Tous les articles.

An improved cultivation device for appendicularians with notes on the biology of Fritillaria sp. collected in Sagami Bay, Japan.
Posted Fri Nov 1 08:07:37 2024

Growth and reproductive toxicity of bisphenol A in Oikopleura dioica at environmentally relevant concentrations.
Posted Mon Sep 2 04:42:21 2024

The brittle star genome illuminates the genetic basis of animal appendage regeneration
Posted Fri Aug 30 07:25:46 2024

Pax37 gene function in Oikopleura dioica supports a neuroepithelial-like origin for its house-making Fol territory
Posted Fri Aug 30 07:25:46 2024

Tracing Homopolymers in Oikopleura dioica's mitogenome.
Posted Mon Aug 26 01:30:33 2024

Evolutionary Insights from the Mitochondrial Genome of Oikopleura dioica: Sequencing Challenges, RNA Editing, Gene Transfers to the Nucleus, and tRNA Loss
Posted Mon Aug 26 01:30:33 2024

Grazing of two common appendicularians on the natural prey assemblage of a tropical coastal ecosystem
Posted Wed Jul 31 08:22:10 2024

A new mesopelagic appendicularian, Mesochordaeus bahamasi gen. nov., sp. nov.
Posted Mon Jul 8 02:10:31 2024

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.
Posted Mon Jul 8 02:10:31 2024

Reproductive isolation arises during laboratory adaptation to a novel hot environment.
Posted Tue Jun 4 07:57:30 2024

Global ecological and biogeochemical impacts of pelagic tunicates
Posted Tue May 28 05:23:55 2024

Annelid comparative genomics and the evolution of massive lineage-specific genome rearrangement in bilaterians
Posted Tue May 28 05:17:55 2024

The cosmopolitan appendicularian Oikopleura dioica reveals hidden genetic diversity around the globe.
Posted Wed May 15 23:51:36 2024

Temporospatial hierarchy and allele-specific expression of zygotic genome activation revealed by distant interspecific urochordate hybrids.
Posted Wed May 15 23:51:36 2024

Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species.
Posted Wed May 15 23:51:36 2024

Comparative genomics reveals the dynamics of chromosome evolution in Lepidoptera.
Posted Tue Feb 27 09:22:27 2024

Fusion, fission, and scrambling of the bilaterian genome in Bryozoa
Posted Tue Feb 27 07:29:20 2024

Novel chromosomes and genomes provide new insights into evolution and adaptation of the whole genome duplicated yeast-like fungus TN3-1 isolated from natural honey.
Posted Tue Feb 6 05:55:46 2024

Robotic Search for Optimal Cell Culture in Regenerative Medicine
Posted Mon Jan 15 05:15:41 2024

Rapid evolution in Clarkia
Posted Mon Jan 15 05:10:55 2024

Developmental toxicity of pre-production plastic pellets affects a large swathe of invertebrate taxa
Posted Mon Jan 15 00:33:02 2024

Functional specialization of Aurora kinase homologs during oogenic meiosis in the tunicate Oikopleura dioica.
Posted Sat Dec 23 07:48:00 2023

Chromosome-level genome assemblies of Cutaneotrichosporon spp. (Trichosporonales, Basidiomycota) reveal imbalanced evolution between nucleotide sequences and chromosome synteny.
Posted Mon Dec 11 01:36:22 2023

The human genome contains over a million autonomous exons.
Posted Mon Dec 11 01:36:22 2023

The appendicularian Oikopleura dioica can enhance carbon export in a high CO2 ocean.
Posted Tue Nov 28 05:12:43 2023

The hydrodynamics and kinematics of the appendicularian tail underpin peristaltic pumping.
Posted Fri Nov 24 08:09:16 2023

Cycle vital d'un Appendiculaire Oikopleura dioica Fol, 1872 : description et chronologie
Posted Wed Nov 15 00:45:06 2023

Where the minor things are: a pan-eukaryotic survey suggests neutral processes may explain much of minor intron evolution.
Posted Wed Nov 15 00:45:06 2023

Robotic cell processing facility for clinical research of retinal cell therapy
Posted Mon Nov 6 23:29:10 2023

Fertilization in Oikopleura dioica (Tunicata, Appendicularia): Acrosome reaction, cortical reaction and sperm-egg fusion.
Posted Thu Nov 2 13:27:19 2023

Molecular mechanisms and topological consequences of drastic chromosomal rearrangements of muntjac deer
Posted Tue Oct 10 08:52:12 2023

Genomic basis of recombination suppression in the hybrid between Caenorhabditis briggsae and C. nigoni.
Posted Tue Oct 10 06:32:23 2023

Third generation sequencing revises the molecular karyotype for Toxoplasma gondii and identifies emerging copy number variants in sexual recombinants
Posted Tue Oct 10 06:32:23 2023

Chromosome-Wide Evolution and Sex Determination in the Three-Sexed Nematode Auanema rhodensis.
Posted Thu Sep 28 05:16:31 2023

Comparative genomics of 10 new _Caenorhabditis_ species.
Posted Thu Sep 28 05:08:29 2023

Evolutionary origin of genomic structural variations in domestic yaks.
Posted Wed Sep 20 23:40:25 2023

Gelatinous larvacean zooplankton can enhance trophic transfer and carbon sequestration.
Posted Tue Sep 19 06:56:35 2023

Mechanisms of insertions at a DNA double-strand break.
Posted Tue Sep 5 00:30:31 2023

Hepatitis C virus RNA is 5'-capped with flavin adenine dinucleotide
Posted Tue Aug 29 01:09:10 2023

NCBI Taxonomy: a comprehensive update on curation, resources and tools.
Posted Thu Jul 27 04:01:38 2023

Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids.
Posted Sun Jul 23 08:06:50 2023

Pyrococcus genome comparison evidences chromosome shuffling-driven evolution.
Posted Thu Jun 22 06:03:53 2023

Comparative genomics reveals conserved positioning of essential genomic clusters in highly rearranged Thermococcales chromosomes
Posted Thu Jun 22 06:03:53 2023

Replitrons: A major group of eukaryotic transposons encoding HUH endonuclease.
Posted Thu Jun 22 06:03:53 2023

Evolutionary traces of miniaturization in a giant-Comparative anatomy of brain and brain nerves in Bathochordaeus stygius (Tunicata, Appendicularia).
Posted Thu Jun 22 06:03:53 2023

Ancient gene linkages support ctenophores as sister to other animals.
Posted Mon Jun 5 23:50:23 2023

Evaluating genome dynamics: the constraints on rearrangements within bacterial genomes.
Posted Mon Jun 5 03:08:32 2023

Genome rearrangement by replication-directed translocation.
Posted Mon Jun 5 02:09:10 2023

Replication-associated inversions are the dominant form of bacterial chromosome structural variation.
Posted Sat Jun 3 04:14:29 2023

Evidence for symmetric chromosomal inversions around the replication origin in bacteria.
Posted Sat Jun 3 00:52:15 2023

Functional analysis of a random-sequence chromosome reveals a high level and the molecular nature of transcriptional noise in yeast cells
Posted Sat Jun 3 00:35:04 2023

Evolution of the ancestral mammalian karyotype and syntenic regions.
Posted Fri Jun 2 12:38:44 2023

Abundant capped RNAs are derived from mRNA cleavage at 3’UTR G-Quadruplexes
Posted Thu May 11 00:42:25 2023

A revised classification of the Tunicata, with definitions of the orders, sub-orders, families, sub-families and genera, and analytical keys to the species
Posted Mon May 1 07:32:23 2023

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage.
Posted Thu Apr 27 09:20:09 2023

The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing.
Posted Fri Apr 21 01:04:56 2023

Printing 2-dimentional droplet array for single-cell reverse transcription quantitative PCR assay with a microfluidic robot
Posted Wed Mar 22 08:35:28 2023

A Phylogenomic Framework and Divergence History of Cephalochordata Amphioxus.
Posted Thu Mar 16 02:36:19 2023

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions.
Posted Mon Mar 13 04:15:07 2023

Three amphioxus reference genomes reveal gene and chromosome evolution of chordates.
Posted Mon Mar 13 04:15:07 2023

Metabarcoding analysis of trophic sources and linkages in the plankton community of the Kuroshio and neighboring waters.
Posted Fri Feb 10 05:31:44 2023

Principles of genome evolution in the Drosophila melanogaster species group.
Posted Mon Feb 6 04:52:07 2023

Coevolution of the CDCA7-HELLS ICF-related nucleosome remodeling complex and DNA methyltransferases
Posted Mon Feb 6 00:57:59 2023

Generation of a widespread Drosophila inversion by a transposable element.
Posted Thu Jan 26 05:59:38 2023

Progressive Cactus is a multiple-genome aligner for the thousand-genome era.
Posted Wed Jan 25 06:51:02 2023

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water.
Posted Tue Jan 24 00:35:51 2023

Cactus graphs for genome comparisons.
Posted Tue Jan 24 00:35:51 2023

Estimation of secondary structure in ribonucleic acids.
Posted Thu Jan 5 04:28:08 2023

The diagram, a method for comparing sequences. Its use with amino acid and nucleotide sequences.
Posted Thu Jan 5 04:18:19 2023

Updating the 97% identity threshold for 16S ribosomal RNA OTUs.
Posted Thu Dec 22 07:24:17 2022

Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts.
Posted Thu Dec 22 07:24:17 2022

Contrasting modes of macro and microsynteny evolution in a eukaryotic subphylum.
Posted Wed Dec 21 09:10:05 2022

Chromosome-Level Reference Genomes for Two Strains of Caenorhabditis briggsae: An Improved Platform for Comparative Genomics.
Posted Wed Dec 21 03:52:36 2022

Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm.
Posted Tue Dec 20 05:36:05 2022

A telomere-to-telomere assembly of Oscheius tipulae and the evolution of rhabditid nematode chromosomes.
Posted Mon Dec 19 04:11:49 2022

A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes.
Posted Thu Dec 15 04:40:01 2022

Speed variations of bacterial replisomes.
Posted Thu Dec 15 00:00:24 2022

Remarks upon Appendicularia and Doliolum, Two Genera of the Tunicata
Posted Wed Dec 14 00:34:09 2022

Note sur un nouveau genre d'Appendiculaires.
Posted Tue Dec 13 23:54:43 2022

Hermann Fol, sa vie et ses travaux, avec un portrait
Posted Tue Dec 13 07:41:07 2022

Cell culture-based karyotyping of orectolobiform sharks for chromosome-scale genome analysis.
Posted Tue Dec 13 07:29:18 2022

Finding rearrangements in nanopore DNA reads with last and dnarrange
Posted Tue Dec 13 07:22:01 2022

Appendicularians: an important food supply for the Argentine anchovy Engraulis anchoita in coastal waters
Posted Tue Dec 13 01:57:36 2022

House formation and feeding behaviour of_Fritillaria borealis (Appendicularia: Tunicata)
Posted Tue Dec 13 01:44:40 2022

Appendicularia (Tunicata) in an Antarctic Glacial Fjord–Chaotic Fjordic Structure Community or Good Indicators of Oceanic Water Masses?
Posted Tue Dec 13 00:42:42 2022

Improved Nanopore full-length cDNA sequencing by PCR-suppression.
Posted Mon Nov 21 04:27:58 2022

Muscle5: High-accuracy alignment ensembles enable unbiased assessments of sequence homology and phylogeny.
Posted Thu Nov 17 04:53:54 2022

Fritillaria ragusina sp. nov., a new species of Appendicularia (Tunicata) from the Adriatic Sea.
Posted Wed Nov 9 10:40:04 2022

New mesopelagic larvaceans in the genus Fritillaria from Monterey Bay, California
Posted Fri Nov 4 02:12:30 2022

The highly specialised gut of Fritillariidae (Appendicularia: Tunicata).
Posted Wed Nov 2 07:25:15 2022

Laboratory study of Fritillaria lifecycle reveals key morphogenetic events leading to genus-specific anatomy.
Posted Wed Nov 2 05:57:27 2022

The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica.
Posted Tue Oct 18 04:00:55 2022

Chitin-based barrier immunity and its loss predated mucus-colonization by indigenous gut microbiota.
Posted Tue Oct 11 05:08:11 2022

Remarks upon Appendicularia and Doliolum, Two Genera of the Tunicata
Posted Thu Oct 6 04:14:53 2022

Evolution of the FGF Gene Family.
Posted Tue Oct 4 04:41:26 2022

Towards complete and error-free genome assemblies of all vertebrate species
Posted Tue Sep 27 04:27:11 2022

RNA recoding in cephalopods tailors microtubule motor protein function
Posted Tue Sep 27 04:21:51 2022

Production of retinoic acid by engineered Saccharomyces cerevisiae using an endogenous aldehyde dehydrogenase.
Posted Tue Sep 20 04:09:44 2022

An inverse small molecule screen to design a chemically defined medium supporting long-term growth of Drosophila cell lines.
Posted Fri Sep 16 02:35:37 2022

Comparison of six methods for Loa loa genomic DNA extraction.
Posted Thu Sep 15 06:04:29 2022

Polyamine as a growth promoter for cultured insect cells.
Posted Thu Sep 15 05:48:36 2022

Lipid and lipid class content of the pelagic tunicate Oikopleura vanhoeffeni
Posted Tue Sep 13 07:23:56 2022

Continued growth and cell proliferation into adulthood in the notochord of the appendicularian Oikopleura dioica.
Posted Tue Sep 13 06:03:56 2022

Genetic algorithm as an optimization tool for the development of sponge cell culture media
Posted Wed Sep 7 08:48:34 2022

Optimization of a feed medium for fed-batch culture of insect cells using a genetic algorithm
Posted Wed Sep 7 07:35:04 2022

Optimization of a fermentation medium using neural networks and genetic algorithms
Posted Wed Sep 7 07:30:29 2022

High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance.
Posted Thu Sep 1 02:45:28 2022

The Mechanism of Accumulation of Vanadium by Ascidians: Some Progress towards an Understanding of this Unusual Phenomenon
Posted Fri Jul 22 08:56:10 2022

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data.
Posted Thu Jul 21 03:05:52 2022

Rhythm of secretion of Oikopleurid's houses
Posted Thu Jul 7 04:19:54 2022

Measures of synteny conservation between species pairs.
Posted Fri Jul 1 06:29:57 2022

Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features
Posted Fri Jul 1 04:04:58 2022

Widespread introgression across a phylogeny of 155 Drosophila genomes
Posted Wed Jun 29 01:13:59 2022

Mixing genome annotation methods in a comparative analysis inflates the apparent number of lineage-specific genes.
Posted Wed Jun 22 03:33:41 2022

Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms
Posted Mon Jun 20 06:50:23 2022

Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes.
Posted Mon Jun 20 05:17:14 2022

Repeated translocation of a supergene underlying rapid sex chromosome turnover in Takifugu pufferfish.
Posted Mon Jun 20 05:17:14 2022

Convergent origins and rapid evolution of spliced leader trans-splicing in metazoa: insights from the ctenophora and hydrozoa.
Posted Thu Jun 16 01:24:56 2022

Multiscale analysis of the randomization limits of the chromosomal gene organization between Lepidoptera and Diptera.
Posted Mon Jun 13 06:17:28 2022

Telomere-to-Telomere Genome Assembly of _Bursaphelenchus okinawaensis_ Strain SH1.
Posted Fri Jun 10 01:39:30 2022

Fast and efficient DNA replication with purified human proteins.
Posted Tue Jun 7 04:25:33 2022

Goel M, Sun H, Jiao WB, Schneeberger K. SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies.
Posted Wed Jun 1 09:20:52 2022

Twin priming: a proposed mechanism for the creation of inversions in L1 retrotransposition.
Posted Mon May 30 06:12:31 2022

Collinearity and the genetic code
Posted Mon May 30 06:12:31 2022

Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization.
Posted Tue May 17 04:51:20 2022

Genome and transcriptome mechanisms driving cephalopod evolution.
Posted Tue May 10 04:31:15 2022

SLIDR and SLOPPR: Flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data
Posted Mon May 2 06:59:14 2022

The caspase family in urochordates: distinct evolutionary fates in ascidians and larvaceans.
Posted Thu Apr 28 00:56:00 2022

Chromosome evolution and the genetic basis of agronomically important traits in greater yam.
Posted Fri Apr 22 07:59:54 2022

Metazoans and Intrinsic Apoptosis: An Evolutionary Analysis of the Bcl-2 Family.
Posted Thu Apr 21 02:49:34 2022

Parameters for accurate genome alignment.
Posted Fri Apr 15 06:25:28 2022

Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes.
Posted Mon Apr 11 04:56:31 2022

Changes in appendicularian Oikopleura dioica abundance caused by invasion of alien ctenophores in the Black Sea
Posted Mon Apr 4 06:19:55 2022

Altered miRNA repertoire in the simplified chordate, Oikopleura dioica.
Posted Fri Mar 18 04:48:09 2022

Causes and Effects of Loss of Classical Nonhomologous End Joining Pathway in Parasitic Eukaryotes.
Posted Mon Mar 14 05:40:13 2022

Influence of body mass, food concentration, temperature and filtering activity on the oxygen uptake of the appendicularian Oikopleura dioica
Posted Thu Mar 10 04:55:22 2022

Improved DNA-versus-Protein Homology Search for Protein Fossils
Posted Tue Mar 8 08:09:42 2022

Transcriptional neighborhoods regulate transcript isoform lengths and expression levels.
Posted Mon Mar 7 04:48:04 2022

Evolution of CDK1 Paralog Specializations in a Lineage With Fast Developing Planktonic Embryos.
Posted Mon Feb 21 04:33:33 2022

Minimally-overlapping words for sequence similarity search.
Posted Fri Feb 18 08:35:57 2022

CNEr: A toolkit for exploring extreme noncoding conservation.
Posted Fri Feb 4 08:57:49 2022

Comprehensive determination of transcription start sites derived from all RNA polymerases using ReCappable-seq.
Posted Fri Feb 4 08:57:49 2022

Deeply conserved synteny and the evolution of metazoan chromosomes.
Posted Fri Feb 4 08:57:49 2022

Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes.
Posted Wed Jan 12 04:40:37 2022

AnchorWave: Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication.
Posted Thu Jan 6 04:10:09 2022

Germline development during embryogenesis of the larvacean, Oikopleura dioica.
Posted Wed Jan 5 04:58:51 2022

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.
Posted Tue Jan 4 08:28:20 2022

A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi.
Posted Mon Dec 27 04:21:18 2021

Comparative study on synteny between yeasts and vertebrates.
Posted Mon Dec 27 02:51:09 2021

Characteristic folding pattern of polytene chromosomes in Drosophila salivary gland nuclei.
Posted Wed Dec 22 04:18:51 2021

The transposon Galileo generates natural chromosomal inversions in Drosophila by ectopic recombination.
Posted Fri Dec 17 04:11:22 2021

Structural diversity and African origin of the 17q21.31 inversion polymorphism.
Posted Mon Dec 6 10:23:17 2021

The distribution and most recent common ancestor of the 17q21 inversion in humans.
Posted Mon Dec 6 09:11:59 2021

A common inversion under selection in Europeans.
Posted Mon Dec 6 04:45:13 2021

Contributions to the Genetics, Taxonomy, and Ecology of Drosophila pseudoobscura and its relatives
Posted Sun Dec 5 06:14:27 2021

Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis.
Posted Sat Dec 4 23:09:45 2021

Morphological differences between two sibling species; Drosophila pseudoobscura and Drosophila persimilis
Posted Sat Dec 4 06:39:28 2021

Inversions in the Chromosomes of Drosophila Pseudoobscura.
Posted Sat Dec 4 05:45:36 2021

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes.
Posted Mon Nov 22 09:08:47 2021

Asymmetric Fitness of Second-Generation Interspecific Hybrids Between _Ciona robusta_ and _Ciona intestinalis_.
Posted Mon Nov 22 04:03:34 2021

Cardiopharyngeal deconstruction and ancestral tunicate sessility.
Posted Fri Nov 19 01:42:10 2021

DNA repair inhibition leads to active export of repetitive sequences to the cytoplasm triggering an inflammatory response.
Posted Thu Nov 11 04:31:01 2021

Prevalence of small inversions in yeast gene order evolution
Posted Thu Nov 4 04:38:56 2021

Distribution of Oikopleura (Vexillaria) Dioica Fol, 1872 (Class: Appendicularia) in the southern Black sea in 2006-2007
Posted Thu Nov 4 04:38:56 2021

Three genomes in the algal genus Volvox reveal the fate of a haploid sex-determining region after a transition to homothallism
Posted Mon Nov 1 07:04:21 2021

Direct observation of independently moving replisomes in Escherichia coli.
Posted Fri Oct 22 07:35:20 2021

The role of beak shape in octopodid taxonomy
Posted Mon Oct 18 04:11:05 2021

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
Posted Fri Oct 15 03:45:40 2021

capCLIP: a new tool to probe translational control in human cells through capture and identification of the eIF4E-mRNA interactome.
Posted Thu Oct 14 07:39:01 2021

Multiplexed direct detection of barcoded protein reporters on a nanopore array
Posted Wed Oct 13 23:49:48 2021

Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics
Posted Wed Oct 13 23:43:30 2021

Protein phosphatase 2A is essential to maintain meiotic arrest, and to prevent Ca2+ burst at spawning and eventual parthenogenesis in the larvacean Oikopleura dioica.
Posted Fri Oct 1 04:35:25 2021

Genomic structural variants constrain and facilitate adaptation in natural populations of Theobroma cacao, the chocolate tree.
Posted Tue Sep 21 03:51:45 2021

DNA repeats lead to the accelerated loss of gene order in bacteria.
Posted Wed Sep 8 09:11:14 2021

Unusual composition of a yeast chromosome arm is associated with its delayed replication.
Posted Wed Sep 8 07:10:32 2021

Temperature dependence of spontaneous mutation rates.
Posted Wed Sep 8 03:07:13 2021

Exosome-mediated horizontal gene transfer occurs in double-strand break repair during genome editing.
Posted Wed Sep 8 02:46:28 2021

Appendicularians
Posted Wed Sep 8 01:08:41 2021

Arrhenius equation for developmental processes.
Posted Wed Sep 8 01:08:41 2021

Ultrarapid detection of SARS-CoV-2 RNA using a reverse transcription-free exponential amplification reaction, RTF-EXPAR.
Posted Tue Aug 31 19:41:32 2021

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
Posted Wed Aug 25 00:07:43 2021

Phylogenetic Analyses of Glycosyl Hydrolase Family 6 Genes in Tunicates: Possible Horizontal Transfer.
Posted Fri Aug 20 11:45:14 2021

Caenorhabditis elegans DSB-3 reveals conservation and divergence among protein complexes promoting meiotic double-strand breaks.
Posted Wed Aug 18 00:58:32 2021

3D genomics across the tree of life reveals condensin II as a determinant of architecture type.
Posted Sat Aug 14 04:29:25 2021

DNA double-strand breaks induced by high NaCl occur predominantly in gene deserts.
Posted Thu Aug 12 22:25:21 2021

The saltiness of the sea breaks DNA in marine invertebrates: possible implications for animal evolution.
Posted Tue Aug 10 23:56:31 2021

Complete Genome Sequence of Vibrio campbellii LMB 29 Isolated from Red Drum with Four Native Megaplasmids.
Posted Thu Jul 22 08:20:11 2021

Modular Evolution and Population Variability of Oikopleura dioica Metallothioneins.
Posted Wed Jul 21 13:53:27 2021

Abandoned larvacean houses: a unique food source in the pelagic environment
Posted Fri Jul 16 04:18:07 2021

Locally adaptive inversions modulate genetic variation at different geographic scales in a seaweed fly
Posted Fri Jul 16 04:18:07 2021

Giant lungfish genome elucidates the conquest of land by vertebrates.
Posted Wed Jul 7 04:06:04 2021

Spo11 generates gaps through concerted cuts at sites of topological stress.
Posted Fri Jul 2 04:23:47 2021

Tunicates illuminate the enigmatic evolution of chordate metallothioneins by gene gains and losses, independent modular expansions and functional convergences.
Posted Thu Jul 1 04:37:12 2021

