Chez Charles/ biblio/ Goel M, Sun H, Jiao WB, Schneeberger K. SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies.

Goel M, Sun H, Jiao WB, Schneeberger K.

Genome Biol. 2019 Dec 16;20(1):277. doi:10.1186/s13059-019-1911-0

SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies.

Identifies inversions, translocations, duplications, etc., but requires that the two genomes have the same number of chromosomes and that they are oriented the same direction.