work in progress
Tn5 tagmentation (“in vitro transposase-catalyzed adaptor insertion”): Adey and coll., 2010.
Method to produce Tn5 in a laboratory: Picelli and coll., 2014.
Tn5 can tagment RNA/DNA hybrids (Di and coll., 2020), but it is not efficient on hyperbranched DNA (Gole and coll., 2013).
Tn5 still binds after ligating its payload (Amini and coll., 2014).
Adey A, Morrison HG, Asan, Xun X, Kitzman JO, Turner EH, Stackhouse B, MacKenzie AP, Caruccio NC, Zhang X, Shendure J.
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition.
Genome Biol. 2010;11(12):R119. doi: 10.1186/gb-2010-11-12-r119
Tn5 tagmentation: in vitro transposase-catalyzed adaptor insertion.
Di L, Fu Y, Sun Y, Li J, Liu L, Yao J, Wang G, Wu Y, Lao K, Lee RW, Zheng G, Xu J, Oh J, Wang D, Xie XS, Huang Y, Wang J.
Proc Natl Acad Sci U S A. 2020 Jan 27. pii: 201919800. doi:10.1073/pnas.1919800117
RNA sequencing by direct tagmentation of RNA/DNA hybrids.
Picelli S, Björklund AK, Reinius B, Sagasser S, Winberg G, Sandberg R.
Genome Res. 2014 Dec;24(12):2033-40. doi:10.1101/gr.177881.114
Tn5 transposase and tagmentation procedures for massively scaled sequencing projects.
Chen C, Xing D, Tan L, Li H, Zhou G, Huang L, Xie XS.
Science. 2017 Apr 14;356(6334):189-194. doi:10.1126/science.aak9787
Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI).
Nat Genet. 2014 Dec;46(12):1343-9. doi:10.1038/ng.3119
Amini S, Pushkarev D, Christiansen L, Kostem E, Royce T, Turk C, Pignatelli N, Adey A, Kitzman JO, Vijayan K, Ronaghi M, Shendure J, Gunderson KL, Steemers FJ.
Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing.
The Tn5 transposase still binds DNA after ligating its payload.
Nat Commun. 2016 Jun 29;7:11784. doi: 10.1038/ncomms11784.
Lan F, Haliburton JR, Yuan A, Abate AR.
Droplet barcoding for massively parallel single-molecule deep sequencing.
Barcodes provided in a third molecule, integrated by PCR assembly.
Gole J, Gore A, Richards A, Chiu YJ, Fung HL, Bushman D, Chiang HI, Chun J, Lo YH, Zhang K.
Nat Biotechnol. 2013 Dec;31(12):1126-32. doi: 10.1038/nbt.2720
Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells.