RSS Atom

Abundant capped RNAs are derived from mRNA cleavage at 3’UTR G-Quadruplexes
Posted Thu May 11 00:42:25 2023

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
Posted Wed Aug 25 00:07:43 2021

Embryonic tissue differentiation is characterized by transitions in cell cycle dynamic- associated core promoter regulation.
Posted Mon Jul 13 05:12:26 2020

Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing.
Posted Wed Jan 15 09:32:42 2020

Unamplified cap analysis of gene expression on a single-molecule sequencer.
Posted Fri Jul 13 00:26:29 2018

Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate.
Posted Fri Apr 20 00:53:33 2018

Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome.
Posted Thu Apr 12 10:10:20 2018

Trans-Splicing and Operons in Metazoans: Translational Control in Maternally Regulated Development and Recovery from Growth Arrest.
Posted Fri Apr 6 13:11:45 2018

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data.
Posted Mon Feb 5 08:28:13 2018

5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing.
Posted Thu Feb 1 01:21:45 2018

Global transcript structure resolution of high gene density genomes through multi-platform data integration.
Posted Mon Jul 25 00:23:25 2016

Two independent transcription initiation codes overlap on vertebrate core promoters
Posted Wed Feb 19 07:50:11 2014

Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation.
Posted Mon Oct 7 01:07:21 2013

Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA.
Posted Thu Jan 31 08:18:24 2013

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression.
Posted Wed Jan 16 12:34:38 2013

Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching.
Posted Wed Jan 16 12:34:38 2013

Promoter architecture of mouse olfactory receptor genes.
Posted Mon Jan 16 03:50:05 2012

Genome-wide analysis of promoter architecture in Drosophila melanogaster.
Posted Mon Feb 28 07:54:37 2011

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
Posted Sun Jan 9 15:08:12 2011

Conserved role of intragenic DNA methylation in regulating alternative promoters.
Posted Sun Jan 9 15:08:12 2011

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.
Posted Sun Jan 9 15:08:12 2011

Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome.
Posted Sun Jan 9 15:08:12 2011