Massive Gene Loss and Function Shuffling in Appendicularians Stretch the Boundaries of Chordate Wnt Family Evolution.
Posted Thu Jul 1 04:18:10 2021

Concerted cutting by Spo11 illuminates meiotic DNA break mechanics.
Posted Mon Jun 28 05:58:55 2021

Diet of anguilloid larvae: leptocephali feed selectively on larvacean houses and fecal pellets.
Posted Mon Jun 28 05:48:06 2021

The Beginning of the End: A Chromosomal Assembly of the New World Malaria Mosquito Ends with a Novel Telomere. G3 (Bethesda).
Posted Mon Jun 21 04:50:19 2021

Accurate genomic variant detection in single cells with primary template-directed amplification.
Posted Fri Jun 18 11:29:39 2021

Role of intraspecific competition in intrinsic growth rate regulation in an Oikopleura dioica (Tunicata) population
Posted Fri Jun 18 08:50:50 2021

An integrative taxonomic framework for the study of the genus Ciona (Ascidiacea) and description of a new species, Ciona intermedia
Posted Fri Jun 18 01:24:20 2021

Chromosomal Inversion Polymorphisms in Two Sympatric Ascidian Lineages.
Posted Thu Jun 17 12:32:31 2021

Long-read sequencing of 3,622 Icelanders provides insight into the role of structural variants in human diseases and other traits.
Posted Mon Jun 14 07:22:09 2021

Nkx2-1 and FoxE regionalize glandular (mucus-producing) and thyroid-equivalent traits in the endostyle of the chordate Oikopleura dioica.
Posted Fri Jun 11 04:00:09 2021

Improved search heuristics find 20,000 new alignments between human and mouse genomes.
Posted Mon Jun 7 05:49:48 2021

A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning.
Posted Fri Jun 4 04:57:53 2021

The filter-house of the larvacean Oikopleura dioica. A complex extracellular architecture: from fiber production to rudimentary state to inflated house.
Posted Tue Jun 1 04:26:40 2021

How fast is the sessile ciona?
Posted Mon May 31 04:54:11 2021

Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum.
Posted Tue May 25 04:36:38 2021

Genetic and spatial organization of the unusual chromosomes of the dinoflagellate Symbiodinium microadriaticum.
Posted Tue May 18 04:33:48 2021

Analysis of muntjac deer genome and chromatin architecture reveals rapid karyotype evolution.
Posted Mon May 17 05:10:27 2021

Toward a global reference database of COI barcodes for marine zooplankton.
Posted Thu May 6 04:02:39 2021

Establishing Sustainable Cell Lines of a Coral, Acropora tenuis.
Posted Tue Apr 27 04:47:00 2021

Evolution of genes and genomes on the Drosophila phylogeny.
Posted Mon Apr 26 04:47:26 2021

A Nuclear mtDNA Concatemer (Mega-NUMT) Could Mimic Paternal Inheritance of Mitochondrial Genome.
Posted Fri Apr 23 04:35:19 2021

A supernumerary designer chromosome for modular in vivo pathway assembly in Saccharomyces cerevisiae.
Posted Thu Apr 22 04:41:23 2021

Comparative evolutionary analysis of rDNA ITS regions in Drosophila.
Posted Tue Apr 20 04:56:27 2021

Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing.
Posted Tue Apr 20 00:58:40 2021

Compensatory base changes in ITS2 secondary structures correlate with the biological species concept despite intragenomic variability in ITS2 sequences–a proof of concept.
Posted Mon Apr 19 05:18:30 2021

New apparatuses for cultivation of appendicularians.
Posted Mon Apr 19 00:59:48 2021

A new appendicularian, Oikopleura gorskyi n. sp. (Tunicata), from norwegian fjords
Posted Fri Apr 16 06:05:22 2021

The structure, function and evolution of a complete human chromosome 8.
Posted Fri Apr 16 06:05:22 2021

The use of melting curves as a novel approach for validation of real-time PCR instruments.
Posted Tue Apr 13 04:06:28 2021

3D reconstruction of structures of hatched larva and young juvenile of the larvacean Oikopleura dioica using SBF-SEM.
Posted Thu Mar 4 04:40:09 2021

Evolution of genome structure in the Drosophila simulans species complex.
Posted Tue Mar 2 04:36:03 2021

eDNAFlow, an automated, reproducible and scalable workflow for analysis of environmental DNA (eDNA) sequences exploiting Nextflow and Singularity
Posted Thu Feb 25 04:06:08 2021

Jointly aligning a group of DNA reads improves accuracy of identifying large deletions.
Posted Wed Feb 24 07:09:47 2021

Bandage: interactive visualization of de novo genome assemblies.
Posted Wed Feb 24 06:16:08 2021

A short ORF-encoded transcriptional regulator.
Posted Mon Feb 22 05:18:53 2021

The First Ultrastructural Description of Appendicularians (Chordata: Tunicata) Infected by Microsporidia-Like Protists
Posted Fri Feb 19 05:22:48 2021

Alimentary tract of kowalevskiidae (appendicularia, tunicata) and evolutionary implications
Posted Fri Feb 19 05:09:28 2021

Simple and efficient measurement of transcription initiation and transcript levels with STRIPE-seq
Posted Tue Feb 16 03:59:36 2021

Fossil appendicularians in the early cambrian
Posted Tue Feb 9 03:39:38 2021

Identifying and removing haplotypic duplication in primary genome assemblies.
Posted Thu Feb 4 04:17:56 2021

A novel measure of non-coding genome conservation identifies genomic regulatory blocks within primates.
Posted Wed Jan 20 03:47:22 2021

On the evolutionary origin of eukaryotic DNA methyltransferases and Dnmt2.
Posted Mon Jan 18 13:29:13 2021

DNA methylation in amphioxus: from ancestral functions to new roles in vertebrates.
Posted Mon Jan 18 13:14:27 2021

Platypus and echidna genomes reveal mammalian biology and evolution.
Posted Fri Jan 8 04:44:54 2021

Phylogenetic analysis of phenotypic characters of Tunicata supports basal Appendicularia and monophyletic Ascidiacea
Posted Thu Jan 7 05:45:31 2021

Exon 3 of the NUMB Gene Emerged in the Chordate Lineage Coopting the NUMB Protein to the Regulation of MDM2.
Posted Thu Jan 7 04:20:12 2021

True scale-free networks hidden by finite size effects.
Posted Thu Jan 7 04:20:12 2021

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species.
Posted Mon Dec 28 07:25:08 2020

A remote-controlled adaptive medchem lab: an innovative approach to enable drug discovery in the 21st Century.
Posted Fri Dec 18 04:53:00 2020

Organic synthesis in a modular robotic system driven by a chemical programming language.
Posted Tue Dec 15 05:13:31 2020

A robotic platform for flow synthesis of organic compounds informed by AI planning.
Posted Mon Dec 14 04:42:22 2020

Automated design of thousands of nonrepetitive parts for engineering stable genetic systems.
Posted Mon Dec 14 04:42:22 2020

Computational planning of the synthesis of complex natural products.
Posted Tue Dec 8 08:42:22 2020

A specific combination of dual index adaptors decreases the sensitivity of amplicon sequencing with the Illumina platform.
Posted Fri Dec 4 04:13:13 2020

Reconstruction of the ancestral metazoan genome reveals an increase in genomic novelty.
Posted Thu Nov 26 04:12:22 2020

Dense and pleiotropic regulatory information in a developmental enhancer.
Posted Wed Nov 25 04:27:47 2020

Universal robotic gripper based on the jamming of granular material
Posted Mon Nov 16 10:48:54 2020

Selective Suppression of Polymerase Chain Reaction and Its Most Popular Applications.
Posted Fri Nov 6 04:24:46 2020

Use of Cap Analysis Gene Expression to detect human papillomavirus promoter activity patterns at different disease stages.
Posted Mon Nov 2 03:50:39 2020

The eukaryotic translation initiation factor eIF4E elevates steady-state m7G capping of coding and noncoding transcripts.
Posted Thu Oct 29 03:46:28 2020

Dynamic evolution of great ape Y chromosomes.
Posted Tue Oct 27 05:07:47 2020

Conservative route to genome compaction in a miniature annelid
Posted Mon Oct 26 07:29:50 2020

Oikopleura.
Posted Fri Oct 23 03:57:10 2020

Liquid drop of DNA libraries reveals total genome information.
Posted Fri Oct 23 01:38:23 2020

Conformation of sister chromatids in the replicated human genome.
Posted Tue Oct 20 04:43:01 2020

Characterization and engineering of a two-enzyme system for plastics depolymerization.
Posted Tue Oct 20 04:43:01 2020

Eighteen coral genomes reveal the evolutionary origin of Acropora strategies to accommodate environmental changes.
Posted Tue Oct 20 04:31:18 2020

The origin and diversification of pteropods precede past perturbations in the Earth's carbon cycle.
Posted Tue Oct 13 04:04:48 2020

Relatives of rubella virus in diverse mammals.
Posted Mon Oct 12 04:06:41 2020

Clinical characteristics of jellyfish stings in Japan.
Posted Wed Oct 7 09:54:00 2020

Evolutionary history of free-swimming and sessile lifestyles in urochordates as deduced from 18S rDNA molecular phylogeny.
Posted Wed Oct 7 09:54:00 2020

Scallop genome provides insights into evolution of bilaterian karyotype and development.
Posted Fri Oct 2 02:30:56 2020

Biosynthesis of medicinal tropane alkaloids in yeast.
Posted Thu Oct 1 04:43:42 2020

Reconstruction of the birth of a male sex chromosome present in Atlantic herring.
Posted Tue Sep 29 23:44:59 2020

How malleable is the eukaryotic genome? Extreme rate of chromosomal rearrangement in the genus Drosophila.
Posted Tue Sep 29 06:11:25 2020

Evolution of a large, conserved, and syntenic gene family in insects.
Posted Fri Sep 25 04:40:26 2020

Productivity and grazing impact of Oikopleura dioica (Tunicata, Appendicularia) in Tokyo Bay
Posted Wed Sep 23 10:09:11 2020

Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition.
Posted Tue Sep 22 20:00:37 2020

Nucleolar RNA polymerase II drives ribosome biogenesis.
Posted Sat Sep 19 04:32:38 2020

Inferring Tunicate Relationships and the Evolution of the Tunicate Hox Cluster with the Genome of Corella inflata.
Posted Thu Sep 17 08:48:55 2020

Phylogenomics offers resolution of major tunicate relationships.
Posted Thu Sep 17 08:33:05 2020

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.
Posted Thu Sep 17 00:35:32 2020

Highly active rubiscos discovered by systematic interrogation of natural sequence diversity.
Posted Wed Sep 16 23:43:51 2020

Rapid isothermal amplification and portable detection system for SARS-CoV-2.
Posted Wed Sep 16 03:48:57 2020

Changing Infrastructural Practices: Routine and Reproducibility in Automated Interdisciplinary Bioscience.
Posted Tue Sep 15 04:43:46 2020

Vianna JA, Fernandes FAN, Frugone MJ, Figueiró HV, Pertierra LR, Noll D, Bi K, Wang-Claypool CY, Lowther A, Parker P, Le Bohec C, Bonadonna F, Wienecke B, Pistorius P, Steinfurth A, Burridge CP, Dantas GPM, Poulin E, Simison WB, Henderson J, Eizirik E, Nery MF, Bowie RCK.
Posted Mon Sep 14 04:50:57 2020

Patterning through differential endoreduplication in epithelial organogenesis of the chordate, Oikopleura dioica.
Posted Fri Sep 11 04:32:03 2020

High throughput, error corrected Nanopore single cell transcriptome sequencing
Posted Thu Sep 10 05:50:15 2020

Quantitative analysis of centromeric FISH spots during the cell cycle by image cytometry.
Posted Wed Sep 9 00:26:18 2020

Deeply conserved synteny resolves early events in vertebrate evolution.
Posted Tue Sep 8 05:06:17 2020

SBML Level 3: an extensible format for the exchange and reuse of biological models.
Posted Mon Sep 7 04:00:14 2020

Accurate identification of centromere locations in yeast genomes using Hi-C.
Posted Fri Sep 4 04:34:12 2020

Sc3.0: revamping and minimizing the yeast genome
Posted Thu Sep 3 04:13:42 2020

Spliced leader RNAs from lower eukaryotes are trans-spliced in mammalian cells.
Posted Wed Sep 2 06:05:11 2020

Increased Mutation Rate Is Linked to Genome Reduction in Prokaryotes.
Posted Tue Aug 11 04:21:21 2020

An artificial aquatic polyp that wirelessly attracts, grasps, and releases objects.
Posted Fri Aug 7 03:59:35 2020

ZipSeq: barcoding for real-time mapping of single cell transcriptomes.
Posted Thu Aug 6 04:20:30 2020

Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes.
Posted Thu Aug 6 04:17:14 2020

Assembly of the threespine stickleback Y chromosome reveals convergent signatures of sex chromosome evolution
Posted Tue Aug 4 04:35:55 2020

Telomere-to-telomere assembly of a complete human X chromosome.
Posted Fri Jul 31 04:28:45 2020

A Y-like social chromosome causes alternative colony organization in fire ants.
Posted Wed Jul 29 06:21:49 2020

A new strategy to amplify degraded RNA from small tissue samples for microarray studies.
Posted Tue Jul 21 04:21:45 2020

A genome database for a Japanese population of the larvacean Oikopleura dioica.
Posted Tue Jul 21 04:03:31 2020

Single cell reverse transcription-polymerase chain reaction analysis of rat supraoptic magnocellular neurons: neuropeptide phenotypes and high voltage-gated calcium channel subtypes.
Posted Mon Jul 20 04:00:15 2020

Ocean currents promote rare species diversity in protists
Posted Mon Jul 20 03:55:16 2020

Posted Thu Jul 16 04:01:36 2020

Embryonic tissue differentiation is characterized by transitions in cell cycle dynamic- associated core promoter regulation.
Posted Mon Jul 13 05:12:26 2020

Insights into variation in meiosis from 31,228 human sperm genomes.
Posted Fri Jul 10 06:43:10 2020

Analysis of gene expression in single live neurons.
Posted Fri Jul 10 04:21:52 2020

A mobile robotic chemist.
Posted Fri Jul 10 04:21:52 2020

Streamlined Sampling and Cultivation of the Pelagic Cosmopolitan Larvacean, Oikopleura dioica.
Posted Wed Jul 8 06:54:46 2020

Primer Extension Enrichment Reaction (PEER): A New Subtraction Method for Identification of Genetic Differences Between Biological Specimens
Posted Mon Jul 6 05:00:49 2020

Chromosome-Level Assembly of _Drosophila bifasciata_ Reveals Important Karyotypic Transition of the X Chromosome.
Posted Mon Jul 6 05:00:49 2020

The amphioxus genome and the evolution of the chordate karyotype.
Posted Fri Jul 3 04:24:14 2020

Olf-1-binding Site: Characterization of an Olfactory Neuron-Specific Promoter Motif
Posted Fri Jul 3 04:24:14 2020

The 3D organization of chromatin explains evolutionary fragile genomic regions.
Posted Tue Jun 30 04:40:47 2020

Chromosome evolution at the origin of the ancestral vertebrate genome.
Posted Mon Jun 29 05:15:43 2020

Zooplankton growth rates: extraordinary production by the larvacean Oikopleura dioica in tropical waters
Posted Fri Jun 26 04:43:26 2020

Elimination of rNMPs from mitochondrial DNA has no effect on its stability.
Posted Thu Jun 25 03:50:22 2020

Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics.
Posted Wed Jun 24 06:30:19 2020

An open-source drug discovery platform enables ultra-large virtual screens.
Posted Tue Jun 23 04:23:35 2020

Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica.
Posted Fri Jun 19 04:09:57 2020

Massively multiplexed nucleic acid detection with Cas13.
Posted Fri Jun 19 04:09:57 2020

Unbiased screen of RNA tailing activities reveals a poly(UG) polymerase.
Posted Wed Jun 17 02:43:05 2020

Common homozygosity for predicted loss-of-function variants reveals both redundant and advantageous effects of dispensable human genes.
Posted Wed Jun 17 02:09:47 2020

An aphid RNA transcript migrates systemically within plants and is a virulence factor
Posted Wed Jun 10 04:02:34 2020

Phenotypic Diversification by Enhanced Genome Restructuring After Induction of Multiple DNA Double-Strand Breaks
Posted Tue Jun 9 04:22:17 2020

Revealing Enigmatic Mucus Structures in the Deep Sea Using DeepPIV
Posted Mon Jun 8 04:28:27 2020

Polymorphic Centromere Locations in the Pathogenic Yeast Candida parapsilosis
Posted Fri May 29 05:42:13 2020

Metallothioneins of the urochordate Oikopleura dioica have Cys-rich tandem repeats, large size and cadmium-binding preference.
Posted Mon May 11 07:08:24 2020

Cell lines derived from late embryonic stages of Drosophila melanogaster.
Posted Mon May 11 07:08:24 2020

Diffusion Tubes: A Method for the Mass Culture of Ctenophores and Other Pelagic Marine Invertebrates
Posted Sun Apr 19 09:09:05 2020

Shedding light on the expansion and diversification of the Cdc48 protein family during the rise of the eukaryotic cell.
Posted Wed Apr 15 22:22:38 2020

The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion.
Posted Tue Apr 14 21:03:40 2020

Evolutionary loss of peroxisomes--not limited to parasites.
Posted Tue Apr 14 09:02:48 2020

Nouvelle technique d'élevage des appendiculaires
Posted Mon Apr 13 03:44:01 2020

The cultivation of an appendicularian through numerous generations.
Posted Sun Apr 12 09:10:37 2020

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita.
Posted Sun Apr 12 07:29:49 2020

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds.
Posted Sun Apr 12 07:29:49 2020

What is rarity?
Posted Sun Apr 12 05:30:16 2020

An electron microscopic study of early gonadogenesis in the hermaphroditic appendicularian Oikopleura gracilis (Tunicata, Oikopleuridae)
Posted Sun Apr 12 05:30:16 2020

Transforming activity of an oncoprotein-encoding circular RNA from human papillomavirus.
Posted Sun Apr 12 05:30:16 2020

The Scaly-foot Snail genome and implications for the origins of biomineralised armour.
Posted Sun Apr 12 05:30:16 2020

A cnidarian parasite of salmon (Myxozoa: Henneguya) lacks a mitochondrial genome.
Posted Tue Apr 7 04:42:00 2020

The intelligent knife (iKnife) and its intraoperative diagnostic advantage for the treatment of cervical disease.
Posted Wed Apr 1 09:43:14 2020

Embryonic expression of endogenous retroviral RNAs in somatic tissues adjacent to the Oikopleura germline.
Posted Mon Mar 30 06:20:53 2020

One-step detection of the 2009 pandemic influenza A(H1N1) virus by the RT-SmartAmp assay and its clinical validation.
Posted Fri Mar 27 05:05:19 2020

Evolution of the mitochondrial genetic code. II. Reassignment of codon AUA from isoleucine to methionine.
Posted Fri Mar 27 03:03:58 2020

Environmental DNA reveals seasonal shifts and potential interactions in a marine community.
Posted Wed Mar 25 07:16:36 2020

Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events.
Posted Tue Mar 24 08:31:57 2020

The prehistory of biology preprints: A forgotten experiment from the 1960s.
Posted Thu Mar 19 06:14:39 2020

Codon - Anticodon Pairing The Wobble Hypothesis
Posted Thu Mar 19 06:14:39 2020

Retroelement dynamics and a novel type of chordate retrovirus-like element in the miniature genome of the tunicate Oikopleura dioica.
Posted Tue Mar 17 03:13:36 2020

MAPCap allows high-resolution detection and differential expression analysis of transcription start sites.
Posted Fri Mar 13 08:47:17 2020

Mitogenomics Reveals a Novel Genetic Code in Hemichordata.
Posted Wed Mar 11 09:35:17 2020

Unusual genetic codes and a novel gene structure for tRNA(AGYSer) in starfish mitochondrial DNA.
Posted Wed Mar 11 05:50:55 2020

Gene expression and cell identity controlled by anaphase-promoting complex.
Posted Wed Mar 11 04:15:41 2020

Genomic evidence for two phylogenetic species and long-term population bottlenecks in red pandas.
Posted Wed Mar 11 03:56:21 2020

Widespread use of the “ascidian” mitochondrial genetic code in tunicates.
Posted Wed Mar 11 03:10:21 2020

Long-range single-molecule mapping of chromatin accessibility in eukaryotes.
Posted Fri Mar 6 04:02:50 2020

HELLS and PRDM9 form a pioneer complex to open chromatin at meiotic recombination hot spots.
Posted Thu Mar 5 09:24:23 2020

The X chromosome of the German cockroach, Blattella germanica, is homologous to a fly X chromosome despite 400 million years divergence.
Posted Tue Mar 3 03:20:59 2020

Dinucleoside polyphosphates act as 5'-RNA caps in bacteria.
Posted Mon Mar 2 07:08:55 2020

ORTHOSCOPE Analysis Reveals the Presence of the Cellulose Synthase Gene in All Tunicate Genomes but Not in Other Animal Genomes.
Posted Mon Mar 2 05:49:58 2020

ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates.
Posted Fri Feb 28 04:28:54 2020

A chordate species lacking Nodal utilizes calcium oscillation and Bmp for left-right patterning.
Posted Fri Feb 28 04:28:54 2020

Animal, Fungi, and Plant Genome Sequences Harbor Different Non-Canonical Splice Sites.
Posted Tue Feb 25 01:27:10 2020

Extension of mismatched 3' termini of DNA is a major determinant of the infidelity of human immunodeficiency virus type 1 reverse transcriptase.
Posted Fri Feb 21 04:31:18 2020

Fidelity of in vitro DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase.
Posted Fri Feb 21 04:17:45 2020

Template-switching mechanism of a group II intron-encoded reverse transcriptase and its implications for biological function and RNA-Seq.
Posted Fri Feb 21 01:23:24 2020

Mechanism of DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase.
Posted Thu Feb 20 07:16:34 2020

Loss of centromere function drives karyotype evolution in closely related Malassezia species.
Posted Wed Feb 19 04:33:08 2020

Details of the evolutionary history from invertebrates to vertebrates, as deduced from the sequences of 18S rDNA.
Posted Tue Feb 18 02:38:05 2020

Transcription of the 5'-terminal cap nucleotide by RNA-dependent DNA polymerase: possible involvement in retroviral reverse transcription.
Posted Mon Feb 17 04:47:57 2020

Seasonal and spatial variability of appendicularian density and taxonomic composition in the Caravelas Estuary (Northeastern Brazil) and adjacent coastal area
Posted Mon Feb 17 03:54:43 2020

Sites of bioluminescence in the appendicularians Oikopleura dioica and O. labradoriensis (Urochordata: Larvacea).
Posted Mon Feb 17 03:36:55 2020

Generation and use of high-quality cDNA from small amounts of total RNA by SMART PCR.
Posted Fri Feb 14 03:53:06 2020

RNA sequencing by direct tagmentation of RNA/DNA hybrids.
Posted Wed Feb 12 02:19:52 2020

Simple and inexpensive three-step rapid amplification of cDNA 5' ends using 5' phosphorylated primers.
Posted Mon Feb 10 04:51:56 2020

Determination of the site of first strand transfer during Moloney murine leukemia virus reverse transcription and identification of strand transfer-associated reverse transcriptase errors.
Posted Mon Feb 10 04:51:56 2020

Generation and characterization of new highly thermostable and processive M-MuLV reverse transcriptase variants.
Posted Mon Feb 10 01:43:14 2020

Machine-driven parameter screen of biochemical reactions.
Posted Mon Feb 10 00:59:01 2020

Molecular cytogenetic characterization of Ciona intestinalis chromosomes.
Posted Fri Feb 7 06:20:33 2020

D-GENIES: dot plot large genomes in an interactive, efficient and simple way.
Posted Thu Feb 6 06:56:00 2020

A High-Quality De Novo Genome Assembly from a Single Mosquito using PacBio Sequencing
Posted Tue Feb 4 06:16:40 2020

Definitive demonstration by synthesis of genome annotation completeness.
Posted Tue Feb 4 06:16:40 2020

