Chez Charles/ tags/ pages tagged yeast

Yeast and other unicellular fungi

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Novel chromosomes and genomes provide new insights into evolution and adaptation of the whole genome duplicated yeast-like fungus TN3-1 isolated from natural honey.
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Chromosome-level genome assemblies of Cutaneotrichosporon spp. (Trichosporonales, Basidiomycota) reveal imbalanced evolution between nucleotide sequences and chromosome synteny.
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Functional analysis of a random-sequence chromosome reveals a high level and the molecular nature of transcriptional noise in yeast cells
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Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts.
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Contrasting modes of macro and microsynteny evolution in a eukaryotic subphylum.
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Production of retinoic acid by engineered Saccharomyces cerevisiae using an endogenous aldehyde dehydrogenase.
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Transcriptional neighborhoods regulate transcript isoform lengths and expression levels.
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A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi.
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Comparative study on synteny between yeasts and vertebrates.
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Prevalence of small inversions in yeast gene order evolution
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Unusual composition of a yeast chromosome arm is associated with its delayed replication.
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A supernumerary designer chromosome for modular in vivo pathway assembly in Saccharomyces cerevisiae.
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Biosynthesis of medicinal tropane alkaloids in yeast.
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Sc3.0: revamping and minimizing the yeast genome
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Phenotypic Diversification by Enhanced Genome Restructuring After Induction of Multiple DNA Double-Strand Breaks
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Polymorphic Centromere Locations in the Pathogenic Yeast Candida parapsilosis
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Loss of centromere function drives karyotype evolution in closely related Malassezia species.
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Genome architecture and stability in the Saccharomyces cerevisiae knockout collection.
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Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome.
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Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
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Mechanisms of tRNA import into yeast mitochondria: an overview.
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High-resolution mapping of meiotic crossovers and non-crossovers in yeast.
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Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2A.Z-containing nucleosomes.
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de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
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Creating a functional single-chromosome yeast.
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Multiplexed precision genome editing with trackable genomic barcodes in yeast.
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Genome-scale engineering of Saccharomyces cerevisiae with single-nucleotide precision.
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The genome-wide rate and spectrum of spontaneous mutations differ between haploid and diploid yeast.
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Transcription of functionally related constitutive genes is not coordinated.
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Lethality and centrality in protein networks.
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A method for high-throughput production of sequence-verified DNA libraries and strain collections.
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Disruption of promoter memory by synthesis of a long noncoding RNA.
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High-throughput analysis of yeast replicative aging using a microfluidic system.
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Microfluidic high-throughput culturing of single cells for selection based on extracellular metabolite production or consumption.
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Control of Cdc28 CDK1 by a Stress-Induced lncRNA.
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lncRNA recruits RNAi and the exosome to dynamically regulate pho1 expression in response to phosphate levels in fission yeast.
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Periodic mRNA synthesis and degradation co-operate during cell cycle gene expression.
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Measuring chromatin interaction dynamics on the second time scale at single-copy genes.
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Mapping the fine structure of a eukaryotic promoter input-output function.
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Lariat sequencing in a unicellular yeast identifies regulated alternative splicing of exons that are evolutionarily conserved with humans.
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Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis.
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Mass spectrometry-based metabolomics of single yeast cells.
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Extensive transcriptional heterogeneity revealed by isoform profiling.
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RNAi triggered by specialized machinery silences developmental genes and retrotransposons.
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In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination.
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Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment.
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Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs.
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Genome-wide measurement of RNA secondary structure in yeast.
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