Frith MC, Valen E, Krogh A, Hayashizaki Y, Carninci P, Sandelin A.
Genome Res. 2008 Jan;18(1):1-12. doi:10.1101/gr.6831208
A code for transcription initiation in mammalian genomes.
Primary paper for paraclu. Local DNA sequence governs the selection of the TSS.