Temperature-dependent template switching during in vitro cDNA synthesis by the AMV-reverse transcriptase.
Posted Mon Feb 3 08:01:28 2020

OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs.
Posted Thu Jan 30 05:26:03 2020

Characterization of Agrobacterium tumefaciens DNA ligases C and D.
Posted Wed Jan 29 09:18:09 2020

A scalable pipeline for designing reconfigurable organisms.
Posted Wed Jan 29 07:33:31 2020

Isolement, en culture in vivo, de lignées cellulaires diploïdes de Drosophila melanogaster.
Posted Wed Jan 29 07:33:31 2020

De novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole-genome duplication.
Posted Tue Jan 28 06:13:59 2020

Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.
Posted Mon Jan 27 07:41:18 2020

5' RACE by tailing a general template-switching oligonucleotide.
Posted Mon Jan 27 04:45:00 2020

Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction.
Posted Mon Jan 27 04:09:43 2020

Functional specialization of chordate CDK1 paralogs during oogenic meiosis.
Posted Wed Jan 22 04:20:03 2020

Oocyte selection is concurrent with meiosis resumption in the coenocystic oogenesis of Oikopleura.
Posted Tue Jan 21 06:29:56 2020

Phosphorylation of serine 10 in histone H3, what for?
Posted Tue Jan 21 05:47:42 2020

DNA barcoding reveals that injected transgenes are predominantly processed by homologous recombination in mouse zygote.
Posted Sun Jan 19 15:59:26 2020

Rapid Oocyte Growth and Artificial Fertilization of the Larvaceans Oikopleura dioica and Oikopleura longicauda
Posted Fri Jan 17 07:17:16 2020

The Oikopleura coenocyst, a unique chordate germ cell permitting rapid, extensive modulation of oocyte production.
Posted Fri Jan 17 07:17:16 2020

Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing.
Posted Wed Jan 15 09:32:42 2020

Stable recombination hotspots in birds.
Posted Tue Jan 14 06:11:44 2020

Copolymerization of single-cell nucleic acids into balls of acrylamide gel.
Posted Tue Jan 14 06:11:44 2020

Novel approach reveals genomic landscapes of single-strand DNA breaks with nucleotide resolution in human cells.
Posted Thu Jan 9 05:04:24 2020

New bobtail squid (Sepiolidae: Sepiolinae) from the Ryukyu islands revealed by molecular and morphological analysis.
Posted Wed Jan 8 04:51:37 2020

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Posted Tue Jan 7 05:35:02 2020

Giant larvacean houses: observations from deep submersibles.
Posted Tue Jan 7 02:00:22 2020

First records of a giant pelagic tunicate, Bathochordaeus charon (Urochordata, Larvacea), from the eastern Pacific Ocean, with notes on its biology
Posted Tue Jan 7 02:00:22 2020

The genetic map of goldfish (Carassius auratus) provided insights to the divergent genome evolutions in the Cyprinidae family.
Posted Thu Dec 19 05:24:16 2019

Predicting Genes in Single Genomes with AUGUSTUS.
Posted Wed Dec 18 05:06:53 2019

A large close relative of C. elegans is slow-developing but not long-lived.
Posted Wed Dec 11 06:17:53 2019

BUSCO: Assessing Genome Assembly and Annotation Completeness.
Posted Wed Dec 11 06:01:09 2019

Dramatic evolution of body length due to postembryonic changes in cell size in a newly discovered close relative of Caenorhabditis elegans
Posted Tue Dec 10 04:30:12 2019

Biology and genome of a newly discovered sibling species of Caenorhabditis elegans
Posted Tue Dec 10 04:24:26 2019

Field studies reveal a close relative of C. elegans thrives in the fresh figs of Ficus septica and disperses on its Ceratosolen pollinating wasps.
Posted Thu Dec 5 23:37:10 2019

Genome Architecture and Evolution of a Unichromosomal Asexual Nematode.
Posted Thu Nov 28 10:47:26 2019

Muller “Elements” in Drosophila: How the Search for the Genetic Basis for Speciation Led to the Birth of Comparative Genomics.
Posted Thu Nov 28 10:47:26 2019

The genome of a subterrestrial nematode reveals adaptations to heat
Posted Thu Nov 28 05:56:52 2019

Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction.
Posted Thu Nov 28 05:26:28 2019

Genetic Factors Affecting the Strength of Linkage in Drosophila.
Posted Thu Nov 28 05:21:34 2019

Error-Speed Correlations in Biopolymer Synthesis.
Posted Mon Nov 25 06:08:25 2019

RaGOO: fast and accurate reference-guided scaffolding of draft genomes.
Posted Wed Nov 20 03:53:44 2019

Three-dimensional folding and functional organization principles of the Drosophila genome.
Posted Tue Nov 19 05:11:22 2019

Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early Drosophila melanogaster embryo.
Posted Tue Nov 19 05:04:10 2019

Inversion variants in human and primate genomes.
Posted Mon Nov 18 05:16:46 2019

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.
Posted Mon Nov 18 01:31:07 2019

A chromosome-level assembly of the Atlantic herring genome-detection of a supergene and other signals of selection.
Posted Sat Nov 16 09:18:45 2019

Quantifying the RNA cap epitranscriptome reveals novel caps in cellular and viral RNA.
Posted Fri Nov 15 01:22:47 2019

Urochordates are monophyletic within the deuterostomes.
Posted Thu Nov 14 07:49:24 2019

Fast machine-learning online optimization of ultra-cold-atom experiments.
Posted Thu Nov 14 04:48:55 2019

Evolution of spliceosomal snRNA genes in metazoan animals.
Posted Thu Nov 14 04:30:35 2019

Evolution of the U2 Spliceosome for Processing Numerous and Highly Diverse Non-canonical Introns in the Chordate Fritillaria borealis.
Posted Wed Nov 13 07:00:23 2019

Biodegradation of waste PET: A sustainable solution for dealing with plastic pollution.
Posted Fri Nov 8 04:21:51 2019

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects.
Posted Thu Nov 7 01:09:06 2019

FFPEcap-seq: a method for sequencing capped RNAs in formalin-fixed paraffin-embedded samples.
Posted Sat Nov 2 03:29:10 2019

Gibbon genome and the fast karyotype evolution of small apes.
Posted Thu Oct 31 04:46:21 2019

Epigenetic maintenance of topological domains in the highly rearranged gibbon genome.
Posted Thu Oct 31 02:07:46 2019

Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling.
Posted Wed Oct 30 10:01:22 2019

Molecular phylogeny and divergence times of drosophilid species.
Posted Tue Oct 29 05:27:21 2019

Relationships in the Drosophila obscura species group, inferred from mitochondrial cytochrome oxidase II sequences.
Posted Tue Oct 29 05:09:55 2019

Comprehensive single cell transcriptional profiling of a multicellular organism by combinatorial indexing
Posted Mon Oct 28 04:51:02 2019

Integrating Hi-C links with assembly graphs for chromosome-scale assembly
Posted Mon Oct 28 04:51:02 2019

Heritability of morphological and life history traits in a pelagic tunicate
Posted Mon Oct 28 04:46:07 2019

Chromothripsis and beyond: rapid genome evolution from complex chromosomal rearrangements
Posted Mon Oct 28 04:46:07 2019

Expansion of cyclin D and CDK1 paralogs in Oikopleura dioica, a chordate employing diverse cell cycle variants.
Posted Wed Oct 23 04:28:52 2019

Multiple horizontally acquired genes from fungal and prokaryotic donors encode cellulolytic enzymes in the bdelloid rotifer Adineta ricciae.
Posted Wed Oct 23 04:28:52 2019

Human papillomavirus 16 promotes microhomology-mediated end-joining.
Posted Wed Oct 23 04:28:52 2019

A nearly-complete genome of Ciona intestinalis type A (C. robusta) reveals the contribution of inversion to chromosomal evolution in the genus Ciona.
Posted Wed Oct 23 02:57:29 2019

FACIL: Fast and Accurate Genetic Code Inference and Logo.
Posted Fri Oct 11 05:26:14 2019

CoreTracker: accurate codon reassignment prediction, applied to mitochondrial genomes.
Posted Fri Oct 11 05:26:14 2019

Ultrasound imaging of gene expression in mammalian cells
Posted Thu Oct 10 04:48:32 2019

The classification of Antarctic appendicularians: the Oikopleura gaussica group
Posted Wed Oct 9 09:26:53 2019

A new genus of midwater appendicularian: Mesoikopleura with four species
Posted Tue Oct 8 05:02:35 2019

Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
Posted Mon Oct 7 04:37:14 2019

Imprinting sets the stage for speciation.
Posted Mon Oct 7 04:28:30 2019

Hungry codons promote frameshifting in human mitochondrial ribosomes.
Posted Mon Oct 7 02:50:20 2019

In situ observations of giant appendicularians in Monterey Bay
Posted Wed Oct 2 04:27:32 2019

The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.
Posted Wed Oct 2 04:11:36 2019

Gene duplications and the origins of vertebrate development.
Posted Wed Oct 2 04:03:02 2019

Yellow-stained oikopleurid appendicularians are caused by bacterial parasitism
Posted Tue Oct 1 04:32:07 2019

The Pop-gen Pipeline Platform: A Software Platform for Facilitating Population Genomic Analyses
Posted Tue Oct 1 04:16:55 2019

Acoustic reporter genes for noninvasive imaging of microorganisms in mammalian hosts.
Posted Tue Oct 1 04:16:55 2019

Pre- and peri-implantation Zika virus infection impairs fetal development by targeting trophectoderm cells.
Posted Mon Sep 30 08:18:17 2019

Taxonomic identification of appendicularians collected in the epipelagic waters off northern Chile (Tunicata, Appendicularia)
Posted Mon Sep 30 06:40:15 2019

Production of Oikopleura longicauda (Tunicata: Appendicularia) in Toyama Bay, southern Japan Sea
Posted Mon Sep 30 06:31:52 2019

Temporal and vertical distributions of three appendicularian species (Tunicata) in Conception Bay, Newfoundland
Posted Mon Sep 30 06:31:52 2019

Extreme Mitogenomic Variation in Natural Populations of Chaetognaths.
Posted Mon Sep 30 06:31:52 2019

Symbiotic organs shaped by distinct modes of genome evolution in cephalopods.
Posted Mon Sep 30 06:31:52 2019

House Production by Oikopleura dioica (Tunicata, Appendicularia) Under Laboratory Conditions
Posted Fri Sep 27 06:36:49 2019

Seasonal occurrence and vertical distribution of appendicularians in Toyama Bay, southern Japan Sea
Posted Fri Sep 27 06:36:49 2019

Simple procedure for sperm cryopreservation in the larvacean tunicate Oikopleura dioica.
Posted Fri Sep 27 06:12:07 2019

Chromosomal Rearrangements as Barriers to Genetic Homogenization between Archaic and Modern Humans.
Posted Fri Sep 27 04:11:05 2019

Genome architecture and stability in the Saccharomyces cerevisiae knockout collection.
Posted Fri Sep 27 04:02:06 2019

La couche öikoplastique de l'Appendiculaire Oïkopleura albicans (Leuckart) (Tunicata)
Posted Thu Sep 19 12:11:40 2019

Using data-compressors for statistical analysis of problems on homogeneity testing and classification
Posted Thu Sep 19 05:11:20 2019

Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment.
Posted Thu Sep 19 04:45:34 2019

Taxonomic correlates of bioluminescence among appendicularians (urochordata: larvacea)
Posted Fri Sep 13 03:38:08 2019

The vertical distribution and biological transport of marine microplastics across the epipelagic and mesopelagic water column.
Posted Thu Sep 12 04:59:22 2019

Giant larvacean houses: rapid carbon transport to the deep sea floor.
Posted Thu Sep 12 04:45:01 2019

Seasonal succession of zooplankton in coastal waters of the Argentine Sea (Southwest Atlantic Ocean): prevalence of classical or microbial food webs
Posted Wed Sep 11 04:35:42 2019

Production of tropical larvaceans in Kingston Harbour, Jamaica: are we ignoring an important secondary producer?
Posted Wed Sep 11 04:17:46 2019

Studies on the Zooplankton in Omura Bay―II Seasonal Occurrences of Rotatoria, Cladocera, Sagittoidea, Appendiculata and Benthos Larvae
Posted Wed Sep 11 01:00:11 2019

Inferring whole-genome histories in large population datasets.
Posted Tue Sep 10 05:31:37 2019

Transcriptional regulation of a horizontally transferred gene from bacterium to chordate.
Posted Mon Sep 9 08:08:26 2019

Tunic morphology and cellulosic components of pyrosomas, doliolids, and salps (thaliacea, urochordata).
Posted Thu Sep 5 05:36:15 2019

Cellulose production and the evolution of the sessile lifestyle in ascidians
Posted Thu Sep 5 05:17:37 2019

Blooms of tunicates Oikopleura spp. and Dolioletta gegenbauri in the Seto Inland Sea, Japan, during summer
Posted Mon Sep 2 05:05:14 2019

Highly efficient single-stranded DNA ligation technique improves low-input whole-genome bisulfite sequencing by post-bisulfite adaptor tagging.
Posted Mon Sep 2 05:00:13 2019

Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe.
Posted Mon Sep 2 04:58:01 2019

A new mesopelagic larvacean, Mesochordaeus erythrocephalus, sp. nov., from Monterey Bay, with a description of its filtering house
Posted Fri Aug 30 06:50:13 2019

The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria.
Posted Wed Aug 28 06:38:40 2019

A single-molecule sequencing assay for the comprehensive profiling of T4 DNA ligase fidelity and bias during DNA end-joining.
Posted Tue Aug 27 05:07:40 2019

Interannual patterns during spring and late summer of larvaceans and pteropods in the coastal Gulf of Alaska, and their relationship to pink salmon survival
Posted Wed Aug 21 01:13:57 2019

Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome.
Posted Tue Aug 20 05:30:15 2019

Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication.
Posted Fri Aug 16 04:02:48 2019

Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
Posted Thu Aug 15 04:54:16 2019

Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression.
Posted Wed Aug 14 05:30:49 2019

Continuous Meter-Scale Synthesis of Weavable Tunicate Cellulose/Carbon Nanotube Fibers for High-Performance Wearable Sensors.
Posted Wed Aug 14 01:05:23 2019

Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids.
Posted Fri Aug 2 09:54:15 2019

Embryology of a planktonic tunicate reveals traces of sessility.
Posted Mon Jul 22 04:39:45 2019

Gap junction-dependent coordination of intercellular calcium signalling in the developing appendicularian tunicate Oikopleura dioica.
Posted Fri Jul 19 04:02:44 2019

Distribution of pelagic tunicates in the western part of the Bay of Bengal
Posted Thu Jul 18 05:44:02 2019

Studies on the distribution of appendicularians and some thaliaceans of the North Pacific, with some morphological notes.
Posted Thu Jul 18 05:39:25 2019

Switching of INCENP paralogs controls transitions in mitotic chromosomal passenger complex functions.
Posted Thu Jul 18 05:05:53 2019

Fluorescent in situ hybridization to ascidian chromosomes.
Posted Tue Jul 16 04:23:50 2019

Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis.
Posted Tue Jul 16 04:23:50 2019

Lifespan extension in a semelparous chordate occurs via developmental growth arrest just prior to meiotic entry.
Posted Sun Jul 14 07:23:10 2019

Complete mtDNA of Ciona intestinalis reveals extensive gene rearrangement and the presence of an atp8 and an extra trnM gene in ascidians.
Posted Fri Jul 5 07:02:00 2019

Transcript mapping and genome annotation of ascidian mtDNA using EST data.
Posted Fri Jul 5 06:38:41 2019

Nucleotide sequence of cytochrome oxidase (subunit III) from the mitochondrion of the tunicate Pyura stolonifera: evidence that AGR encodes glycine.
Posted Fri Jul 5 04:35:24 2019

Host Control of Symbiont Natural Product Chemistry in Cryptic Populations of the Tunicate Lissoclinum patella
Posted Thu Jul 4 06:20:13 2019

Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny
Posted Thu Jul 4 06:04:14 2019

Complete nucleotide sequence of the mitochondrial genome of Doliolum nationalis with implications for evolution of urochordates.
Posted Thu Jul 4 05:57:56 2019

One tunic but more than one barcode: evolutionary insights from dynamic mitochondrial DNA in Salpa thompsoni (Tunicata: Salpida)
Posted Thu Jul 4 05:13:43 2019

UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota.
Posted Wed Jul 3 04:37:06 2019

The main features of the craniate mitochondrial DNA between the ND1 and the COI genes were established in the common ancestor with the lancelet.
Posted Tue Jul 2 07:31:49 2019

Complete sequence, gene arrangement, and genetic code of mitochondrial DNA of the cephalochordate Branchiostoma floridae (Amphioxus)
Posted Tue Jul 2 07:17:41 2019

Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates.
Posted Mon Jul 1 05:13:24 2019

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.
Posted Fri Jun 28 04:19:09 2019

Centromere evolution and CpG methylation during vertebrate speciation.
Posted Wed Jun 26 03:05:03 2019

Complete DNA sequence of the mitochondrial genome of the ascidian Halocynthia roretzi (Chordata, Urochordata).
Posted Mon Jun 24 23:42:59 2019

An extra tRNAGly(U*CU) found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine.
Posted Mon Jun 24 23:35:46 2019

Codon reassignment and amino acid composition in hemichordate mitochondria.
Posted Mon Jun 24 14:10:48 2019

Codons AGA and AGG are read as glycine in ascidian mitochondria.
Posted Thu Jun 20 05:16:35 2019

Mitochondrial genome of Ciona savignyi (Urochordata, Ascidiacea, Enterogona): comparison of gene arrangement and tRNA genes with Halocynthia roretzi mitochondrial genome.
Posted Wed Jun 19 05:20:32 2019

The mitochondrial genome of Phallusia mammillata and Phallusia fumigata (Tunicata, Ascidiacea): high genome plasticity at intra-genus level.
Posted Tue Jun 18 05:21:24 2019

Mechanisms of tRNA import into yeast mitochondria: an overview.
Posted Mon Jun 17 04:20:22 2019

Genomic Structural Variations Within Five Continental Populations of Drosophila melanogaster.
Posted Mon Jun 17 04:00:15 2019

High-resolution mapping of meiotic crossovers and non-crossovers in yeast.
Posted Fri Jun 14 05:26:50 2019

Distribution patterns of appendicularians and copepods and their relationship on the northwest continental shelf of South China Sea during summer
Posted Thu Jun 13 03:55:49 2019

Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment.
Posted Tue Jun 11 06:50:05 2019

Zooplankton assemblages as indicators of seasonal changes in water masses in the boundary waters between the East China Sea and the Taiwan Strait
Posted Tue Jun 11 02:30:01 2019

Mesozooplankton Distribution and Composition on the Northeastern Coast of Taiwan during Autumn: Effects of the Kuroshio Current and Hydrothermal Vents
Posted Mon Jun 10 03:27:31 2019

Distribution and abundance of pelagic tunicates in the North Yellow Sea
Posted Tue Jun 4 03:38:32 2019

Taxonomic Composition and Seasonal Distribution Changes of Pelagic Tunicates in the Waters Off Nuclear Power Plants in Northern Taiwan in Relation to Environmental Conditions
Posted Fri May 31 04:16:52 2019

Pelagic tunicates in the China Seas
Posted Fri May 31 04:01:11 2019

Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2A.Z-containing nucleosomes.
Posted Tue May 28 05:22:24 2019

Gut ultrastructure of the appendicularian Oikopleura dioica (Tunicata)
Posted Tue May 28 05:18:31 2019

Histone variant innovation in a rapidly evolving chordate lineage.
Posted Fri May 24 10:49:41 2019

Morphological evidence that the molecularly determined Ciona intestinalis type A and type B are different species: Ciona robusta and Ciona intestinalis.
Posted Thu May 23 12:23:34 2019

The Nonconcept of Species Diversity: A Critique and Alternative Parameters
Posted Thu May 23 08:09:44 2019

Cellulose in the house of the appendicularian Oikopleura rufescens.
Posted Thu May 23 06:25:35 2019

Histone H4 post-translational modifications in chordate mitotic and endoreduplicative cell cycles.
Posted Mon May 20 05:45:30 2019

Plasticity of histone modifications across the invertebrate to vertebrate transition: histone H3 lysine 4 trimethylation in heterochromatin.
Posted Fri May 17 05:31:04 2019

Conserved patterns of nuclear compartmentalization are not observed in the chordate Oikopleura.
Posted Fri May 17 05:31:04 2019

Absence of evidence is not evidence of absence: Nanopore sequencing and complete assembly of the European lobster (Homarus gammarus) mitogenome uncovers the missing nad2 and a new major gene cluster duplication.
Posted Wed May 15 08:04:33 2019

Assembly of a Complete Mitogenome of Chrysanthemum nankingense Using Oxford Nanopore Long Reads and the Diversity and Evolution of Asteraceae Mitogenomes.
Posted Tue May 14 04:57:11 2019

Two reads to rule them all: Nanopore long read-guided assembly of the iconic Christmas Island red crab, Gecarcoidea natalis (Pocock, 1888), mitochondrial genome and the challenges of AT-rich mitogenomes.
Posted Tue May 14 04:47:50 2019

The cytoskeleton organizes germ nuclei with divergent fates and asynchronous cycles in a common cytoplasm during oogenesis in the chordate Oikopleura.
Posted Mon May 13 07:38:34 2019

Archaeal RNA ligase is a homodimeric protein that catalyzes intramolecular ligation of single-stranded RNA and DNA.
Posted Mon May 13 07:10:44 2019

Phosphorylation of the histone H3.3 variant in mitosis and meiosis of the urochordate Oikopleura dioica.
Posted Fri May 10 03:47:44 2019

Histone gene complement, variant expression, and mRNA processing in a urochordate Oikopleura dioica that undergoes extensive polyploidization.
Posted Thu May 9 05:43:19 2019

Assembly of Long Error-Prone Reads Using Repeat Graphs
Posted Wed May 8 07:14:45 2019

High-throughput single-molecule optofluidic analysis.
Posted Wed May 8 04:32:44 2019

The evolutionary landscape of the Rab family in chordates.
Posted Tue May 7 04:31:31 2019

Developmental atlas of appendicularian Oikopleura dioica actins provides new insights into the evolution of the notochord and the cardio-paraxial muscle in chordates.
Posted Fri Apr 26 04:41:54 2019

Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway.
Posted Fri Apr 19 04:48:35 2019

Brachyury (T) expression in embryos of a larvacean urochordate, Oikopleura dioica, and the ancestral role of T.
Posted Mon Apr 15 05:18:39 2019

Fast and accurate de novo genome assembly from long uncorrected reads.
Posted Thu Apr 11 04:28:15 2019

Mapping and phasing of structural variation in patient genomes using nanopore sequencing.
Posted Wed Apr 10 04:33:34 2019

Predator-prey interactions between the larvacean Oikopleura dioica and bacterioplankton in enclosed water columns
Posted Tue Apr 9 05:45:01 2019

Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads.
Posted Mon Apr 8 03:57:09 2019

Morphological identity of a taxonomically unassigned cytochrome c oxidase subunit I sequence from stomach contents of juvenile chum salmon determined using polymerase chain reaction
Posted Thu Apr 4 08:35:19 2019

A survey of localized sequence rearrangements in human DNA.
Posted Thu Apr 4 04:52:26 2019

Ocean acidification effects on mesozooplankton community development: Results from a long-term mesocosm experiment.
Posted Wed Apr 3 07:19:09 2019

Morphology, ecology, and molecular biology of a new species of giant larvacean in the eastern North Pacific: Bathochordaeus mcnutti sp. nov.
Posted Thu Mar 28 12:53:17 2019

Studies on the house building epithelium of Oikopleurid appendicularia (Tunicata): Early differentiation and description of the adult pattern of oikoplast cells
Posted Thu Mar 28 03:23:36 2019

Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable Elements.
Posted Wed Mar 27 23:26:55 2019

Cloning of the human cDNA for the U1 RNA-associated 70K protein.
Posted Fri Mar 8 05:14:02 2019

Purifying mRNAs with a high-affinity eIF4E mutant identifies the short 3' poly(A) end phenotype.
Posted Fri Mar 8 04:58:12 2019

