work in progress

Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition.

Adey A, Morrison HG, Asan, Xun X, Kitzman JO, Turner EH, Stackhouse B, MacKenzie AP, Caruccio NC, Zhang X, Shendure J.

Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition.

Genome Biol. 2010;11(12):R119. doi: 10.1186/gb-2010-11-12-r119

Tn5 tagmentation: in vitro transposase-catalyzed adaptor insertion.

Posted
RNA sequencing by direct tagmentation of RNA/DNA hybrids.

Di L, Fu Y, Sun Y, Li J, Liu L, Yao J, Wang G, Wu Y, Lao K, Lee RW, Zheng G, Xu J, Oh J, Wang D, Xie XS, Huang Y, Wang J.

Proc Natl Acad Sci U S A. 2020 Jan 27. pii: 201919800. doi:10.1073/pnas.1919800117

RNA sequencing by direct tagmentation of RNA/DNA hybrids.

Sequencing HEteRo RNA-DNA-hYbrid (SHERRY). Impact on size profile is much harder to notice compared with DNA/DNA tagmentation (Figs S9 and S10).

Posted
Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI).

Chen C, Xing D, Tan L, Li H, Zhou G, Huang L, Xie XS.

Science. 2017 Apr 14;356(6334):189-194. doi:10.1126/science.aak9787

Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI).

Tn5 tagmentation with custom adapters ending with T7 promoters, followed by linear amplification by transcription, followed by cDNA synthesis and sequencing.

Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing.

Nat Genet. 2014 Dec;46(12):1343-9. doi:10.1038/ng.3119

Amini S, Pushkarev D, Christiansen L, Kostem E, Royce T, Turk C, Pignatelli N, Adey A, Kitzman JO, Vijayan K, Ronaghi M, Shendure J, Gunderson KL, Steemers FJ.

Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing.

The Tn5 transposase still binds DNA after ligating its payload.

Posted
Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells.

Gole J, Gore A, Richards A, Chiu YJ, Fung HL, Bushman D, Chiang HI, Chun J, Lo YH, Zhang K.

Nat Biotechnol. 2013 Dec;31(12):1126-32. doi: 10.1038/nbt.2720

Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells.

Tn5 is not efficient on hyperbranched DNA. Random hexamers and DNA polymerase I were used to debranch the DNA.