`](https://packages.debian."
 "org/mime-support]) dans Debian, je voudrais dire « kudos » à Petter "
@@ -55,8 +47,8 @@ msgid ""
 "MIME_type__text_vnd_sosi__for_SOSI_map_data.html).  Que son example soit "
 "suivi !"
 msgstr ""
-"As the maintainer of the (mime-support)[https://packages.debian.org/mime-"
-"support] in Debian, I would like to give Kudos to  Petter Reinholdtsen, who "
+"As the maintainer of the [`mime-support`](https://packages.debian.org/mime-"
+"support) in Debian, I would like to give Kudos to  Petter Reinholdtsen, who "
 "just opened a ticket at the IANA to create a [text/vnd.sosi](http://people."
 "skolelinux.org/pere/blog/MIME_type__text_vnd_sosi__for_SOSI_map_data.html) "
 "media type. May  his example be followed by others!"

updated PO files
diff --git "a/Debian/debi\303\242neries/mime-iana.en.po" "b/Debian/debi\303\242neries/mime-iana.en.po"
index 65cccc7..c6a123d 100644
--- "a/Debian/debi\303\242neries/mime-iana.en.po"
+++ "b/Debian/debi\303\242neries/mime-iana.en.po"
@@ -6,7 +6,7 @@
 msgid ""
 msgstr ""
 "Project-Id-Version: \n"
-"POT-Creation-Date: 2019-05-22 22:30+0000\n"
+"POT-Creation-Date: 2019-05-22 22:31+0000\n"
 "PO-Revision-Date: 2019-05-23 07:30+0900\n"
 "Last-Translator: Charles Plessy <toto@example.com>\n"
 "Language-Team: \n"
@@ -39,9 +39,17 @@ msgid "[[!meta title=\"Enregistrez vos types media auprès de l'IANA !\"]]\n"
 msgstr "[[!meta title=\"Register your media types to the IANA !\"]]\n"
 
 #. type: Plain text
+#, fuzzy
+#| msgid ""
+#| "En qualité de mainteneur du paquet (mime-support)[https://packages.debian."
+#| "org/mime-support] dans Debian, je voudrais dire « kudos » à Petter "
+#| "Reinholdtsen, qui a ouvert un ticket à l'IANA pour créer le type media "
+#| "[text/vnd.sosi](http://people.skolelinux.org/pere/blog/"
+#| "MIME_type__text_vnd_sosi__for_SOSI_map_data.html).  Que son example soit "
+#| "suivi !"
 msgid ""
-"En qualité de mainteneur du paquet (mime-support)[https://packages.debian."
-"org/mime-support] dans Debian, je voudrais dire « kudos » à Petter "
+"En qualité de mainteneur du paquet [`mime-support`](https://packages.debian."
+"org/mime-support]) dans Debian, je voudrais dire « kudos » à Petter "
 "Reinholdtsen, qui a ouvert un ticket à l'IANA pour créer le type media [text/"
 "vnd.sosi](http://people.skolelinux.org/pere/blog/"
 "MIME_type__text_vnd_sosi__for_SOSI_map_data.html).  Que son example soit "

typo
diff --git "a/Debian/debi\303\242neries/mime-iana.mdwn" "b/Debian/debi\303\242neries/mime-iana.mdwn"
index 5bb7a36..c1ae25d 100644
--- "a/Debian/debi\303\242neries/mime-iana.mdwn"
+++ "b/Debian/debi\303\242neries/mime-iana.mdwn"
@@ -5,7 +5,7 @@
 [[!meta title="Enregistrez vos types media auprès de l'IANA !"]]
 
 En qualité de mainteneur du paquet
-(mime-support)[https://packages.debian.org/mime-support] dans Debian, je
+[`mime-support`](https://packages.debian.org/mime-support]) dans Debian, je
 voudrais dire « kudos » à Petter Reinholdtsen, qui a ouvert un ticket à l'IANA
 pour créer le type media
 [text/vnd.sosi](http://people.skolelinux.org/pere/blog/MIME_type__text_vnd_sosi__for_SOSI_map_data.html).