RNA captor: a tool for RNA characterization.
Posted Fri Mar 8 04:52:22 2019

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
Posted Fri Mar 8 04:27:54 2019

Scaffolding of long read assemblies using long range contact information.
Posted Fri Mar 1 04:32:45 2019

Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora.
Posted Tue Feb 26 04:55:34 2019

Characterization of spliced leader trans-splicing in a photosynthetic rhizarian amoeba, Paulinella micropora, and its possible role in functional gene transfer.
Posted Tue Feb 26 04:28:11 2019

The origin of Reissner's fibre in an appendicularian, Oikopleura dioica
Posted Mon Feb 25 04:43:54 2019

Evolutionary volatile Cysteines and protein disorder in the fast evolving tunicate Oikopleura dioica.
Posted Fri Feb 22 04:39:23 2019

Mitogenomics reveals two cryptic species in Ciona intestinalis.
Posted Thu Feb 21 05:15:32 2019

Crossing the species barrier: genomic hotspots of introgression between two highly divergent Ciona intestinalis species.
Posted Wed Feb 20 04:33:28 2019

Reissner’s Fiber Mechanisms: Some Common Denominators.
Posted Tue Feb 19 06:36:43 2019

SCO-spondin is evolutionarily conserved in the central nervous system of the chordate phylum.
Posted Tue Feb 19 06:36:43 2019

Distinguishing contemporary hybridization from past introgression with postgenomic ancestry-informative SNPs in strongly differentiated Ciona species.
Posted Mon Feb 18 04:49:00 2019

Cryptic speciation in a model invertebrate chordate.
Posted Mon Feb 18 04:29:57 2019

Polymorphism and divergence within the ascidian genus Ciona.
Posted Fri Feb 15 04:22:38 2019

Genealogical relationships within and among shallow-water Ciona species (Ascidiacea)
Posted Fri Feb 15 04:10:12 2019

Genomic approaches reveal unexpected genetic divergence within Ciona intestinalis.
Posted Thu Feb 14 05:19:16 2019

Coupling molecular data and experimental crosses sheds light about species delineation: a case study with the genus Ciona.
Posted Wed Feb 13 04:17:02 2019

Mechanism of the block to hybridization and selfing between the sympatric ascidians Ciona intestinalis and Ciona savignyi.
Posted Tue Feb 12 04:46:26 2019

Detection of splice isoforms and rare intermediates using multiplexed primer extension sequencing.
Posted Fri Feb 8 07:32:39 2019

Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species.
Posted Thu Feb 7 04:19:39 2019

Peculiar patterns of amino acid substitution and conservation in the fast evolving tunicate Oikopleura dioica.
Posted Wed Feb 6 07:30:46 2019

Evolutionary genomics of fast evolving tunicates.
Posted Wed Feb 6 07:22:30 2019

Comparative metatranscriptomics reveals decline of a neustonic planktonic population
Posted Mon Feb 4 04:25:11 2019

Ragout-a reference-assisted assembly tool for bacterial genomes.
Posted Fri Feb 1 00:58:53 2019

Chromosome assembly of large and complex genomes using multiple references.
Posted Fri Feb 1 00:49:57 2019

Species composition and horizontal distribution of the appendicularian community in waters adjacent to the Kuroshio in winter–early spring
Posted Thu Jan 31 07:27:10 2019

Seasonal variations in abundance, size composition, biomass and production rate of Oikopleura dioica (Fol) (Tunicata: Appendicularia) in a temperate eutrophic inlet
Posted Wed Jan 30 07:38:57 2019

A functional cellulose synthase from ascidian epidermis.
Posted Thu Jan 24 04:44:29 2019

mRNA 5'-leader trans-splicing in the chordates.
Posted Thu Jan 24 04:39:59 2019

The evolutionary origin of animal cellulose synthase.
Posted Thu Jan 24 04:33:45 2019

Maternal and zygotic transcriptomes in the appendicularian, Oikopleura dioica: novel protein-encoding genes, intra-species sequence variations, and trans-spliced RNA leader.
Posted Wed Jan 23 08:31:41 2019

Appendicularians (Urochordata)
Posted Tue Jan 22 04:46:49 2019

Indian muntjac, Muntiacus muntjak: a deer with a low diploid chromosome number.
Posted Wed Jan 16 08:31:19 2019

Carotenoid metabolic profiling and transcriptome-genome mining reveal functional equivalence among blue-pigmented copepods and appendicularia.
Posted Tue Jan 15 06:02:06 2019

MinIONQC: fast and simple quality control for MinION sequencing data.
Posted Fri Jan 11 06:20:28 2019

plyranges: a grammar of genomic data transformation.
Posted Thu Jan 10 04:54:23 2019

HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly.
Posted Thu Jan 10 04:37:48 2019

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.
Posted Mon Jan 7 04:54:21 2019

Remodelling of the homeobox gene complement in the tunicate Oikopleura dioica.
Posted Fri Dec 14 06:33:25 2018

NanoPARE: parallel analysis of RNA 5' ends from low-input RNA.
Posted Wed Dec 12 04:28:56 2018

Viruses on the menu: The appendicularian Oikopleura dioica efficiently removes viruses from seawater
Posted Tue Dec 11 03:55:28 2018

Mammoth grazers on the ocean's minuteness: a review of selective feeding using mucous meshes.
Posted Wed Dec 5 03:51:26 2018

From the surface to the seafloor: How giant larvaceans transport microplastics into the deep sea.
Posted Sun Dec 2 08:21:06 2018

New technology reveals the role of giant larvaceans in oceanic carbon cycling.
Posted Sun Dec 2 07:52:00 2018

Split-alignment of genomes finds orthologies more accurately.
Posted Thu Nov 29 10:02:25 2018

Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity.
Posted Tue Nov 20 08:37:04 2018

Continuous monitoring of near-bottom mesoplankton communities in the East China Sea during a series of typhoons
Posted Mon Nov 19 03:46:19 2018

Diatom bloom-derived biotoxins cause aberrant development and gene expression in the appendicularian chordate Oikopleura dioica
Posted Thu Nov 15 06:52:59 2018

The Gelatinous Macroplankton Community at the Hatoma Knoll Hydrothermal Vent
Posted Tue Nov 13 04:17:03 2018

The first definitive record of the giant larvacean, Bathochordaeus charon, since its original description in 1900 and a range extension to the northeast Pacific Ocean
Posted Mon Nov 12 04:55:15 2018

Architecture of, and water circulation and flow rate in, the house of the planktonic tunicate Oikopleura labradoriensis
Posted Fri Nov 9 11:25:51 2018

Long-distance cell migration during larval development in the appendicularian, Oikopleura dioica.
Posted Fri Nov 9 11:25:51 2018

The Subchordal Cells of Oikopleura dioica and O. albicans (Appendicularia, Chordata)
Posted Wed Nov 7 04:39:46 2018

Successful cryopreservation of coral larvae using vitrification and laser warming.
Posted Tue Nov 6 04:35:27 2018

Variation graph toolkit improves read mapping by representing genetic variation in the reference.
Posted Tue Nov 6 04:03:59 2018

On the origin and evolution of vertebrate olfactory receptor genes: comparative genome analysis among 23 chordate species.
Posted Fri Nov 2 05:15:39 2018

Resource allocation between somatic growth and reproductive output in the pelagic chordate Oikopleura dioica allows opportunistic response to nutritional variation.
Posted Tue Oct 30 05:12:44 2018

Internal and external morphology of adults of the appendicularian, Oikopleura dioica: an SEM study.
Posted Tue Oct 30 04:09:43 2018

Rolling circle amplification shows a sinusoidal template length-dependent amplification bias.
Posted Fri Oct 26 06:01:27 2018

Forming a tough shell via an intracellular matrix and cellular junctions in the tail epidermis of Oikopleura dioica (Chordata: Tunicata: Appendicularia).
Posted Thu Oct 25 08:28:42 2018

A self‐cleaning biological filter: How appendicularians mechanically control particle adhesion and removal.
Posted Wed Oct 24 04:46:24 2018

The house of Oikopleura dioica (Tunicata, Appendicularia): Structure and functions
Posted Fri Oct 19 08:26:02 2018

NAD+-dependent synthesis of a 5'-phospho-ADP-ribosylated RNA/DNA cap by RNA 2'-phosphotransferase Tpt1.
Posted Wed Oct 17 07:39:38 2018

Prevalence of Mutation-Prone Microhomology-Mediated End Joining in a Chordate Lacking the c-NHEJ DNA Repair Pathway.
Posted Mon Oct 15 06:44:31 2018

Xdrop: targeted sequencing of long DNA molecules from low input samples using droplet sorting
Posted Sat Oct 13 22:52:51 2018

Regulatory cocktail for dopaminergic neurons in a protovertebrate identified by whole-embryo single-cell transcriptomics.
Posted Tue Oct 2 04:20:34 2018

Functional response of the appendicularian Oikopleura dioica.
Posted Tue Oct 2 01:17:17 2018

Répartition des Appendiculaires au large des côtes de Californie
Posted Fri Sep 28 06:57:01 2018

Development of the house secreting epithelium, a major innovation of tunicate larvaceans, involves multiple homeodomain transcription factors.
Posted Thu Sep 20 04:02:56 2018

Preparation of megabase-sized DNA from a variety of organisms using the nuclei method for advanced genomics research.
Posted Thu Sep 20 02:33:13 2018

Nucleosomes Inhibit Cas9 Endonuclease Activity in Vitro.
Posted Wed Sep 19 02:46:43 2018

Self-biotinylation of DNA G-quadruplexes via intrinsic peroxidase activity.
Posted Wed Sep 5 04:58:07 2018

Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler
Posted Tue Sep 4 08:28:34 2018

A photoelectrochemical platform for the capture and release of rare single cells.
Posted Tue Sep 4 06:00:46 2018

Targeted chromatin ligation, a robust epigenetic profiling technique for small cell numbers.
Posted Mon Sep 3 06:10:18 2018

Zooplankton Species Groups in the North Pacific
Posted Mon Sep 3 05:54:08 2018

Systems of mechanized and reactive droplets powered by multi-responsive surfactants.
Posted Fri Aug 31 04:43:16 2018

OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica.
Posted Wed Aug 29 01:50:05 2018

The Seasonal Distribution of the Appendicularia in the Region of San Diego, California
Posted Tue Aug 28 05:12:03 2018

SLAM-ITseq: sequencing cell type-specific transcriptomes without cell sorting.
Posted Tue Aug 28 02:16:05 2018

Splicing heterogeneity: separating signal from noise.
Posted Mon Aug 27 07:18:04 2018

Splice site selection, rate of splicing, and alternative splicing on nascent transcripts.
Posted Mon Aug 27 06:59:19 2018

TruePrime is a novel method for whole-genome amplification from single cells based on TthPrimPol.
Posted Mon Aug 27 03:58:04 2018

From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy.
Posted Fri Aug 24 04:31:54 2018

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Posted Thu Aug 23 04:03:02 2018

BUSCO applications from quality assessments to gene prediction and phylogenomics.
Posted Thu Aug 23 04:03:02 2018

Highly Contiguous Genome Assemblies of 15 Drosophila Species Generated Using Nanopore Sequencing.
Posted Thu Aug 23 01:11:43 2018

Experimental evidence that thermal selection shapes mitochondrial genome evolution.
Posted Wed Aug 22 08:00:58 2018

Genome-wide SNP analysis explains coral diversity and recovery in the Ryukyu Archipelago.
Posted Tue Aug 21 05:37:48 2018

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage.
Posted Tue Aug 21 00:47:38 2018

Training alignment parameters for arbitrary sequencers with LAST-TRAIN.
Posted Mon Aug 20 01:30:51 2018

Functional specialization of cellulose synthase genes of prokaryotic origin in chordate larvaceans.
Posted Fri Aug 17 08:04:14 2018

The crystalline phase of cellulose changes under developmental control in a marine chordate.
Posted Fri Aug 17 08:04:14 2018

Deuterostome Genomics: Lineage-Specific Protein Expansions That Enabled Chordate Muscle Evolution.
Posted Thu Aug 16 08:22:32 2018

An improved PCR method for walking in uncloned genomic DNA.
Posted Tue Aug 14 05:48:06 2018

Highly efficient subtractive hybridization of cDNA
Posted Tue Aug 14 05:48:06 2018

Acid-sensing ion channels emerged over 600 Mya and are conserved throughout the deuterostomes.
Posted Tue Aug 14 05:44:12 2018

Evolutionary developmental biology and genomics.
Posted Tue Aug 14 00:28:12 2018

High-resolution mapping of DNA polymerase fidelity using nucleotide imbalances and next-generation sequencing
Posted Sat Aug 11 12:32:14 2018

Specialization of CDK1 and Cyclin B paralog functions in a coenocystic mode of oogenic meiosis.
Posted Fri Aug 10 08:24:11 2018

Creating a functional single-chromosome yeast.
Posted Fri Aug 10 07:02:14 2018

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate.
Posted Fri Aug 10 03:17:14 2018

Chromosome form and number in the larvacea
Posted Thu Aug 9 06:15:53 2018

Untersuchungen über die Gehäusebildung bei Appendicularien (Oikopleura dioica Fol)
Posted Thu Aug 9 06:15:53 2018

Appendicularia of Japanese Waters
Posted Tue Aug 7 08:34:17 2018

Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing.
Posted Sat Aug 4 11:22:36 2018

Coelimination and Survival in Gene Network Evolution: Dismantling the RA-Signaling in a Chordate.
Posted Fri Jul 13 02:31:44 2018

Unamplified cap analysis of gene expression on a single-molecule sequencer.
Posted Fri Jul 13 00:26:29 2018

Single-site DNA cleavage by Type III restriction endonuclease requires a site-bound enzyme and a trans-acting enzyme that are ATPase-activated.
Posted Wed Jul 11 03:23:34 2018

Oikopleura dioica alcohol dehydrogenase class 3 provides new insights into the evolution of retinoic acid synthesis in chordates.
Posted Mon Jul 2 05:58:33 2018

Sex-specific chromatin landscapes in an ultra-compact chordate genome.
Posted Mon Jul 2 05:38:59 2018

High Rate of Infection by Only Oncogenic Human Papillomavirus in Amerindians.
Posted Thu Jun 28 02:39:03 2018

Ghost cytometry.
Posted Mon Jun 25 05:21:02 2018

Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy.
Posted Tue Jun 12 04:05:46 2018

Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.
Posted Tue Jun 12 04:05:46 2018

C-BERST: defining subnuclear proteomic landscapes at genomic elements with dCas9-APEX2.
Posted Tue Jun 12 04:05:46 2018

Discovery of proteins associated with a predefined genomic locus via dCas9-APEX-mediated proximity labeling.
Posted Tue Jun 12 04:05:46 2018

Multiplexed precision genome editing with trackable genomic barcodes in yeast.
Posted Mon Jun 11 04:36:55 2018

Genome-scale engineering of Saccharomyces cerevisiae with single-nucleotide precision.
Posted Mon Jun 11 03:56:20 2018

The genome-wide rate and spectrum of spontaneous mutations differ between haploid and diploid yeast.
Posted Wed May 30 06:38:21 2018

The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements.
Posted Wed May 23 06:18:37 2018

Transcription of functionally related constitutive genes is not coordinated.
Posted Mon May 21 06:40:06 2018

STRT-seq-2i: dual-index 5' single cell and nucleus RNA-seq on an addressable microwell array.
Posted Mon May 21 04:39:45 2018

Incorporation of non-natural nucleotides into template-switching oligonucleotides reduces background and improves cDNA synthesis from very small RNA samples.
Posted Thu May 17 06:52:55 2018

Compounds that enhance the tailing activity of Moloney murine leukemia virus reverse transcriptase.
Posted Thu May 17 04:08:12 2018

Efficient N-tailing of blunt DNA ends by Moloney murine leukemia virus reverse transcriptase.
Posted Wed May 16 07:23:21 2018

Novel blunt-end addition reactions catalyzed by DNA polymerase I of Escherichia coli.
Posted Wed May 16 07:23:21 2018

Marked infidelity of human immunodeficiency virus type 1 reverse transcriptase at RNA and DNA template ends.
Posted Wed May 16 07:23:21 2018

Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI).
Posted Tue May 15 04:17:54 2018

A new method to prevent carry-over contaminations in two-step PCR NGS library preparations.
Posted Tue May 15 00:31:16 2018

De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution.
Posted Mon May 14 23:39:22 2018

Current techniques for single-cell lysis.
Posted Mon May 14 09:13:36 2018

Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida.
Posted Mon May 14 04:17:45 2018

Tunicates and not cephalochordates are the closest living relatives of vertebrates.
Posted Mon May 14 04:01:17 2018

An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models.
Posted Fri May 11 02:50:56 2018

A phylogenomic framework and timescale for comparative studies of tunicates.
Posted Fri May 11 02:50:56 2018

Hypervariable and highly divergent intron-exon organizations in the chordate Oikopleura dioica.
Posted Fri May 11 02:22:43 2018

Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis.
Posted Wed May 9 06:52:29 2018

Genomic overview of mRNA 5'-leader trans-splicing in the ascidian Ciona intestinalis.
Posted Wed May 9 06:46:57 2018

CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity.
Posted Fri Apr 27 08:37:20 2018

Evidence for a centrosome-attracting body like structure in germ-soma segregation during early development, in the urochordate Oikopleura dioica.
Posted Mon Apr 23 00:51:10 2018

Genome annotation by high-throughput 5' RNA end determination.
Posted Mon Apr 23 00:46:55 2018

Detecting RNA base methylations in single cells by in situ hybridization
Posted Sat Apr 21 02:35:22 2018

DNA interference-mediated screening of maternal factors in the chordate Oikopleura dioica.
Posted Fri Apr 20 08:16:14 2018

Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate.
Posted Fri Apr 20 00:53:33 2018

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq.
Posted Thu Apr 19 07:36:20 2018

Reverse transcriptase adds nontemplated nucleotides to cDNAs during 5'-RACE and primer extension.
Posted Thu Apr 19 01:55:21 2018

Targeted reduction of highly abundant transcripts using pseudo-random primers.
Posted Thu Apr 19 01:51:41 2018

Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome.
Posted Thu Apr 12 10:10:20 2018

Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs.
Posted Wed Apr 11 01:10:11 2018

Trans-Splicing and Operons in Metazoans: Translational Control in Maternally Regulated Development and Recovery from Growth Arrest.
Posted Fri Apr 6 13:11:45 2018

An Upper Limit on the Functional Fraction of the Human Genome.
Posted Fri Apr 6 12:49:34 2018

Cell-type specific sequencing of microRNAs from complex animal tissues.
Posted Fri Apr 6 08:33:53 2018

Evolved Cas9 variants with broad PAM compatibility and high DNA specificity.
Posted Fri Apr 6 07:26:08 2018

Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain.
Posted Thu Apr 5 02:32:16 2018

Precise Cas9 targeting enables genomic mutation prevention.
Posted Thu Apr 5 00:40:13 2018

The evolving proteome of a complex extracellular matrix, the Oikopleura house.
Posted Mon Apr 2 01:56:02 2018

Increased fitness of a key appendicularian zooplankton species under warmer, acidified seawater conditions.
Posted Mon Apr 2 01:42:39 2018

Reversible effects of nuclear membrane permeabilization on DNA replication: evidence for a positive licensing factor.
Posted Thu Mar 29 08:02:18 2018

The human noncoding genome defined by genetic diversity.
Posted Wed Mar 28 08:37:16 2018

Conservation and divergence of chemical defense system in the tunicate Oikopleura dioica revealed by genome wide response to two xenobiotics.
Posted Tue Mar 27 08:44:53 2018

Gentle masking of low-complexity sequences improves homology search.
Posted Tue Mar 27 03:21:30 2018

Miniature genome in the marine chordate Oikopleura dioica.
Posted Mon Mar 26 01:56:17 2018

The chemistrode: a droplet-based microfluidic device for stimulation and recording with high temporal, spatial, and chemical resolution.
Posted Mon Mar 26 00:12:36 2018

Isolation, incubation, and parallel functional testing and identification by FISH of rare microbial single-copy cells from multi-species mixtures using the combination of chemistrode and stochastic confinement.
Posted Mon Mar 26 00:10:23 2018

Spliced-Leader RNA trans Splicing in a Chordate, Oikopleura dioica, with a Compact Genome.
Posted Fri Mar 23 04:39:59 2018

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells.
Posted Thu Mar 22 05:11:00 2018

Controlled synthesis of cell-laden microgels by radical-free gelation in droplet microfluidics.
Posted Thu Mar 22 04:55:17 2018

Capture and Amplification by Tailing and Switching (CATS). An ultrasensitive ligation-independent method for generation of DNA libraries for deep sequencing from picogram amounts of DNA and RNA.
Posted Mon Mar 19 09:04:11 2018

Low-cell-number, single-tube amplification (STA) of total RNA revealed transcriptome changes from pluripotency to endothelium.
Posted Mon Mar 19 08:02:13 2018

A simple and fast method for profiling microRNA expression from low-input total RNA by microarray.
Posted Mon Mar 19 01:37:55 2018

Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements.
Posted Tue Mar 13 09:06:22 2018

Human papillomavirus genome integration in squamous carcinogenesis: what have next generation sequencing studies taught us?
Posted Thu Feb 22 03:46:29 2018

Transcription of mammalian messenger RNAs by a nuclear RNA polymerase of mitochondrial origin.
Posted Mon Feb 19 08:19:08 2018

Direct amplification of single-stranded DNA for pyrosequencing using linear-after-the-exponential (LATE)-PCR.
Posted Thu Feb 15 04:01:53 2018

Improvements of rolling circle amplification (RCA) efficiency and accuracy using Thermus thermophilus SSB mutant protein.
Posted Thu Feb 15 01:50:20 2018

Multi-targeted priming for genome-wide gene expression assays.
Posted Wed Feb 14 07:39:42 2018

Distinct populations of primary and secondary effectors during RNAi in C. elegans.
Posted Wed Feb 14 07:25:16 2018

High-throughput identification of RNA nuclear enrichment sequences.
Posted Wed Feb 14 01:33:22 2018

Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias.
Posted Wed Feb 7 10:02:10 2018

Microfluidic devices for high-throughput gene expression profiling of single hESC-derived neural stem cells.
Posted Wed Feb 7 01:02:20 2018

A new mathematical model for relative quantification in real-time RT-PCR.
Posted Tue Feb 6 09:53:12 2018

Global amplification of cDNA from limiting amounts of tissue. An improved method for gene cloning and analysis
Posted Tue Feb 6 03:55:31 2018

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data.
Posted Mon Feb 5 08:28:13 2018

General statistics of stochastic process of gene expression in eukaryotic cells.
Posted Mon Feb 5 08:25:46 2018

Reversal of T4 RNA ligase.
Posted Mon Feb 5 05:25:05 2018

Ligation of single-stranded oligodeoxyribonucleotides by T4 RNA ligase.
Posted Mon Feb 5 03:54:38 2018

T4 RNA ligase: substrate chain length requirements.
Posted Fri Feb 2 05:28:48 2018

5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing.
Posted Thu Feb 1 01:21:45 2018

Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage.
Posted Thu Feb 1 01:02:40 2018

Emergence of scaling in random networks
Posted Wed Jan 31 03:34:37 2018

Specificity and stability in topology of protein networks.
Posted Wed Jan 31 00:44:13 2018

Lethality and centrality in protein networks.
Posted Tue Jan 30 11:31:23 2018

Community structure in social and biological networks.
Posted Tue Jan 30 05:40:36 2018

Modular organization of cellular networks.
Posted Tue Jan 30 01:01:34 2018

Genomic analysis of gene expression relationships in transcriptional regulatory networks.
Posted Wed Jan 24 03:51:43 2018

Migration-based selections of antibodies that convert bone marrow into trafficking microglia-like cells that reduce brain amyloid β.
Posted Tue Jan 23 04:46:05 2018

Evidence for dynamically organized modularity in the yeast protein-protein interaction network.
Posted Tue Jan 23 04:00:05 2018

Conservation and coevolution in the scale-free human gene coexpression network.
Posted Mon Jan 22 00:57:59 2018

Novel concept of the smart NIR-light-controlled drug release of black phosphorus nanostructure for cancer therapy.
Posted Thu Jan 18 04:55:13 2018

Genomic analysis of regulatory network dynamics reveals large topological changes.
Posted Thu Jan 18 03:59:52 2018

Self-similarity of complex networks.
Posted Thu Jan 18 01:55:41 2018

Accelerating networks in biology, engineering and society.
Posted Tue Jan 16 09:16:43 2018

Functional cartography of complex metabolic networks.
Posted Mon Jan 15 04:46:38 2018

An evolutionary and functional assessment of regulatory network motifs.
Posted Mon Jan 15 04:46:38 2018

Team assembly mechanisms determine collaboration network structure and team performance.
Posted Fri Jan 12 08:41:25 2018

A network analysis of committees in the U.S. House of Representatives.
Posted Fri Jan 12 08:41:25 2018

Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators.
Posted Fri Jan 12 08:41:25 2018

Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli.
Posted Fri Jan 12 00:30:41 2018

The worldwide air transportation network: Anomalous centrality, community structure, and cities' global roles.
Posted Fri Jan 12 00:30:41 2018

Empirical analysis of an evolving social network.
Posted Fri Jan 12 00:30:41 2018

Optimizing T4 DNA polymerase conditions enhances the efficiency of one-step sequence- and ligation-independent cloning.
Posted Thu Jan 4 00:59:51 2018

Poly(A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation.
Posted Thu Dec 28 06:42:29 2017

Synthetic transcription elongation factors license transcription across repressive chromatin.
Posted Fri Dec 22 08:59:15 2017

Inherited Chromosomally Integrated Human Herpesvirus 6 Genomes Are Ancient, Intact, and Potentially Able To Reactivate from Telomeres.
Posted Tue Dec 12 00:20:51 2017

RNA ligase structures reveal the basis for RNA specificity and conformational changes that drive ligation forward.
Posted Mon Dec 4 08:06:30 2017

T4 RNA Ligase 2 truncated active site mutants: improved tools for RNA analysis
Posted Mon Dec 4 08:06:30 2017

Modularity and community structure in networks.
Posted Fri Nov 10 04:22:47 2017

Genomic analysis of the hierarchical structure of regulatory networks.
Posted Fri Nov 10 03:25:23 2017

Relating three-dimensional structures to protein networks provides evolutionary insights.
Posted Fri Nov 10 02:00:00 2017

The product space conditions the development of nations.
Posted Wed Nov 8 13:31:48 2017

Uncovering the overlapping community structure of complex networks in nature and society.
Posted Wed Nov 8 11:09:08 2017

Direct labeling of RNA with multiple biotins allows sensitive expression profiling of acute leukemia class predictor genes.
Posted Tue Nov 7 08:18:15 2017

Probe generation directly from small numbers of cells for DNA microarray studies.
Posted Tue Nov 7 07:57:00 2017

Quantitative analysis of mRNA amplification by in vitro transcription.
Posted Tue Nov 7 07:48:46 2017

Linear mRNA amplification from as little as 5 ng total RNA for global gene expression analysis.
Posted Tue Nov 7 07:36:43 2017

Comparative evaluation of linear and exponential amplification techniques for expression profiling at the single-cell level.
Posted Tue Nov 7 07:28:43 2017

RNA amplification strategies for small sample populations.
Posted Mon Nov 6 04:51:43 2017

Combined histochemical staining, RNA amplification, regional, and single cell cDNA analysis within the hippocampus.
Posted Thu Nov 2 04:11:43 2017

Regulation of average length of complex PCR product.
Posted Wed Nov 1 08:42:24 2017

Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides.
Posted Wed Nov 1 08:33:09 2017

A blocked structure at the 5' terminus of mRNA from cytoplasmic polyhedrosis virus.
Posted Wed Nov 1 04:11:46 2017

Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library.
Posted Wed Nov 1 04:11:46 2017

Oligodeoxyribonucleotide ligation to single-stranded cDNAs: a new tool for cloning 5' ends of mRNAs and for constructing cDNA libraries by in vitro amplification.
Posted Tue Oct 31 06:06:24 2017

Synthesis of full-length cDNA using DNA-capped mRNA.
Posted Mon Oct 30 07:59:49 2017

Improved full-length cDNA production based on RNA tagging by T4 DNA ligase.
Posted Mon Oct 30 07:56:05 2017

Identification and prevention of a GC content bias in SAGE libraries.
Posted Fri Oct 27 02:10:00 2017

The significance of digital gene expression profiles.
Posted Thu Oct 26 08:23:49 2017

The comparison of gene expression from multiple cDNA libraries.
Posted Thu Oct 26 00:38:47 2017

aRNA-longSAGE: a new approach to generate SAGE libraries from microdissected cells.
Posted Thu Oct 26 00:38:47 2017

Comprehensive transcript analysis in small quantities of mRNA by SAGE-lite.
Posted Wed Oct 25 05:10:05 2017

Identification of the mismatch repair genes PMS2 and MLH1 as p53 target genes by using serial analysis of binding elements.
Posted Wed Oct 25 00:12:34 2017

A code for transcription initiation in mammalian genomes.
Posted Tue Oct 24 03:40:29 2017

The synthesis of oligodeoxyribonucleotides using RNA ligase.
Posted Tue Oct 24 01:48:51 2017

The use of ammonium acetate in the precipitation of ribonucleic acid.
Posted Tue Oct 24 01:45:14 2017

Ethanol precipitation of DNA with linear polyacrylamide as carrier.
Posted Tue Oct 24 00:40:35 2017

Hexamine cobalt chloride promotes intermolecular ligation of blunt end DNA fragments by T4 DNA ligase.
Posted Fri Oct 20 08:36:23 2017

Protection of megabase DNA from shearing.
Posted Fri Oct 20 06:15:18 2017

Improved DNA sequencing accuracy and detection of heterozygous alleles using manganese citrate and different fluorescent dye terminators.
Posted Fri Oct 20 04:57:28 2017

Optimization of in vitro transcription and full-length cDNA synthesis using the T4 bacteriophage gene 32 protein.
Posted Fri Oct 20 00:51:11 2017

Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D.
Posted Thu Oct 19 01:08:03 2017

Man-made cell-like compartments for molecular evolution.
Posted Wed Oct 18 01:24:14 2017

STABLE: protein-DNA fusion system for screening of combinatorial protein libraries in vitro.
Posted Wed Oct 18 00:42:17 2017

Directed evolution of polymerase function by compartmentalized self-replication.
Posted Tue Oct 17 05:18:48 2017

Microbead display by in vitro compartmentalisation: selection for binding using flow cytometry.
Posted Tue Oct 17 03:37:59 2017

Single-molecule PCR using water-in-oil emulsion.
Posted Tue Oct 17 01:41:44 2017

DNA display for in vitro selection of diverse peptide libraries.
Posted Tue Oct 17 01:06:46 2017

In vitro compartmentalization by double emulsions: sorting and gene enrichment by fluorescence activated cell sorting.
Posted Tue Oct 17 00:13:24 2017

Altering the sequence specificity of HaeIII methyltransferase by directed evolution using in vitro compartmentalization.
Posted Mon Oct 16 06:04:07 2017

Generic expansion of the substrate spectrum of a DNA polymerase by directed evolution.
Posted Mon Oct 16 04:50:50 2017

In vitro selection of restriction endonucleases by in vitro compartmentalization.
Posted Mon Oct 16 01:49:53 2017

Covalent DNA display as a novel tool for directed evolution of proteins in vitro.
Posted Fri Oct 13 13:08:16 2017

Directed evolution of protein inhibitors of DNA-nucleases by in vitro compartmentalization (IVC) and nano-droplet delivery.
Posted Fri Oct 13 11:26:07 2017

Direct selection of trans-acting ligase ribozymes by in vitro compartmentalization.
Posted Fri Oct 13 06:36:05 2017

BEAMing up for detection and quantification of rare sequence variants.
Posted Wed Oct 11 02:54:11 2017

Selection of ribozymes that catalyse multiple-turnover Diels-Alder cycloadditions by using in vitro compartmentalization.
Posted Wed Oct 11 00:20:29 2017

Cell-free selection of zinc finger DNA-binding proteins using in vitro compartmentalization.
Posted Tue Oct 10 03:07:30 2017

RNA maps reveal new RNA classes and a possible function for pervasive transcription.
Posted Mon Oct 9 04:45:13 2017

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Posted Sat Oct 7 02:46:31 2017

The transcriptional landscape of the mammalian genome.
Posted Fri Oct 6 08:13:24 2017

Global identification of human transcribed sequences with genome tiling arrays.
Posted Fri Oct 6 05:14:54 2017

Clustering of DNA sequences in human promoters.
Posted Fri Oct 6 03:47:42 2017

Analysis of human transcriptomes.
Posted Fri Oct 6 03:44:54 2017

An abundance of bidirectional promoters in the human genome.
Posted Fri Oct 6 03:44:54 2017

5' Long serial analysis of gene expression (LongSAGE) and 3' LongSAGE for transcriptome characterization and genome annotation.
Posted Thu Oct 5 00:22:32 2017

Increasing the efficiency of SAGE adaptor ligation by directed ligation chemistry.
Posted Wed Oct 4 04:28:01 2017

Psychrophilic proteases dramatically reduce single cell RNA-seq artifacts: A molecular atlas of kidney development.
Posted Wed Oct 4 01:23:12 2017

Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries.
Posted Tue Oct 3 01:05:20 2017

Simple cDNA normalization using kamchatka crab duplex-specific nuclease.
Posted Mon Oct 2 06:26:27 2017

Purification and properties of bacteriophage T4-induced RNA ligase.
Posted Fri Sep 29 05:45:00 2017

Synthesis and reactivity of intermediates formed in the T4 RNA ligase reaction.
Posted Fri Sep 29 03:42:22 2017

Donor activation in the T4 RNA ligase reaction.
Posted Fri Sep 29 03:42:22 2017

Reactions at the termini of tRNA with T4 RNA ligase.
Posted Fri Sep 29 00:55:09 2017

Unambiguous identification of miRNA:target site interactions by different types of ligation reactions.
Posted Thu Sep 28 14:00:32 2017

Bacteriophage T4 RNA ligase. Reaction intermediates and interaction of substrates.
Posted Thu Sep 28 03:59:41 2017

Effect of manganese ions on the incorporation of dideoxynucleotides by bacteriophage T7 DNA polymerase and Escherichia coli DNA polymerase I.
Posted Thu Sep 28 00:01:38 2017

Archaebacterial DNA polymerases tightly bind uracil-containing DNA.
Posted Mon Sep 25 04:03:39 2017

The mitochondrial RNA ligase from Leishmania tarentolae can join RNA molecules bridged by a complementary RNA.
Posted Mon Sep 25 00:45:26 2017

Transcriptomic Analysis of Ribosome-Bound mRNA in Cortical Neurites In Vivo.
Posted Mon Sep 25 00:45:26 2017

Engineering human PrimPol into an efficient RNA-dependent-DNA primase/polymerase.
Posted Mon Sep 25 00:45:26 2017

Alkaline phosphatase from the Antarctic strain TAB5. Properties and psychrophilic adaptations.
Posted Fri Sep 22 09:00:48 2017

Engineering the properties of a cold active enzyme through rational redesign of the active site.
Posted Fri Sep 22 07:18:33 2017

Archaeal dUTPase enhances PCR amplifications with archaeal DNA polymerases by preventing dUTP incorporation.
Posted Fri Sep 22 05:02:55 2017

Purification of histidine-tagged T4 RNA ligase from E. coli.
Posted Fri Sep 22 04:24:05 2017

Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains.
Posted Fri Sep 22 04:07:14 2017

Structure-function analysis of T4 RNA ligase 2.
Posted Thu Sep 21 05:13:35 2017

Discovery and characterization of a thermostable bacteriophage RNA ligase homologous to T4 RNA ligase 1.
Posted Thu Sep 21 01:38:19 2017

Structure and mechanism of RNA ligase.
Posted Thu Sep 21 00:05:27 2017

Characterization of bacteriophage KVP40 and T4 RNA ligase 2.
Posted Wed Sep 20 08:27:41 2017

Practical and general synthesis of 5'-adenylated RNA (5'-AppRNA).
Posted Wed Sep 20 05:27:50 2017

RNA substrate specificity and structure-guided mutational analysis of bacteriophage T4 RNA ligase 2.
Posted Wed Sep 20 02:22:14 2017

Dual mechanisms whereby a broken RNA end assists the catalysis of its repair by T4 RNA ligase 2.
Posted Wed Sep 20 02:22:14 2017

Isolation and characterization of a thermostable RNA ligase 1 from a Thermus scotoductus bacteriophage TS2126 with good single-stranded DNA ligation properties.
Posted Wed Sep 20 00:06:59 2017

Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins.
Posted Thu Sep 14 08:09:15 2017

Novel 3'-ribonuclease and 3'-phosphatase activities of the bacterial non-homologous end-joining protein, DNA ligase D.
Posted Thu Sep 14 08:09:15 2017

The wild-type Schizosaccharomyces pombe mat1 imprint consists of two ribonucleotides.
Posted Tue Sep 12 01:32:36 2017

A second, non-canonical RNA-dependent RNA polymerase in SARS coronavirus.
Posted Tue Sep 12 01:28:50 2017

XRCC4:DNA ligase IV can ligate incompatible DNA ends and can ligate across gaps.
Posted Tue Sep 12 01:28:50 2017

mRNA cap analogues substituted in the tetraphosphate chain with CX2: identification of O-to-CCl2 as the first bridging modification that confers resistance to decapping without impairing translation.
Posted Sun Sep 10 05:47:44 2017

A simple and efficient method for direct cloning of PCR products using ddT-tailed vectors.
Posted Wed Sep 6 06:10:53 2017

The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing.
Posted Tue Sep 5 08:44:30 2017

Genome-scale activation screen identifies a lncRNA locus regulating a gene neighbourhood.
Posted Thu Aug 31 04:00:23 2017

cDNA library construction from a small amount of RNA: adaptor-ligation approach for two-round cRNA amplification using T7 and SP6 RNA polymerases.
Posted Thu Aug 31 00:23:48 2017

Public antibodies to malaria antigens generated by two LAIR1 insertion modalities.
Posted Thu Aug 31 00:23:48 2017

1274 full-open reading frames of transcripts expressed in the developing mouse nervous system.
Posted Tue Aug 29 06:38:12 2017

Serial analysis of gene expression in a single cell.
Posted Thu Aug 24 00:36:15 2017

Expression profiling of single cells using 3 prime end amplification (TPEA) PCR.
Posted Thu Aug 24 00:36:15 2017

Kv4.2 mRNA abundance and A-type K(+) current amplitude are linearly related in basal ganglia and basal forebrain neurons.
Posted Thu Aug 24 00:26:39 2017

Identification of cell-specific messenger ribonucleic acids in oxytocinergic and vasopressinergic magnocellular neurons in rat supraoptic nucleus by single-cell differential hybridization.
Posted Thu Aug 24 00:26:39 2017

Polylox barcoding reveals haematopoietic stem cell fates realized in vivo.
Posted Thu Aug 24 00:26:39 2017

Modified 3'-end amplification PCR for gene expression analysis in single cells.
Posted Wed Aug 16 03:56:34 2017

Single-cell microarray analysis in hippocampus CA1: demonstration and validation of cellular heterogeneity.
Posted Wed Aug 16 03:56:34 2017

Toehold switches: de-novo-designed regulators of gene expression.
Posted Thu Aug 3 07:13:03 2017

Hypothalamic stem cells control ageing speed partly through exosomal miRNAs.
Posted Thu Aug 3 07:13:03 2017

Heritable L1 retrotransposition in the mouse primordial germline and early embryo.
Posted Wed Aug 2 07:10:11 2017

Gene discovery in genetically labeled single dopaminergic neurons of the retina.
Posted Wed Aug 2 05:29:12 2017

An efficient strategy to isolate full-length cDNAs based on an mRNA cap retention procedure (CAPture).
Posted Wed Aug 2 05:29:12 2017

Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels.
Posted Tue Aug 1 04:19:09 2017

Features of genomic organization in a nucleotide-resolution molecular model of the Escherichia coli chromosome.
Posted Tue Aug 1 01:45:12 2017

A genetically encoded tag for correlated light and electron microscopy of intact cells, tissues, and organisms.
Posted Tue Aug 1 00:56:25 2017

ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells.
Posted Mon Jul 31 08:29:47 2017

Amplification and analysis of cDNA generated from a single cell by 5'-RACE: application to isolation of antibody heavy and light chain variable gene sequences from single B cells.
Posted Thu Jul 27 00:13:11 2017

Insight into the mechanism of nonenzymatic RNA primer extension from the structure of an RNA-GpppG complex.
Posted Wed Jul 26 02:20:19 2017

CRISPR-Cas encoding of a digital movie into the genomes of a population of living bacteria.
Posted Tue Jul 25 08:31:32 2017

Triazole-linked analogue of deoxyribonucleic acid ((TL)DNA): design, synthesis, and double-strand formation with natural DNA.
Posted Thu Jul 20 01:10:37 2017

NicE-seq: high resolution open chromatin profiling.
Posted Thu Jul 6 07:06:54 2017

Nm-seq maps 2'-O-methylation sites in human mRNA with base precision.
Posted Mon Jul 3 07:15:00 2017

A synthetic biology approach to integrative high school STEM training.
Posted Wed Jun 21 06:48:43 2017

Artificial Intelligence to Win the Nobel Prize and Beyond: Creating the Engine for Scientific Discovery.
Posted Thu Jun 15 07:13:59 2017

A maternal-effect selfish genetic element in Caenorhabditis elegans.
Posted Sun Jun 11 09:04:56 2017

Alternative TSSs are co-regulated in single cells in the mouse brain.
Posted Tue Jun 6 06:59:14 2017

Optimized flow cytometric analysis of central nervous system tissue reveals novel functional relationships among cells expressing CD133, CD15, and CD24.
Posted Tue May 30 04:33:14 2017

DNase I behaves as a transcription factor which modulates Fas expression in human cells.
Posted Tue May 30 04:28:58 2017

Cell fixation and preservation for droplet-based single-cell transcriptomics.
Posted Tue May 30 01:13:09 2017

Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression.
Posted Fri May 26 08:32:38 2017

Integration of CpG-free DNA induces de novo methylation of CpG islands in pluripotent stem cells.
Posted Fri May 26 08:32:38 2017

Negative selection in humans and fruit flies involves synergistic epistasis.
Posted Tue May 9 03:59:00 2017

Impact of cytosine methylation on DNA binding specificities of human transcription factors.
Posted Mon May 8 07:03:16 2017

De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly.
Posted Sat Apr 29 12:31:59 2017

Arm-specific cleavage and mutation during reverse transcription of 2΄,5΄-branched RNA by Moloney murine leukemia virus reverse transcriptase.
Posted Tue Apr 25 07:07:47 2017

Papilloma-pseudovirus eradicates intestinal tumours and triples the lifespan of Apc(Min/+) mice.
Posted Fri Apr 14 06:20:09 2017

NanoCAGE: A Method for the Analysis of Coding and Noncoding 5'-Capped Transcriptomes
Posted Tue Apr 4 04:38:29 2017

Power analysis of single-cell RNA-sequencing experiments.
Posted Mon Apr 3 06:29:44 2017

Deep-sea vent phage DNA polymerase specifically initiates DNA synthesis in the absence of primers.
Posted Tue Mar 28 06:18:49 2017

Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos.
Posted Thu Mar 16 03:40:09 2017

Intragenic DNA methylation prevents spurious transcription initiation.
Posted Thu Mar 2 01:55:52 2017

A method for high-throughput production of sequence-verified DNA libraries and strain collections.
Posted Wed Mar 1 12:23:32 2017

Viral E6 is overexpressed via high viral load in invasive cervical cancer with episomal HPV16.
Posted Wed Feb 22 06:23:40 2017

Short structured RNAs with low GC content are selectively lost during extraction from a small number of cells.
Posted Wed Feb 15 03:48:57 2017

Single-cell chromatin accessibility reveals principles of regulatory variation.
Posted Tue Feb 14 13:37:15 2017

The human initiator is a distinct and abundant element that is precisely positioned in focused core promoters.
Posted Wed Feb 1 12:09:51 2017

Reversible methylation of m6Am in the 5' cap controls mRNA stability.
Posted Thu Jan 19 00:28:25 2017

mRNA capping: biological functions and applications.
Posted Wed Jan 18 08:59:51 2017

Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing.
Posted Wed Jan 18 04:33:55 2017

Droplet barcoding for massively parallel single-molecule deep sequencing.
Posted Wed Jan 18 04:30:17 2017

Genome-wide uniformity of human 'open' pre-initiation complexes.
Posted Wed Jan 4 00:57:20 2017

A cost effective 5' selective single cell transcriptome profiling approach with improved UMI design.
Posted Mon Dec 26 05:40:17 2016

Presence and expression of human papillomavirus sequences in human cervical carcinoma cell lines.
Posted Mon Dec 26 03:59:22 2016

Tumor antigen and human chorionic gonadotropin in CaSki cells: a new epidermoid cervical cancer cell line.
Posted Mon Dec 26 02:34:10 2016

Tandemly Integrated HPV16 Can Form a Brd4-Dependent Super-Enhancer-Like Element That Drives Transcription of Viral Oncogenes.
Posted Thu Nov 10 07:51:38 2016

NaOH concentration and streptavidin bead type are key factors for optimal DNA aptamer strand separation and isolation.
Posted Fri Sep 16 09:02:11 2016

A highly conserved program of neuronal microexons is misregulated in autistic brains.
Posted Sun Sep 11 05:24:44 2016

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons.
Posted Tue Aug 30 03:59:01 2016

Locked nucleic acid pentamers as universal PCR primers for genomic DNA amplification.
Posted Mon Aug 29 07:09:13 2016

Selective single cell isolation for genomics using microraft arrays.
Posted Thu Aug 18 10:33:10 2016

Disruption of promoter memory by synthesis of a long noncoding RNA.
Posted Mon Aug 15 07:26:30 2016

UMI-4C for quantitative and targeted chromosomal contact profiling.
Posted Mon Aug 8 06:45:35 2016

Dense transcript profiling in single cells by image correlation decoding.
Posted Sun Aug 7 05:24:55 2016

Nanoscale imaging of RNA with expansion microscopy.
Posted Sun Aug 7 05:24:55 2016

Regulation of alternative splicing at the single-cell level.
Posted Sat Aug 6 01:34:33 2016

Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis.
Posted Thu Aug 4 01:53:19 2016

Pervasive isoform-specific translational regulation via alternative transcription start sites in mammals.
Posted Wed Aug 3 04:41:23 2016

Ubiquitously expressed genes participate in cell-specific functions via alternative promoter usage
Posted Tue Aug 2 07:02:35 2016

Identification of host transcriptional networks showing concentration-dependent regulation by HPV16 E6 and E7 proteins in basal cervical squamous epithelial cells.
Posted Mon Aug 1 08:35:51 2016

Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates.
Posted Thu Jul 28 08:03:04 2016

The next generation of target capture technologies - large DNA fragment enrichment and sequencing determines regional genomic variation of high complexity.
Posted Mon Jul 25 05:31:10 2016

Global transcript structure resolution of high gene density genomes through multi-platform data integration.
Posted Mon Jul 25 00:23:25 2016

Biochemical identification of A-to-I RNA editing sites by the inosine chemical erasing (ICE) method.
Posted Fri Jul 15 01:02:34 2016

A federated ecosystem for sharing genomic, clinical data.
Posted Tue Jul 12 08:11:09 2016

Loss of Dependence on Continued Expression of the Human Papillomavirus 16 E7 Oncogene in Cervical Cancers and Precancerous Lesions Arising in Fanconi Anemia Pathway-Deficient Mice.
Posted Thu Jul 7 00:53:58 2016

The paraffin-embedded RNA metric (PERM) for RNA isolated from formalin-fixed, paraffin-embedded tissue.
Posted Tue May 31 01:14:39 2016

RNA-Seq following PCR-based sorting reveals rare cell transcriptional signatures.
Posted Tue May 31 01:14:39 2016

Template-independent ligation of single-stranded DNA by T4 DNA ligase.
Posted Thu May 12 10:11:27 2016

DNA detection using recombination proteins.
Posted Tue May 10 08:47:18 2016

Cis-regulatory architecture of a brain signaling center predates the origin of chordates.
Posted Thu Apr 28 10:38:38 2016

Bioanalyzer chips can be used interchangeably for many analyses of DNA or RNA.
Posted Tue Apr 19 06:57:37 2016

Identification and characterization of extensive intra-molecular associations between 3'-UTRs and their ORFs.
Posted Tue Mar 29 06:44:36 2016

cual-id: Globally Unique, Correctable, and Human-Friendly Sample Identifiers for Comparative Omics Studies
Posted Fri Feb 26 03:57:22 2016

DTIE, a novel core promoter element that directs start site selection in TATA-less genes.
Posted Tue Feb 23 03:44:55 2016

Sizing femtogram amounts of dsDNA by single-molecule counting.
Posted Tue Feb 16 07:33:41 2016

Enhancer elements.
Posted Tue Feb 16 07:33:41 2016

Structural basis for m7G recognition and 2'-O-methyl discrimination in capped RNAs by the innate immune receptor RIG-I.
Posted Wed Jan 20 03:55:33 2016

Differential priming of RNA templates during cDNA synthesis markedly affects both accuracy and reproducibility of quantitative competitive reverse-transcriptase PCR.
Posted Wed Jan 20 03:55:33 2016

Olfactory sensory neurons transiently express multiple olfactory receptors during development.
Posted Wed Jan 13 08:00:52 2016

Temperature-induced variation in gene expression burst size in metazoan cells.
Posted Tue Jan 12 08:24:14 2016

Novel 5'/3'RACE Method for Amplification and Determination of Single-Stranded RNAs Through Double-Stranded RNA (dsRNA) Intermediates.
Posted Wed Jan 6 08:45:50 2016

Fixed single-cell transcriptomic characterization of human radial glial diversity.
Posted Tue Jan 5 08:11:54 2016

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Posted Mon Dec 28 09:48:03 2015

Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins.
Posted Mon Dec 28 06:26:54 2015

An essential cell cycle regulation gene causes hybrid inviability in Drosophila.
Posted Thu Dec 24 07:21:41 2015

Selective small-molecule inhibition of an RNA structural element.
Posted Thu Dec 24 07:01:09 2015

ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis.
Posted Mon Dec 21 04:02:42 2015

Application of an RNA amplification method for reliable single-cell transcriptome analysis.
Posted Mon Dec 21 01:29:20 2015

The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition.
Posted Wed Dec 9 07:57:28 2015

Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells.
Posted Thu Nov 19 02:25:08 2015

Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells.
Posted Thu Nov 12 08:19:42 2015

Determining exon connectivity in complex mRNAs by nanopore sequencing.
Posted Thu Nov 12 07:58:41 2015

Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state.
Posted Tue Oct 27 07:24:26 2015

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters.
Posted Wed Sep 30 02:05:11 2015

FDF-PAGE: a powerful technique revealing previously undetected small RNAs sequestered by complementary transcripts.
Posted Wed Sep 16 01:51:48 2015

Efficient and quantitative high-throughput tRNA sequencing.
Posted Tue Sep 1 08:06:57 2015

ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments.
Posted Tue Sep 1 08:06:57 2015

Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments.
Posted Mon Aug 31 13:40:22 2015

Nanoparticle vesicle encoding for imaging and tracking cell populations.
Posted Tue Aug 18 07:21:36 2015

High-throughput analysis of yeast replicative aging using a microfluidic system.
Posted Tue Aug 18 07:21:36 2015

NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites.
Posted Sun Aug 16 21:13:08 2015

Re-use of commercial microfluidics chips for DNA, RNA, and protein electrophoresis.
Posted Wed Aug 12 22:39:10 2015

Rsu1 regulates ethanol consumption in Drosophila and humans.
Posted Wed Aug 12 22:39:10 2015

Combining protein and mRNA quantification to decipher transcriptional regulation.
Posted Mon Aug 3 08:49:02 2015

Structure of silent transcription intervals and noise characteristics of mammalian genes.
Posted Mon Aug 3 08:49:02 2015

Assessing the detection of human papillomavirus late mRNA in liquid base cytology samples for risk stratification of cervical disease.
Posted Tue Jul 28 08:46:53 2015

UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation.
Posted Thu Jul 16 23:50:43 2015

Scalable microfluidics for single-cell RNA printing and sequencing.
Posted Tue Jul 14 07:06:12 2015

Single-cell polyadenylation site mapping reveals 3' isoform choice variability.
Posted Mon Jul 6 07:46:02 2015

Biases in Illumina transcriptome sequencing caused by random hexamer priming.
Posted Thu Jul 2 06:57:20 2015

Consistent errors in first strand cDNA due to random hexamer mispriming.
Posted Thu Jul 2 06:57:20 2015

Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures.
Posted Tue Jun 30 07:35:12 2015

Global analysis of RNA cleavage by 5′-hydroxyl RNA sequencing.
Posted Thu Jun 25 08:58:13 2015

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.
Posted Fri Jun 12 02:25:12 2015

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes.
Posted Mon Jun 1 08:32:02 2015

Epigenetics. Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing.
Posted Mon Jun 1 08:32:02 2015

Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness
Posted Mon May 18 01:53:50 2015

Quantitative transcriptomics using designed primer-based amplification.
Posted Mon May 18 01:53:50 2015

CAP+ selection: A combined chemical-enzymatic strategy for efficient eukaryotic mRNA enrichment via the 5' cap.
Posted Mon May 18 01:53:50 2015

Conditions for the selective synthesis of DNA complementary to template RNA.
Posted Mon May 18 01:53:50 2015

RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
Posted Fri May 8 08:38:19 2015

Single Cell Transcriptome Amplification with MALBAC.
Posted Tue Apr 21 07:46:21 2015

Normalization of RNA-seq data using factor analysis of control genes or samples.
Posted Mon Apr 20 05:00:58 2015

A simple method for encapsulating single cells in alginate microspheres allows for direct PCR and whole genome amplification.
Posted Mon Apr 13 09:20:35 2015

NAD captureSeq indicates NAD as a bacterial cap for a subset of regulatory RNAs.
Posted Tue Apr 7 08:18:12 2015

Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA.
Posted Tue Apr 7 01:24:36 2015

Assessing the prevalence of mycoplasma contamination in cell culture via a survey of NCBI's RNA-seq archive.
Posted Tue Apr 7 01:24:36 2015

Genetic variation of human papillomavirus type 16 in individual clinical specimens revealed by deep sequencing.
Posted Fri Feb 27 01:45:33 2015

m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation.
Posted Fri Feb 27 01:45:33 2015

Combinatorial labeling of single cells for gene expression cytometry.
Posted Mon Feb 9 07:11:06 2015

Modeling bi-modality improves characterization of cell cycle on gene expression in single cells.
Posted Tue Feb 3 08:23:54 2015

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells.
Posted Tue Feb 3 08:23:54 2015

3' terminal diversity of MRP RNA and other human noncoding RNAs revealed by deep sequencing.
Posted Wed Jan 28 12:25:55 2015

Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis.
Posted Wed Jan 28 12:25:55 2015

Application of an asymmetric helical tube reactor for fast identification of gene transcripts of pathogenic viruses by micro flow-through PCR.
Posted Wed Oct 15 06:29:17 2014

Non-random integration of the HPV genome in cervical cancer.
Posted Tue Oct 14 08:11:59 2014

Digital-Direct-RT-PCR: a sensitive and specific method for quantification of CTC in patients with cervical carcinoma.
Posted Thu Oct 2 11:11:42 2014

Increasing population growth by asymmetric segregation of a limiting resource during cell division.
Posted Thu Sep 25 23:22:23 2014

Regional modulation of a stochastically expressed factor determines photoreceptor subtypes in the Drosophila retina.
Posted Thu Sep 25 23:22:23 2014

Visualization of dynamics of single endogenous mRNA labeled in live mouse.
Posted Thu Sep 25 23:22:23 2014

Transcriptional profiling of cells sorted by RNA abundance.
Posted Thu Sep 25 23:22:23 2014

The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity.
Posted Thu Sep 25 23:22:23 2014

Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations.
Posted Fri Sep 19 04:54:23 2014

Genome sequencing of normal cells reveals developmental lineages and mutational processes.
Posted Thu Sep 18 04:41:53 2014

High-resolution analysis with novel cell-surface markers identifies routes to iPS cells.
Posted Thu Aug 28 11:39:40 2014

Cell cycle dependent oscillatory expression of estrogen receptor-α links Pol II elongation to neoplastic transformation.
Posted Tue Aug 26 10:58:31 2014

Cell cycle population effects in perturbation studies.
Posted Wed Aug 20 08:47:31 2014

Accelerated chromatin biochemistry using DNA-barcoded nucleosome libraries.
Posted Wed Aug 20 06:49:01 2014

Digital encoding of cellular mRNAs enabling precise and absolute gene expression measurement by single-molecule counting.
Posted Wed Aug 20 02:09:44 2014

Sensitive, multiplex and direct quantification of RNA sequences using a modified RASL assay.
Posted Mon Aug 18 08:33:05 2014

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex.
Posted Fri Aug 8 09:10:30 2014

Functionally diverse dendritic mRNAs rapidly associate with ribosomes following a novel experience.
Posted Wed Aug 6 01:53:31 2014

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.
Posted Fri Jul 25 07:47:28 2014

The ground state of embryonic stem cell self-renewal.
Posted Thu Jul 24 08:28:07 2014

Control of ground-state pluripotency by allelic regulation of Nanog.
Posted Thu Jul 24 08:28:07 2014

Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency.
Posted Wed Jul 23 12:25:31 2014

TRF2, but not TBP, mediates the transcription of ribosomal protein genes.
Posted Wed Jul 23 01:10:21 2014

Human tRNA synthetase catalytic nulls with diverse functions.
Posted Wed Jul 23 01:10:21 2014

Reconfigurable microfluidic hanging drop network for multi-tissue interaction and analysis.
Posted Thu Jul 17 09:45:35 2014

Trpc2-Expressing Sensory Neurons in the Main Olfactory Epithelium of the Mouse.
Posted Thu Jul 17 09:45:35 2014

Four methods of preparing mRNA 5' end libraries using the illumina sequencing platform.
Posted Thu Jul 17 09:45:35 2014

Low-grade chromosomal mosaicism in human somatic and embryonic stem cell populations.
Posted Wed Jul 9 08:39:52 2014

Second-strand cDNA synthesis with E. coli DNA polymerase I and RNase H: the fate of information at the mRNA 5' terminus and the effect of E. coli DNA ligase.
Posted Tue Jul 8 11:05:18 2014

mTORC1 controls the adaptive transition of quiescent stem cells from G0 to G(Alert)
Posted Wed Jul 2 08:20:29 2014

Transplanted terminally differentiated induced pluripotent stem cells are accepted by immune mechanisms similar to self-tolerance.
Posted Tue Jul 1 06:41:57 2014

biobambam: tools for read pair collation based algorithms on BAM files
Posted Tue Jul 1 04:24:56 2014

Identification of cell cycle-regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors.
Posted Mon Jun 30 09:21:37 2014

Screening for noise in gene expression identifies drug synergies.
Posted Wed Jun 25 08:03:40 2014

PKR is activated by cellular dsRNAs during mitosis and acts as a mitotic regulator.
Posted Tue Jun 24 09:17:49 2014

Controlling low rates of cell differentiation through noise and ultrahigh feedback.
Posted Tue Jun 24 09:13:22 2014

Molecular indexing enables quantitative targeted RNA sequencing and reveals poor efficiencies in standard library preparations.
Posted Mon Jun 23 02:14:30 2014

Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs.
Posted Tue Jun 17 07:53:40 2014

Homeostatic control of polo-like kinase-1 engenders non-genetic heterogeneity in G2 checkpoint fidelity and timing.
Posted Thu Jun 12 08:25:11 2014

Generation of organized germ layers from a single mouse embryonic stem cell.
Posted Wed Jun 11 06:39:49 2014

Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes.
Posted Tue Jun 10 09:10:52 2014

MuLV-related endogenous retroviral elements and Flt3 participate in aberrant end-joining events that promote B-cell leukemogenesis.
Posted Tue Jun 10 09:10:52 2014

Pronounced cohabitation of active immunoglobulin genes from three different chromosomes in transcription factories during maximal antibody synthesis.
Posted Thu Jun 5 07:16:47 2014

Sensitivity and accuracy of quantitative real-time polymerase chain reaction using SYBR green I depends on cDNA synthesis conditions.
Posted Wed Jun 4 09:15:56 2014

HJURP is a cell-cycle-dependent maintenance and deposition factor of CENP-A at centromeres.
Posted Wed Jun 4 05:47:32 2014

Towards error-free profiling of immune repertoires.
Posted Mon Jun 2 08:33:45 2014

An mRNA is capped by a 2', 5' lariat catalyzed by a group I-like ribozyme.
Posted Mon Jun 2 03:45:38 2014

Microfluidic high-throughput culturing of single cells for selection based on extracellular metabolite production or consumption.
Posted Thu May 29 08:04:42 2014

Targeted sequencing for gene discovery and quantification using RNA CaptureSeq.
Posted Fri May 23 09:56:48 2014

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms.
Posted Fri May 23 09:56:48 2014

Noninvasive in vivo monitoring of tissue-specific global gene expression in humans.
Posted Fri May 23 09:28:50 2014

Parallel T-cell cloning and deep sequencing of human MAIT cells reveal stable oligoclonal TCRβ repertoire.
Posted Thu May 22 06:36:41 2014

Host cell responses to persistent mycoplasmas--different stages in infection of HeLa cells with Mycoplasma hominis.
Posted Wed May 7 05:50:47 2014

Stretched cell cycle model for proliferating lymphocytes.
Posted Wed May 7 05:50:47 2014

The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line.
Posted Wed Apr 23 11:56:47 2014

The majority of viral-cellular fusion transcripts in cervical carcinomas cotranscribe cellular sequences of known or predicted genes.
Posted Tue Apr 22 09:25:48 2014

The TRF1-binding protein TERB1 promotes chromosome movement and telomere rigidity in meiosis.
Posted Fri Apr 18 09:41:51 2014

Hybridization of single-stranded DNA targets to immobilized complementary DNA probes: comparison of hairpin versus linear capture probes.
Posted Thu Apr 10 08:52:42 2014

Tailoring DNA structure to increase target hybridization kinetics on surfaces.
Posted Thu Apr 10 08:52:42 2014

Cdk1 inactivation terminates mitotic checkpoint surveillance and stabilizes kinetochore attachments in anaphase
Posted Thu Apr 10 07:01:41 2014

Landscape of genomic alterations in cervical carcinomas.
Posted Wed Apr 9 08:05:31 2014

Dedifferentiation of Neurons Precedes Tumor Formation in lola Mutants.
Posted Wed Apr 9 06:59:30 2014

Isolated nuclei adapt to force and reveal a mechanotransduction pathway in the nucleus.
Posted Tue Apr 8 08:32:59 2014

Single-molecule dynamics of enhanceosome assembly in embryonic stem cells.
Posted Tue Mar 25 08:06:30 2014

Identification of Transcriptional and Metabolic Programs Related to Mammalian Cell Size.
Posted Wed Mar 19 11:50:31 2014

Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein coding RNAs.
Posted Tue Mar 18 05:07:14 2014

Visualizing spatiotemporal dynamics of multicellular cell-cycle progression.
Posted Tue Mar 11 07:53:22 2014

U1 snRNP determines mRNA length and regulates isoform expression.
Posted Tue Mar 11 07:53:22 2014

Highly Multiplexed Subcellular RNA Sequencing in Situ.
Posted Wed Mar 5 09:16:44 2014

Control of Cdc28 CDK1 by a Stress-Induced lncRNA.
Posted Fri Feb 21 11:45:39 2014

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.
Posted Wed Feb 19 10:11:58 2014

Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.
Posted Wed Feb 19 07:50:11 2014

Two independent transcription initiation codes overlap on vertebrate core promoters
Posted Wed Feb 19 07:50:11 2014

The dependence of cell-free protein synthesis in E. coli upon naturally occurring or synthetic polyribonucleotides.
Posted Tue Feb 18 11:05:23 2014

Nonstochastic Reprogramming from a Privileged Somatic Cell State.
Posted Fri Feb 14 09:44:23 2014

An antisense promoter in mouse L1 retrotransposon open reading frame-1 initiates expression of diverse fusion transcripts and limits retrotransposition.
Posted Thu Feb 13 09:14:26 2014

NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies.
Posted Wed Feb 12 08:41:30 2014

Long Noncoding RNA NEAT1-Dependent SFPQ Relocation from Promoter Region to Paraspeckle Mediates IL8 Expression upon Immune Stimuli.
Posted Wed Feb 12 08:41:30 2014

lncRNA recruits RNAi and the exosome to dynamically regulate pho1 expression in response to phosphate levels in fission yeast.
Posted Thu Feb 6 11:51:03 2014

Aprataxin resolves adenylated RNA-DNA junctions to maintain genome integrity.
Posted Thu Feb 6 06:02:36 2014

Periodic mRNA synthesis and degradation co-operate during cell cycle gene expression.
Posted Wed Feb 5 09:54:21 2014

A Tetrahymena Piwi bound to mature tRNA 3' fragments activates the exonuclease Xrn2 for RNA processing in the nucleus.
Posted Mon Feb 3 06:55:56 2014

The evolution of lncRNA repertoires and expression patterns in tetrapods.
Posted Sun Feb 2 10:50:56 2014

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs.
Posted Wed Jan 29 12:12:27 2014

Embryonic stem cell potency fluctuates with endogenous retrovirus activity.
Posted Mon Jan 27 09:36:35 2014

Circular RNAs are abundant, conserved, and associated with ALU repeats.
Posted Fri Jan 24 08:58:29 2014

Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing.
Posted Wed Jan 22 08:20:37 2014

Population-specific expression analysis (PSEA) reveals molecular changes in diseased brain.
Posted Wed Jan 22 06:54:57 2014

Large-scale mapping of branchpoints in human pre-mRNA transcripts in vivo.
Posted Mon Jan 20 02:02:44 2014

Interfacial assembly of protein-polymer nano-conjugates into stimulus-responsive biomimetic protocells.
Posted Mon Jan 20 02:02:44 2014

High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing.
Posted Sun Jan 19 07:48:28 2014

Spatial organization of RNA polymerase II inside a mammalian cell nucleus revealed by reflected light-sheet superresolution microscopy.
Posted Thu Jan 16 10:42:31 2014

Base Preferences in Non-Templated Nucleotide Incorporation by MMLV-Derived Reverse Transcriptases.
Posted Thu Jan 9 12:34:19 2014

From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.
Posted Wed Jan 8 01:36:33 2014

Cell-cycle control of developmentally regulated transcription factors accounts for heterogeneity in human pluripotent cells.
Posted Sun Jan 5 09:56:35 2014

Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing.
Posted Sun Jan 5 07:30:27 2014

High-resolution mapping of the spatial organization of a bacterial chromosome.
Posted Sun Jan 5 07:30:27 2014

Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells.
Posted Sun Jan 5 07:30:27 2014

Quantitative single-cell RNA-seq with unique molecular identifiers.
Posted Thu Dec 26 18:12:16 2013

CTLA-4 controls the thymic development of both conventional and regulatory T cells through modulation of the TCR repertoire.
Posted Thu Dec 5 11:10:58 2013

The shared genomic architecture of human nucleolar organizer regions.
Posted Thu Dec 5 11:10:58 2013

Identification of genes periodically expressed in the human cell cycle and their expression in tumors.
Posted Thu Dec 5 05:17:46 2013

The TCR repertoires of regulatory and conventional T cells specific for the same foreign antigen are distinct.
Posted Wed Dec 4 12:05:22 2013

RNA-sequencing from single nuclei.
Posted Tue Dec 3 11:16:45 2013

Non-biased and efficient global amplification of a single-cell cDNA library.
Posted Mon Nov 25 05:27:01 2013

High Dub3 Expression in Mouse ESCs Couples the G1/S Checkpoint to Pluripotency.
Posted Tue Nov 19 04:46:59 2013

Cell-cycle regulated transcription associates with DNA replication timing in yeast and human.
Posted Mon Nov 18 11:46:45 2013

Temporal dynamics and transcriptional control using single-cell gene expression analysis.
Posted Sun Nov 17 01:43:18 2013

Measuring chromatin interaction dynamics on the second time scale at single-copy genes.
Posted Tue Nov 12 08:53:15 2013

A single-molecule long-read survey of the human transcriptome.
Posted Tue Nov 12 01:38:06 2013

Emergence of macroscopic directed motion in populations of motile colloids.
Posted Mon Nov 11 00:41:42 2013

Deterministic direct reprogramming of somatic cells to pluripotency.
Posted Thu Nov 7 09:13:43 2013

Visualizing developmentally programmed endoreplication in mammals using ubiquitin oscillators.
Posted Wed Nov 6 08:28:46 2013

Mosaic copy number variation in human neurons.
Posted Tue Nov 5 08:55:12 2013

Amine-modified random primers to label probes for DNA microarrays.
Posted Thu Oct 31 08:19:55 2013

Spatial organization within a niche as a determinant of stem-cell fate.
Posted Thu Oct 31 07:48:14 2013

Multiplatform single-sample estimates of transcriptional activation.
Posted Wed Oct 30 11:51:43 2013

Differential L1 regulation in pluripotent stem cells of humans and apes.
Posted Wed Oct 30 04:14:59 2013

Drug-induced cell cycle modulation leading to cell-cycle arrest, nuclear mis-segregation, or endoreplication.
Posted Tue Oct 29 07:42:57 2013

Quantitative assessment of single-cell RNA-sequencing methods.
Posted Thu Oct 24 02:08:41 2013

Inferring tumour purity and stromal and immune cell admixture from expression data.
Posted Thu Oct 17 08:39:32 2013

PicoGreen quantitation of DNA: effective evaluation of samples pre- or post-PCR.
Posted Wed Oct 16 11:29:51 2013

Production of single-stranded DNAs by self-cleavage of rolling-circle amplification products.
Posted Mon Oct 14 10:33:27 2013

Identification of long-lived proteins reveals exceptional stability of essential cellular structures.
Posted Mon Oct 14 08:18:48 2013

Image-based transcriptomics in thousands of single human cells at single-molecule resolution.
Posted Wed Oct 9 10:23:45 2013

Mapping the fine structure of a eukaryotic promoter input-output function.
Posted Tue Oct 8 06:37:10 2013

Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation.
Posted Mon Oct 7 01:07:21 2013

Genomic organization of human transcription initiation complexes.
Posted Fri Sep 27 10:20:12 2013

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure.
Posted Fri Sep 27 06:16:04 2013

Barriers to transmission of transcriptional noise in a c-fos c-jun pathway.
Posted Thu Sep 26 11:16:41 2013

An expansive human regulatory lexicon encoded in transcription factor footprints.
Posted Wed Sep 25 08:08:50 2013

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.
Posted Wed Sep 25 07:35:28 2013

Accounting for technical noise en singlel-cell RNA-seq experiments.
Posted Wed Sep 25 07:35:28 2013

Topoisomerases facilitate transcription of long genes linked to autism.
Posted Mon Sep 23 09:54:24 2013

Processing and function of undermethylated chicken embryo fibroblast mRNA.
Posted Thu Sep 19 08:35:09 2013

Effect of undermethylation on mRNA cytoplasmic appearance and half-life.
Posted Thu Sep 19 08:20:52 2013

From cellular characteristics to disease diagnosis: uncovering phenotypes with supercells.
Posted Thu Sep 19 07:52:29 2013

Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing.
Posted Fri Sep 13 10:48:57 2013

Endonuclease V cleaves at inosines in RNA.
Posted Sun Aug 25 08:48:28 2013

Human endonuclease V is a ribonuclease specific for inosine-containing RNA.
Posted Sun Aug 25 08:48:28 2013

Novel proteomic approach (PUNCH-P) reveals cell cycle-specific fluctuations in mRNA translation.
Posted Fri Aug 23 08:52:32 2013

Comparative analyses of multi-species sequences from targeted genomic regions.
Posted Fri Aug 23 07:49:10 2013

CLP1 links tRNA metabolism to progressive motor-neuron loss.
Posted Fri Aug 23 07:41:53 2013

Ultraconserved elements in the human genome.
Posted Thu Aug 22 10:23:28 2013

Template-independent DNA synthesis activity associated with the reverse transcriptase of the long terminal repeat retrotransposon Tf1.
Posted Thu Aug 22 10:14:38 2013

The guanylation of transfer RNA: An enzymatic reaction
Posted Thu Aug 22 08:46:57 2013

Real-time dynamics of RNA polymerase II clustering in live human cells.
Posted Thu Aug 22 08:46:57 2013

Myc-driven endogenous cell competition in the early mammalian embryo.
Posted Thu Aug 8 09:13:52 2013

Box H/ACA snoRNAs are preferred substrates for the trimethylguanosine synthase in the divergent unicellular eukaryote Trichomonas vaginalis.
Posted Tue Aug 6 08:38:02 2013

Lariat sequencing in a unicellular yeast identifies regulated alternative splicing of exons that are evolutionarily conserved with humans.
Posted Wed Jul 31 08:03:40 2013

The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome.
Posted Wed Jul 31 06:51:39 2013

CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors.
Posted Mon Jul 29 08:34:27 2013

Transcriptional burst frequency and burst size are equally modulated across the human genome.
Posted Mon Jul 29 06:43:21 2013

Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene.
Posted Mon Jul 29 06:43:21 2013

Competitive interactions eliminate unfit embryonic stem cells at the onset of differentiation.
Posted Mon Jul 29 06:43:21 2013

An epigenetic trap stabilizes singular olfactory receptor expression.
Posted Mon Jul 29 06:43:21 2013

Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments.
Posted Mon Jul 29 06:43:21 2013

Subnuclear partitioning of rRNA genes between the nucleolus and nucleoplasm reflects alternative epiallelic states.
Posted Mon Jul 29 06:43:21 2013

A general method for preparing chromatin containing intact DNA.
Posted Tue Jul 16 09:46:37 2013

Cell geometric constraints induce modular gene-expression patterns via redistribution of HDAC3 regulated by actomyosin contractility.
Posted Wed Jul 10 07:57:21 2013

Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription.
Posted Tue Jul 9 10:14:42 2013

Engineering of regulated stochastic cell fate determination.
Posted Mon Jul 8 10:53:33 2013

Single-cell measurements of IgE-mediated FcεRI signaling using an integrated microfluidic platform.
Posted Mon Jul 8 09:41:05 2013

Jpx RNA Activates Xist by Evicting CTCF.
Posted Wed Jun 26 10:44:46 2013

Promoter directionality is controlled by U1 snRNP and polyadenylation signals.
Posted Wed Jun 26 09:30:26 2013

Suspended microfluidics.
Posted Tue Jun 25 06:38:01 2013

Encapsulating bacteria in agarose microparticles using microfluidics for high-throughput cell analysis and isolation.
Posted Mon Jun 24 01:06:25 2013

Target inference from collections of genomic intervals.
Posted Wed Jun 19 08:09:21 2013

Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis.
Posted Mon Jun 17 09:31:32 2013

Dgital PCR to determine the number of transcripts from single neurons after patch-clamp recording.
Posted Thu Jun 13 00:01:51 2013

linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis.
Posted Tue Jun 11 07:18:28 2013

Isolation and solubilization of proteins after TRIzol extraction of RNA and DNA from patient material following prolonged storage.
Posted Fri Jun 7 02:05:19 2013

Mass spectrometry-based metabolomics of single yeast cells.
Posted Wed Jun 5 10:58:10 2013

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells.
Posted Wed Jun 5 08:17:58 2013

Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise.
Posted Mon Jun 3 11:19:30 2013

Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs.
Posted Wed May 29 07:41:13 2013

Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development.
Posted Mon May 27 12:00:15 2013

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia.
Posted Mon May 27 11:48:58 2013

Methods for qPCR gene expression profiling applied to 1440 lymphoblastoid single cells.
Posted Wed May 22 09:05:35 2013

Widespread and extensive lengthening of 3' UTRs in the mammalian brain.
Posted Mon May 13 09:57:58 2013

Single-molecule analysis of combinatorial epigenomic states in normal and tumor cells.
Posted Fri May 10 07:59:33 2013

Generation of high-affinity DNA aptamers using an expanded genetic alphabet.
Posted Thu May 9 07:44:37 2013

The DEAH-box helicase DHX36 mediates dendritic localization of the neuronal precursor-microRNA-134.
Posted Thu May 9 07:44:37 2013

Extensive transcriptional heterogeneity revealed by isoform profiling.
Posted Wed May 8 08:14:10 2013

Signaling Pathways Differentially Affect RNA Polymerase II Initiation, Pausing, and Elongation Rate in Cells.
Posted Tue May 7 10:51:19 2013

Molecular Profiling of Synaptic Vesicle Docking Sites Reveals Novel Proteins but Few Differences between Glutamatergic and GABAergic Synapses.
Posted Tue May 7 10:51:19 2013

Population context determines cell-to-cell variability in endocytosis and virus infection.
Posted Wed May 1 22:32:03 2013

Barcoding cells using cell-surface programmable DNA-binding domains.
Posted Tue Apr 30 07:45:42 2013

Robust cellular reprogramming occurs spontaneously during liver regeneration.
Posted Tue Apr 23 07:24:55 2013

In vivo live imaging of RNA polymerase II transcription factories in primary cells.
Posted Tue Apr 23 07:24:55 2013

Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine.
Posted Mon Apr 15 07:27:28 2013

Mutations in prion-like domains in hnRNPA2B1 and hnRNPA1 cause multisystem proteinopathy and ALS.
Posted Tue Apr 9 06:41:35 2013

A Sequence in the Drosophila H3-H4 Promoter Triggers Histone Locus Body Assembly and Biosynthesis of Replication-Coupled Histone mRNAs.
Posted Mon Apr 8 11:42:23 2013

Associations with early-life socio-economic position in adult DNA methylation.
Posted Mon Apr 8 11:26:56 2013

Histone Deacetylase 2 Cell Autonomously Suppresses Excitatory and Enhances Inhibitory Synaptic Function in CA1 Pyramidal Neurons.
Posted Mon Apr 8 11:26:56 2013

Single-cell dynamics of genome-nuclear lamina interactions.
Posted Thu Apr 4 06:20:54 2013

Protein instability following transport or storage on dry ice.
Posted Mon Apr 1 05:05:50 2013

RNA polymerase II acts as an RNA-dependent RNA polymerase to extend and destabilize a non-coding RNA.
Posted Mon Mar 25 08:09:37 2013

Nuclear translation visualized by ribosome-bound nascent chain puromycylation.
Posted Tue Mar 19 04:53:16 2013

Translational profiling of hypocretin neurons identifies candidate molecules for sleep regulation.
Posted Tue Mar 12 06:53:14 2013

MacroH2A histone variants act as a barrier upon reprogramming towards pluripotency.
Posted Thu Mar 7 11:12:26 2013

Single-cell chemical lysis on microfluidic chips with arrays of microwells.
Posted Tue Mar 5 06:45:30 2013

Precise maps of RNA polymerase reveal how promoters direct initiation and pausing.
Posted Wed Feb 27 10:00:53 2013

Cleavage-based signal amplification of RNA.
Posted Tue Feb 26 07:04:02 2013

Single-cell and subcellular pharmacokinetic imaging allows insight into drug action in vivo.
Posted Tue Feb 26 07:04:02 2013

RNAi triggered by specialized machinery silences developmental genes and retrotransposons.
Posted Wed Feb 20 07:24:43 2013

Single-molecule analysis of gene expression using two-color RNA labeling in live yeast.
Posted Tue Feb 19 08:11:42 2013

In Vivo Epigenomic Profiling of Germ Cells Reveals Germ Cell Molecular Signatures.
Posted Tue Feb 12 11:49:12 2013

Pyramidal neurons derived from human pluripotent stem cells integrate efficiently into mouse brain circuits in vivo.
Posted Tue Feb 12 11:49:12 2013

Towards practical, high-capacity, low-maintenance information storage in synthesized DNA.
Posted Thu Feb 7 11:41:36 2013

Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data.
Posted Thu Feb 7 07:12:52 2013

Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA.
Posted Thu Jan 31 08:18:24 2013

Single-neuron RNA-Seq: technical feasibility and reproducibility.
Posted Mon Jan 28 07:57:51 2013

Next generation sequencing for TCR repertoire profiling: platform-specific features and correction algorithms.
Posted Mon Jan 21 09:11:45 2013

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression.
Posted Wed Jan 16 12:34:38 2013

Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching.
Posted Wed Jan 16 12:34:38 2013

Population transcriptomics with single-cell resolution: A new field made possible by microfluidics.
Posted Wed Jan 16 12:34:38 2013

Negligible immunogenicity of terminally differentiated cells derived from induced pluripotent or embryonic stem cells.
Posted Wed Jan 16 12:23:04 2013

Generation of rejuvenated antigen-specific T cells by reprogramming to pluripotency and redifferentiation.
Posted Tue Jan 15 12:13:27 2013

Differential analysis of gene regulation at transcript resolution with RNA-seq.
Posted Sun Jan 13 11:37:04 2013

Re-capping the message.
Posted Fri Jan 11 05:37:58 2013

Two methods for full-length RNA sequencing for low quantities of cells and single cells.
Posted Wed Jan 9 09:44:47 2013

cDNA normalization by hydroxyapatite chromatography to enrich transcriptome diversity in RNA-seq applications.
Posted Tue Jan 8 10:04:29 2013

Trehalose-enhanced isolation of neuronal sub-types from adult mouse brain.
Posted Tue Dec 11 08:36:09 2012

Transcriptome transfer produces a predictable cellular phenotype.
Posted Tue Dec 11 07:51:54 2012

Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells.
Posted Mon Dec 10 07:39:46 2012

Extensive somatic L1 retrotransposition in colorectal tumors.
Posted Fri Dec 7 07:27:23 2012

Chromatin conformation governs T-cell receptor Jβ gene segment usage.
Posted Wed Dec 5 10:31:55 2012

Genomewide characterization of non-polyadenylated RNAs.
Posted Mon Dec 3 07:52:08 2012

Cell cycle gene-specific control of transcription has a critical role in proliferation of primordial germ cells.
Posted Mon Dec 3 07:52:08 2012

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.
Posted Wed Nov 21 09:30:33 2012

Stable intronic sequence RNA (sisRNA), a new class of noncoding RNA from the oocyte nucleus of Xenopus tropicalis.
Posted Wed Nov 21 08:54:51 2012

RNA Polymerase II Collision Interrupts Convergent Transcription.
Posted Mon Nov 12 12:02:36 2012

Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors.
Posted Tue Nov 6 09:30:27 2012

In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination.
Posted Tue Nov 6 09:30:27 2012

Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions.
Posted Wed Oct 24 09:08:56 2012

Single-Cell Expression Analyses during Cellular Reprogramming Reveal an Early Stochastic and a Late Hierarchic Phase.
Posted Thu Oct 18 09:52:00 2012

A noncoding RNA regulates the neurogenin1 gene locus during mouse neocortical development.
Posted Wed Oct 17 07:45:53 2012

Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat.
Posted Wed Oct 17 07:45:53 2012

Mammalian NUMT insertion is non-random.
Posted Wed Oct 10 09:26:27 2012

Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution.
Posted Thu Oct 4 08:56:24 2012

Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment.
Posted Tue Sep 25 09:06:00 2012

Transcription of Two Long Noncoding RNAs Mediates Mating-Type Control of Gametogenesis in Budding Yeast.
Posted Tue Sep 25 08:49:25 2012

Shaping acoustic fields as a toolset for microfluidic manipulations in diagnostic technologies.
Posted Wed Sep 19 02:11:10 2012

A paradoxical teratogenic mechanism for retinoic acid.
Posted Mon Sep 10 08:14:44 2012

Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in leishmania.
Posted Thu Sep 6 05:20:37 2012

Human intron-encoded Alu RNAs are processed and packaged into Wdr79-associated nucleoplasmic box H/ACA RNPs.
Posted Wed Sep 5 09:17:33 2012

A New Approach to Simultaneously Quantify Both TCR α- and β-Chain Diversity after Adoptive Immunotherapy.
Posted Tue Sep 4 10:15:25 2012

Mouse ooplasm confers context-specific reprogramming capacity.
Posted Thu Aug 30 09:53:14 2012

Zipf-scaling behavior in the immune system.
Posted Thu Aug 30 09:53:14 2012

RT-PCR without RNA isolation.
Posted Sun Aug 26 01:35:56 2012

Quantification of mRNA in single cells and modelling of RT-qPCR induced noise.
Posted Sun Aug 26 01:03:13 2012

Regulation of noise in the expression of a single gene.
Posted Sat Aug 25 23:16:24 2012

Stochastic gene expression in a single cell.
Posted Sat Aug 25 23:16:24 2012

Variability and memory of protein levels in human cells.
Posted Wed Aug 22 00:02:08 2012

Single-molecule transcript counting of stem-cell markers in the mouse intestine.
Posted Tue Aug 21 01:17:38 2012

Unbiased Analysis of TCRα/β Chains at the Single-Cell Level in Human CD8(+) T-Cell Subsets.
Posted Wed Aug 15 11:46:37 2012

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.
Posted Wed Aug 8 11:09:36 2012

A tissue-engineered jellyfish with biomimetic propulsion.
Posted Tue Aug 7 22:12:12 2012

Dorsal activity of maternal squint is mediated by a non-coding function of the RNA.
Posted Mon Aug 6 08:59:33 2012

Transcription initiation by human RNA polymerase II visualized at single-molecule resolution.
Posted Sat Aug 4 06:59:10 2012

Fluorescence Fluctuation Spectroscopy Enables Quantitative Imaging of Single mRNAs in Living Cells.
Posted Thu Aug 2 09:08:49 2012

Highly diverse TCRα chain repertoire of pre-immune CD8⁺ T cells reveals new insights in gene recombination.
Posted Tue Jul 31 13:16:06 2012

Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells.
Posted Fri Jul 13 09:09:31 2012

Comparison of reverse transcriptases in gene expression analysis.
Posted Mon May 28 10:52:12 2012

Defining cell populations with single-cell gene expression profiling: correlations and identification of astrocyte subpopulations.
Posted Mon May 21 05:59:18 2012

Direct multiplexed measurement of gene expression with color-coded probe pairs.
Posted Sat May 19 08:34:07 2012

Microfluidic high-throughput encapsulation and hydrodynamic self-sorting of single cells.
Posted Fri May 18 02:29:35 2012

Nuclear Envelope Budding Enables Large Ribonucleoprotein Particle Export during Synaptic Wnt Signaling.
Posted Wed May 16 02:26:22 2012

Droplet microfluidic technology for single-cell high-throughput screening.
Posted Mon May 14 05:28:19 2012

Massively parallel single-molecule and single-cell emulsion reverse transcription polymerase chain reaction using agarose droplet microfluidics.
Posted Sun May 13 06:59:19 2012

Drop-based microfluidic devices for encapsulation of single cells.
Posted Sat May 12 07:17:47 2012

Integrating whole transcriptome assays on a lab-on-a-chip for single cell gene profiling.
Posted Sat May 12 06:53:34 2012

Alternatives for harvesting cells grown on microcarriers: effects on subsequent attachment and growth.
Posted Sat May 12 06:53:34 2012

Observation of spatial propagation of amyloid assembly from single nuclei.
Posted Wed May 9 11:21:53 2012

Live imaging of nascent RNA dynamics reveals distinct types of transcriptional pulse regulation.
Posted Wed May 9 11:21:53 2012

Monitoring single-cell bioenergetics via the coarsening of emulsion droplets.
Posted Wed May 9 11:21:53 2012

PCR amplification and genetic analysis in a microwell cell culturing chip.
Posted Mon May 7 07:26:26 2012

Sequestration of highly expressed mRNAs in cytoplasmic granules, P-bodies, and stress granules enhances cell viability.
Posted Mon May 7 07:26:26 2012

Single-molecule mechanical identification and sequencing.
Posted Mon May 7 07:26:26 2012

Imaging individual mRNA molecules using multiple singly labeled probes.
Posted Sun May 6 12:42:04 2012

Single-RNA counting reveals alternative modes of gene expression in yeast.
Posted Sun May 6 12:42:04 2012

Stochastic mRNA synthesis in mammalian cells.
Posted Thu Apr 19 13:59:28 2012

Biocompatible surfactants for water-in-fluorocarbon emulsions.
Posted Thu Apr 19 13:59:28 2012

SlipChip.
Posted Sat Mar 17 08:30:46 2012

Digital PCR on a SlipChip.
Posted Sat Mar 17 08:30:46 2012

Robust growth of Escherichia coli.
Posted Mon Mar 12 11:00:06 2012

Apparent non-canonical trans-splicing is generated by reverse transcriptase in vitro.
Posted Mon Mar 12 09:20:50 2012

1-Million droplet array with wide-field fluorescence imaging for digital PCR.
Posted Sun Mar 11 13:44:42 2012

“One cell-one well”: a new approach to inkjet printing single cell microarrays.
Posted Fri Mar 2 11:58:00 2012

Drop-on-demand single cell isolation and total RNA analysis.
Posted Thu Mar 1 11:20:44 2012

Practical, microfabrication-free device for single-cell isolation.
Posted Thu Mar 1 10:47:05 2012

A microfluidic processor for gene expression profiling of single human embryonic stem cells.
Posted Tue Feb 28 11:35:42 2012

Highly parallel genome-wide expression analysis of single Mammalian cells.
Posted Tue Feb 28 10:54:22 2012

Method for improved Illumina sequencing library preparation using NuGEN Ovation RNA-Seq System.
Posted Mon Feb 27 11:00:25 2012

Chemical transfection of cells in picoliter aqueous droplets in fluorocarbon oil.
Posted Mon Feb 27 11:00:25 2012

Tracking lineages of single cells in lines using a microfluidic device.
Posted Tue Feb 21 09:29:35 2012

Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells.
Posted Mon Feb 20 13:07:33 2012

Microfluidic isolation and transcriptome analysis of serum microvesicles
Posted Thu Feb 16 08:19:53 2012

An end-healing enzyme from Clostridium thermocellum with 5' kinase, 2',3' phosphatase, and adenylyltransferase activities.
Posted Thu Feb 16 02:51:42 2012

Reconstituting bacterial RNA repair and modification in vitro.
Posted Thu Feb 16 02:51:42 2012

Bacterial Hen1 is a 3' terminal RNA ribose 2'-O-methyltransferase component of a bacterial RNA repair cassette.
Posted Thu Feb 16 02:51:42 2012

5'-RNA self-capping from guanosine diphosphate.
Posted Mon Feb 13 11:12:17 2012

Cell-Type-Based Analysis of MicroRNA Profiles in the Mouse Brain
Posted Mon Feb 6 13:43:31 2012

Title: A race model for singular olfactory receptor expression.
Posted Wed Feb 1 11:07:59 2012

High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment.
Posted Mon Jan 30 08:51:08 2012

Age, microbiota, and T cells shape diverse individual IgA repertoires in the intestine.
Posted Mon Jan 30 08:51:08 2012

RTP family members induce functional expression of mammalian odorant receptors.
Posted Mon Jan 16 04:18:53 2012

Differentially expressed transcripts from phenotypically identified olfactory sensory neurons.
Posted Mon Jan 16 04:18:53 2012

Rigorous and thorough bioinformatic analyses of olfactory receptor promoters confirm enrichment of O/E and homeodomain binding sites but reveal no new common motifs.
Posted Mon Jan 16 03:50:05 2012

Promoter architecture of mouse olfactory receptor genes.
Posted Mon Jan 16 03:50:05 2012

Counting absolute numbers of molecules using unique molecular identifiers.
Posted Wed Jan 11 12:11:27 2012

Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes.
Posted Wed Jan 11 12:11:27 2012

A Role for Differential Variable Gene Pairing in Creating T Cell Receptors Specific for Unique Major Histocompatibility Ligands.
Posted Wed Nov 30 07:50:21 2011

Synthesis, base pairing properties and trans-lesion synthesis by reverse transcriptases of oligoribonucleotides containing the oxidatively damaged base 5-hydroxycytidine.
Posted Mon Nov 28 11:45:53 2011

Deep-transcriptome and ribonome sequencing redefines the molecular networks of pluripotency and the extracellular space in human embryonic stem cells.
Posted Wed Nov 23 05:34:30 2011

Regulation of the probability of mouse odorant receptor gene choice.
Posted Wed Nov 16 13:11:36 2011

Improved quantitative real-time RT-PCR for expression profiling of individual cells.
Posted Mon Nov 14 11:35:56 2011

PCR inhibition by reverse transcriptase leads to an overestimation of amplification efficiency.
Posted Mon Nov 14 11:35:56 2011

Sex determination: primitive Y chromosomes in fish.
Posted Mon Oct 31 12:14:06 2011

Elucidation of the small RNA component of the transcriptome.
Posted Mon Oct 31 12:14:06 2011

Transposon-free regions in mammalian genomes.
Posted Mon Oct 31 12:14:06 2011

Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals.
Posted Mon Oct 31 11:48:25 2011

The proteomes of transcription factories containing RNA polymerases I, II or III.
Posted Mon Oct 31 07:49:17 2011

High TCR diversity ensures optimal function and homeostasis of Foxp3(+) regulatory Tcells.
Posted Fri Oct 28 12:53:28 2011

Exogenous Stimuli Maintain Intraepithelial Lymphocytes via Aryl Hydrocarbon Receptor Activation.
Posted Fri Oct 28 02:10:58 2011

Multifunctional Picoliter Droplet Manipulation Platform and its Application in Single Cell Analysis.
Posted Tue Oct 11 04:41:16 2011

Independent localization of MAP2, CaMKIIα and β-actin RNAs in low copy numbers.
Posted Tue Oct 11 04:41:16 2011

Antibodies from patients with Parkinson's disease react with protein modified by dopamine oxidation.
Posted Fri Sep 16 04:25:28 2011

Mechanisms of dendritic mRNA transport and its role in synaptic tagging.
Posted Mon Sep 12 07:22:11 2011

PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters.
Posted Thu Sep 1 10:38:12 2011

Quantitative impact of thymic selection on Foxp3+ and Foxp3− subsets of self-peptide/MHC class II-specific CD4+ T cells.
Posted Wed Aug 31 01:38:37 2011

Trehalose Renders the Dauer Larva of Caenorhabditis elegans Resistant to Extreme Desiccation.
Posted Wed Aug 10 02:43:28 2011

RNA mimics of green fluorescent protein.
Posted Wed Aug 10 02:43:28 2011

High-throughput mapping of the promoters of the mouse olfactory receptor genes reveals a new type of mammalian promoter and provides insight into olfactory receptor gene regulation.
Posted Fri Aug 5 06:46:18 2011

Generation of a nicking enzyme that stimulates site-specific gene conversion from the I-AniI LAGLIDADG homing endonuclease.
Posted Fri Aug 5 06:20:26 2011

High-throughput microfluidic single-cell RT-qPCR.
Posted Fri Aug 5 06:20:26 2011

Gene expression analysis of plant host-pathogen interactions by SuperSAGE.
Posted Tue Jul 5 10:34:44 2011

Type III restriction enzymes cleave DNA by long-range interaction between sites in both head-to-head and tail-to-tail inverted repeat
Posted Tue Jul 5 10:34:44 2011

Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis.
Posted Tue Jul 5 10:34:44 2011

Recognition of the peripheral self by naturally arising CD25+ CD4+ T cell receptors.
Posted Wed Jun 1 12:12:22 2011

Comparison of T-cell receptor Jβ gene usage in spleen cells of different mouse strains.
Posted Mon May 30 11:19:12 2011

Food restriction enhances visual cortex plasticity in adulthood.
Posted Fri May 20 11:35:37 2011

Selection of T cell receptors with a recurrent CDR3β peptide-contact motif within the repertoire of alloreactive CD8 T cells.
Posted Fri May 20 02:06:44 2011

Structural analysis of 5'-mRNA-cap interactions with the human AGO2 MID domain.
Posted Sun May 8 12:40:11 2011

Acoustic microstreaming increases the efficiency of reverse transcription reactions comprising single-cell quantities of RNA.
Posted Wed Apr 20 22:33:06 2011

A direct estimate of the human alphabeta T cell receptor diversity.
Posted Wed Apr 13 11:37:04 2011

A Mechanism for TCR Sharing between T Cell Subsets and Individuals Revealed by Pyrosequencing.
Posted Thu Apr 7 10:02:51 2011

Retrospective birth dating of cells in humans.
Posted Sat Mar 19 01:05:24 2011

DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration.
Posted Sat Mar 19 01:05:24 2011

Cytoplasmic Intron Sequence-Retaining Transcripts Can Be Dendritically Targeted via ID Element Retrotransposons.
Posted Sat Mar 19 01:05:24 2011

Phosphorylation Regulates OLIG2 Cofactor Choice and the Motor Neuron-Oligodendrocyte Fate Switch.
Posted Sat Mar 19 01:05:24 2011

Genome-wide analysis of promoter architecture in Drosophila melanogaster.
Posted Mon Feb 28 07:54:37 2011

Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes.
Posted Sat Feb 26 10:55:09 2011

Amplification of RNA transcripts using terminal continuation.
Posted Sat Feb 26 10:32:53 2011

Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerases.
Posted Sat Feb 26 10:32:53 2011

Single-cell transcript analysis of pancreas development.
Posted Thu Feb 17 02:40:04 2011

Single cell transcriptional profiling reveals heterogeneity of human induced pluripotent stem cells.
Posted Thu Feb 17 02:40:04 2011

Genetic and biochemical analysis of the functional domains of yeast tRNA ligase.
Posted Tue Feb 15 05:50:34 2011

HSPC117 is the essential subunit of a human tRNA splicing ligase complex.
Posted Tue Feb 15 05:50:34 2011

A unique chromatin signature uncovers early developmental enhancers in humans.
Posted Thu Feb 10 10:52:34 2011

Reverse transcriptase template switching and false alternative transcripts.
Posted Thu Feb 10 06:31:55 2011

Paired analysis of TCRα and TCRβ chains at the single-cell level in mice.
Posted Wed Feb 9 10:36:38 2011

PCR amplification from single DNA molecules on magnetic beads in emulsion: application for high-throughput screening of transcription factor targets.
Posted Wed Feb 9 10:10:35 2011

Single-molecule reverse transcription polymerase chain reaction using water-in-oil emulsion.
Posted Wed Feb 9 10:10:35 2011

Efficient and specific knockdown of small non-coding RNAs in mammalian cells and in mice.
Posted Wed Feb 9 10:10:35 2011

Reverse transcriptases can clamp together nucleic acids strands with two complementary bases at their 3'-termini for initiating DNA synthesis.
Posted Wed Feb 9 09:48:00 2011

Minor change, major difference: divergent functions of highly conserved cis-regulatory elements subsequent to whole genome duplication events.
Posted Wed Feb 9 09:48:00 2011

An improved one-tube RT-PCR protocol for analyzing single-cell gene expression in individual mammalian cells.
Posted Thu Feb 3 04:54:41 2011

A novel emulsion mixture for in vitro compartmentalization of transcription and translation in the rabbit reticulocyte system.
Posted Thu Feb 3 02:24:54 2011

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.
Posted Thu Jan 20 13:48:08 2011

A genomic code for nucleosome positioning.
Posted Fri Jan 14 10:31:24 2011

Intergenic transcription causes repression by directing nucleosome assembly.
Posted Fri Jan 14 10:31:24 2011

A novel phosphodiesterase from cultured tobacco cells.
Posted Fri Jan 14 10:11:59 2011

A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries.
Posted Thu Jan 13 07:25:27 2011

DNA purification and isolation using a solid-phase.
Posted Thu Jan 13 07:25:27 2011

The ends of a large RNA molecule are necessarily close.
Posted Thu Jan 13 06:23:34 2011

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is ‘dark matter’ un-annotated RNA
Posted Tue Jan 11 13:05:41 2011

Amplification of cDNA ends based on template-switching effect and step-out PCR.
Posted Sun Jan 9 15:08:12 2011

Quantitative analysis of NF1 and OMGP gene transcripts in sporadic gliomas, sporadic meningiomas and neurofibromatosis type 1-associated plexiform neurofibromas.
Posted Sun Jan 9 15:08:12 2011

Nuclear snRNA and nuclear function (discovery of 5' cap structures in RNA).
Posted Sun Jan 9 15:08:12 2011

CapSelect: a highly sensitive method for 5' CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs.
Posted Sun Jan 9 15:08:12 2011

Aberrant mRNAs with extended 3’ UTRs are substrates for rapid degradation by mRNA surveillance.
Posted Sun Jan 9 15:08:12 2011

The balance sheet for transcription: an analysis of nuclear RNA metabolism in mammalian cells.
Posted Sun Jan 9 15:08:12 2011

High-fidelity mRNA amplification for gene profiling.
Posted Sun Jan 9 15:08:12 2011

Thermodynamics-structure relationship of single mismatches in RNA/DNA duplexes.
Posted Sun Jan 9 15:08:12 2011

The olfactory receptor gene superfamily: data mining, classification, and nomenclature.
Posted Sun Jan 9 15:08:12 2011

A simple and reliable 5'-RACE approach.
Posted Sun Jan 9 15:08:12 2011

Mouse-human orthology relationships in an olfactory receptor gene cluster.
Posted Sun Jan 9 15:08:12 2011

Genomic analysis of orthologous mouse and human olfactory receptor loci.
Posted Sun Jan 9 15:08:12 2011

Increased yield of PCR products by addition of T4 gene 32 protein to the SMART PCR cDNA synthesis system.
Posted Sun Jan 9 15:08:12 2011

Molecular recognition of DNA by small molecules.
Posted Sun Jan 9 15:08:12 2011

Detection of the 5'-cap structure of messenger RNAs with the use of the cap-jumping approach.
Posted Sun Jan 9 15:08:12 2011

Genomic analysis of the olfactory receptor region of the mouse and human T-cell receptor alpha/delta loci.
Posted Sun Jan 9 15:08:12 2011

The olfactory receptor gene superfamily of the mouse.
Posted Sun Jan 9 15:08:12 2011

A highly efficient method for long-chain cDNA synthesis using trehalose and betaine.
Posted Sun Jan 9 15:08:12 2011

Extra-long first-strand cDNA synthesis.
Posted Sun Jan 9 15:08:12 2011

A Drosophila fragile X protein interacts with components of RNAi and ribosomal proteins.
Posted Sun Jan 9 15:08:12 2011

Super-enzyme patents get their day in court.
Posted Sun Jan 9 15:08:12 2011

RNA Amplification in Brain Tissues.
Posted Sun Jan 9 15:08:12 2011

Complex transcription and splicing of odorant receptor genes.
Posted Sun Jan 9 15:08:12 2011

Mapping of transcription start sites by direct sequencing of SMART RACE products.
Posted Sun Jan 9 15:08:12 2011

Digital genotyping and haplotyping with polymerase colonies.
Posted Sun Jan 9 15:08:12 2011

Fluorescent in situ sequencing on polymerase colonies.
Posted Sun Jan 9 15:08:12 2011

The bases of the nucleic acids of some bacterial and animal viruses: the occurrence of 5-hydroxymethylcytosine.
Posted Sun Jan 9 15:08:12 2011

Human beta-globin mRNAs that harbor a nonsense codon are degraded in murine erythroid tissues to intermediates lacking regions of exon I or exons I and II that have a cap-like structure at the 5' termini.
Posted Sun Jan 9 15:08:12 2011

Use of alkyltrimethylammonium bromides for the isolation of ribo- and desoxyribo-nucleic acids.
Posted Sun Jan 9 15:08:12 2011

Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels.
Posted Sun Jan 9 15:08:12 2011

High-accuracy amplification of nanogram total RNA amounts for gene profiling.
Posted Sun Jan 9 15:08:12 2011

Effects of sodium ions on DNA duplex oligomers: improved predictions of melting temperatures.
Posted Sun Jan 9 15:08:12 2011

Genetic structure of the purebred domestic dog.
Posted Sun Jan 9 15:08:12 2011

SMART amplification combined with cDNA size fractionation in order to obtain large full-length clones.
Posted Sun Jan 9 15:08:12 2011

Separable enhancer sequences regulate the expression of the neural bHLH transcription factor neurogenin 1.
Posted Sun Jan 9 15:08:12 2011

Regional patterns of gene expression in human and chimpanzee brains.
Posted Sun Jan 9 15:08:12 2011

Gene loops juxtapose promoters and terminators in yeast.
Posted Sun Jan 9 15:08:12 2011

Molecular basis for catecholaminergic neuron diversity.
Posted Sun Jan 9 15:08:12 2011

High-throughput microarray detection of olfactory receptor gene expression in the mouse.
Posted Sun Jan 9 15:08:12 2011

Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos.
Posted Sun Jan 9 15:08:12 2011

2′,3′-cyclic phosphates and nontemplated nucleotides at the 3′ end of spliceosomal U6 small nuclear RNAs.
Posted Sun Jan 9 15:08:12 2011

Determination of the capped site sequence of mRNA based on the detection of cap-dependent nucleotide addition using an anchor ligation method.
Posted Sun Jan 9 15:08:12 2011

The human L1 promoter: variable transcription initiation sites and a major impact of upstream flanking sequence on promoter activity.
Posted Sun Jan 9 15:08:12 2011

Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa.
Posted Sun Jan 9 15:08:12 2011

Reevaluation and reduction of a PCR bias caused by reannealing of templates.
Posted Sun Jan 9 15:08:12 2011

Structure-function analysis of the yeast NAD+-dependent tRNA 2'-phosphotransferase Tpt1.
Posted Sun Jan 9 15:08:12 2011

The biotin-streptavidin interaction can be reversibly broken using water at elevated temperatures.
Posted Sun Jan 9 15:08:12 2011

Identification of a deoxyribonuclease I inhibitor from a phage-peptide library.
Posted Sun Jan 9 15:08:12 2011

Cell type-specific gene expression of midbrain dopaminergic neurons reveals molecules involved in their vulnerability and protection.
Posted Sun Jan 9 15:08:12 2011

Exogenous AdoMet and its analogue sinefungin differentially influence DNA cleavage by R.EcoP15I--usefulness in SAGE.
Posted Sun Jan 9 15:08:12 2011

Genome sequencing in microfabricated high-density picolitre reactors.
Posted Sun Jan 9 15:08:12 2011

Accurate multiplex polony sequencing of an evolved bacterial genome.
Posted Sun Jan 9 15:08:12 2011

The solution to the streptavidin-biotin paradox: the influence of history on the strength of single molecular bonds.
Posted Sun Jan 9 15:08:12 2011

Coating of poly(dimethylsiloxane) with n-dodecyl-beta-D-maltoside to minimize nonspecific protein adsorption.
Posted Sun Jan 9 15:08:12 2011

Expressible molecular colonies.
Posted Sun Jan 9 15:08:12 2011

Vertebrate neurogenin evolution: long-term maintenance of redundant duplicates.
Posted Sun Jan 9 15:08:12 2011

Nearest-neighbor thermodynamics of deoxyinosine pairs in DNA duplexes.
Posted Sun Jan 9 15:08:12 2011

Sexually dimorphic expression of the X-linked gene Eif2s3x mRNA but not protein in mouse brain.
Posted Sun Jan 9 15:08:12 2011

The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C.
Posted Sun Jan 9 15:08:12 2011

The RIN: an RNA integrity number for assigning integrity values to RNA measurements.
Posted Sun Jan 9 15:08:12 2011

Long-range polony haplotyping of individual human chromosome molecules.
Posted Sun Jan 9 15:08:12 2011

Sequencing the termini of capped viral RNA by 5′-3′ ligation and PCR.
Posted Sun Jan 9 15:08:12 2011

Stabilization of Enzymes against Thermal Stress and Freeze-Drying by Mannosylglycerate.
Posted Sun Jan 9 15:08:12 2011

An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis.
Posted Sun Jan 9 15:08:12 2011

Effects of visual experience on activity-dependent gene regulation in cortex.
Posted Sun Jan 9 15:08:12 2011

Differentially expressed transcripts from phenotypically identified olfactory sensory neurons.
Posted Sun Jan 9 15:08:12 2011

Gene expression changes and molecular pathways mediating activity-dependent plasticity in visual cortex.
Posted Sun Jan 9 15:08:12 2011

Microfluidic single-cell mRNA isolation and analysis.
Posted Sun Jan 9 15:08:12 2011

Transcriptional regulation of neurogenesis in the olfactory epithelium.
Posted Sun Jan 9 15:08:12 2011

Reverse transcription using random pentadecamer primers increases yield and quality of resulting cDNA.
Posted Sun Jan 9 15:08:12 2011

tRNAHis guanylyltransferase catalyzes a 3′-5′ polymerization reaction that is distinct from G₋₁ addition.
Posted Sun Jan 9 15:08:12 2011

Amplification of complex gene libraries by emulsion PCR.
Posted Sun Jan 9 15:08:12 2011

BEAMing: single-molecule PCR on microparticles in water-in-oil emulsion.
Posted Sun Jan 9 15:08:12 2011

Directed evolution by in vitro compartmentalization.
Posted Sun Jan 9 15:08:12 2011

Organization and mobility of water in amorphous and crystalline trehalose.
Posted Sun Jan 9 15:08:12 2011

Interchromosomal interactions and olfactory receptor choice.
Posted Sun Jan 9 15:08:12 2011

Amplified RNA synthesized from limited quantities of heterogeneous cDNA.
Posted Sun Jan 9 15:08:12 2011

Identification of potential regulatory motifs in odorant receptor genes by analysis of promoter sequences.
Posted Sun Jan 9 15:08:12 2011

Dynamic assembly of primers on nucleic acid templates.
Posted Sun Jan 9 15:08:12 2011

Gene expression profiling of single cells on large-scale oligonucleotide arrays.
Posted Sun Jan 9 15:08:12 2011

Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines.
Posted Sun Jan 9 15:08:12 2011

PCR-suppression effect: kinetic analysis and application to representative or long-molecule biased PCR-based amplification of complex samples.
Posted Sun Jan 9 15:08:12 2011

Counting low-copy number proteins in a single cell.
Posted Sun Jan 9 15:08:12 2011

Biochemical and genetic analysis of RNA cap guanine-N2 methyltransferases from Giardia lamblia and Schizosaccharomyces pombe.
Posted Sun Jan 9 15:08:12 2011

Differential impact of Lhx2 deficiency on expression of class I and class II odorant receptor genes in mouse.
Posted Sun Jan 9 15:08:12 2011

5′-tailed sequencing primers improve sequencing quality of PCR products.
Posted Sun Jan 9 15:08:12 2011

A single IGF1 allele is a major determinant of small size in dogs.
Posted Sun Jan 9 15:08:12 2011

Differential gene expression between sensory neocortical areas: potential roles for Ten_m3 and Bcl6 in patterning visual and somatosensory pathways.
Posted Sun Jan 9 15:08:12 2011

Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray.
Posted Sun Jan 9 15:08:12 2011

A mutation in the myostatin gene increases muscle mass and enhances racing performance in heterozygote dogs.
Posted Sun Jan 9 15:08:12 2011

Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy.
Posted Sun Jan 9 15:08:12 2011

Promotor elements governing the clustered expression pattern of odorant receptor genes.
Posted Sun Jan 9 15:08:12 2011

Screening of genes associated with termination of the critical period of visual cortex plasticity in rats.
Posted Sun Jan 9 15:08:12 2011

Artifactual detection of biotin on histones by streptavidin.
Posted Sun Jan 9 15:08:12 2011

Genomic analysis of human microRNA transcripts.
Posted Sun Jan 9 15:08:12 2011

Neurogenin and NeuroD direct transcriptional targets and their regulatory enhancers.
Posted Sun Jan 9 15:08:12 2011

Prominent roles for odorant receptor coding sequences in allelic exclusion.
Posted Sun Jan 9 15:08:12 2011

Deletion of the core-H region in mice abolishes the expression of three proximal odorant receptor genes in cis.
Posted Sun Jan 9 15:08:12 2011

The olfactory vector hypothesis of neurodegenerative disease: is it viable?
Posted Sun Jan 9 15:08:12 2011

Single-molecule DNA sequencing of a viral genome.
Posted Sun Jan 9 15:08:12 2011

High-throughput single copy DNA amplification and cell analysis in engineered nanoliter droplets.
Posted Sun Jan 9 15:08:12 2011

The new paradigm of flow cell sequencing.
Posted Sun Jan 9 15:08:12 2011

Long-range, high-throughput haplotype determination via haplotype-fusion PCR and ligation haplotyping.
Posted Sun Jan 9 15:08:12 2011

Chum-RNA allows preparation of a high-quality cDNA library from a single-cell quantity of mRNA without PCR amplification.
Posted Sun Jan 9 15:08:12 2011

Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing.
Posted Sun Jan 9 15:08:12 2011

Sponge genes provide new insight into the evolutionary origin of the neurogenic circuit.
Posted Sun Jan 9 15:08:12 2011

PU.1 expression is modulated by the balance of functional sense and antisense RNAs regulated by a shared cis-regulatory element.
Posted Sun Jan 9 15:08:12 2011

Genetic control of experience-dependent plasticity in the visual cortex.
Posted Sun Jan 9 15:08:12 2011

Visual experience regulates Kv3.1b and Kv3.2 expression in developing rat visual cortex.
Posted Sun Jan 9 15:08:12 2011

Global alignment of multiple protein interaction networks with application to functional orthology detection.
Posted Sun Jan 9 15:08:12 2011

Unique substrate spectrum and PCR application of Nanoarchaeum equitans family B DNA polymerase.
Posted Sun Jan 9 15:08:12 2011

Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs.
Posted Sun Jan 9 15:08:12 2011

A procedure for highly specific, sensitive, and unbiased whole-genome amplification.
Posted Sun Jan 9 15:08:12 2011

Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood.
Posted Sun Jan 9 15:08:12 2011

DcpS as a therapeutic target for spinal muscular atrophy.
Posted Sun Jan 9 15:08:12 2011

Structural explanation for the role of Mn2+ in the activity of phi6 RNA-dependent RNA polymerase.
Posted Sun Jan 9 15:08:12 2011

Delayed plasticity of inhibitory neurons in developing visual cortex.
Posted Sun Jan 9 15:08:12 2011

Mutations of LRTOMT, a fusion gene with alternative reading frames, cause nonsyndromic deafness in humans.
Posted Sun Jan 9 15:08:12 2011

Ultraconserved elements: analyses of dosage sensitivity, motifs and boundaries.
Posted Sun Jan 9 15:08:12 2011

Alternative isoform regulation in human tissue transcriptomes.
Posted Sun Jan 9 15:08:12 2011

Accurate whole human genome sequencing using reversible terminator chemistry.
Posted Sun Jan 9 15:08:12 2011

A novel conserved evx1 enhancer links spinal interneuron morphology and cis-regulation from fish to mammals.
Posted Sun Jan 9 15:08:12 2011

Odorant receptor (OR) gene choice is biased and non-clonal in two olfactory placode cell lines, and OR RNA is nuclear prior to differentiation of these lines.
Posted Sun Jan 9 15:08:12 2011

A novel, enigmatic histone modification: biotinylation of histones by holocarboxylase synthetase.
Posted Sun Jan 9 15:08:12 2011

Regulation of neural macroRNAs by the transcriptional repressor REST.
Posted Sun Jan 9 15:08:12 2011

Large number of ultraconserved elements were already present in the jawed vertebrate ancestor.
Posted Sun Jan 9 15:08:12 2011

Novel mutations in Moloney Murine Leukemia Virus reverse transcriptase increase thermostability through tighter binding to template-primer.
Posted Sun Jan 9 15:08:12 2011

Chromatin structure analyses identify miRNA promoters.
Posted Sun Jan 9 15:08:12 2011

Characterization of Moloney Murine Leukaemia Virus/Avian Myeloblastosis Virus Chimeric Reverse Transcriptases.
Posted Sun Jan 9 15:08:12 2011

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
Posted Sun Jan 9 15:08:12 2011

Functional analysis of the evolutionarily conserved cis-regulatory elements on the sox17 gene in zebrafish.
Posted Sun Jan 9 15:08:12 2011

Chromosomal dynamics at the Shh locus: limb bud-specific differential regulation of competence and active transcription.
Posted Sun Jan 9 15:08:12 2011

One for all? A viral protein supplants the mRNA cap-binding complex.
Posted Sun Jan 9 15:08:12 2011

Profiling model T-cell metagenomes with short reads.
Posted Sun Jan 9 15:08:12 2011

Reprogramming of fibroblasts into induced pluripotent stem cells with orphan nuclear receptor Esrrb.
Posted Sun Jan 9 15:08:12 2011

Precision and diversity in an odor map on the olfactory bulb.
Posted Sun Jan 9 15:08:12 2011

Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus.
Posted Sun Jan 9 15:08:12 2011

Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs.
Posted Sun Jan 9 15:08:12 2011

Design of 240,000 orthogonal 25mer DNA barcode probes.
Posted Sun Jan 9 15:08:12 2011

Biological basis for restriction of microRNA targets to the 3' untranslated region in mammalian mRNAs.
Posted Sun Jan 9 15:08:12 2011

Mapping of class I and class II odorant receptors to glomerular domains by two distinct types of olfactory sensory neurons in the mouse.
Posted Sun Jan 9 15:08:12 2011

Reduced responsiveness to long-term monocular deprivation of parvalbumin neurons assessed by c-Fos staining in rat visual cortex.
Posted Sun Jan 9 15:08:12 2011

Molecular and evolutionary history of melanism in North American gray wolves.
Posted Sun Jan 9 15:08:12 2011

A synthetic snRNA m3G-CAP enhances nuclear delivery of exogenous proteins and nucleic acids.
Posted Sun Jan 9 15:08:12 2011

Genome-Wide Analysis In Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling.
Posted Sun Jan 9 15:08:12 2011

Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing.
Posted Sun Jan 9 15:08:12 2011

Identification of a cytoplasmic complex that adds a cap onto 5'-monophosphate RNA.
Posted Sun Jan 9 15:08:12 2011

Highly conserved non-coding elements on either side of SOX9 associated with Pierre Robin sequence.
Posted Sun Jan 9 15:08:12 2011

Massive transcriptional start site analysis of human genes in hypoxia cells.
Posted Sun Jan 9 15:08:12 2011

Functional Characterization and Modulation of the DNA Cleavage Efficiency of Type III Restriction Endonuclease EcoP15I in Its Interaction with Two Sites in the DNA Target.
Posted Sun Jan 9 15:08:12 2011

A library-based method to rapidly analyse chromatin accessibility at multiple genomic regions.
Posted Sun Jan 9 15:08:12 2011

Long 3’-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae.
Posted Sun Jan 9 15:08:12 2011

Conserved recoding RNA editing of vertebrate C1q-related factor C1QL1.
Posted Sun Jan 9 15:08:12 2011

Novel method for high-throughput colony PCR screening in nanoliter-reactors.
Posted Sun Jan 9 15:08:12 2011

High-throughput verification of transcriptional starting sites by Deep-RACE.
Posted Sun Jan 9 15:08:12 2011

RNA transcripts, miRNA-sized fragments and proteins produced from D4Z4 units: new candidates for the pathophysiology of facioscapulohumeral dystrophy.
Posted Sun Jan 9 15:08:12 2011

Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis.
Posted Sun Jan 9 15:08:12 2011

Axonal mRNA in uninjured and regenerating cortical mammalian axons.
Posted Sun Jan 9 15:08:12 2011

Progressive lengthening of 3’ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development.
Posted Sun Jan 9 15:08:12 2011

Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by the MLL Fusion Partner TET1.
Posted Sun Jan 9 15:08:12 2011

The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain.
Posted Sun Jan 9 15:08:12 2011

Redefining microRNA targets.
Posted Sun Jan 9 15:08:12 2011

Kinetics and thermodynamics of DNA hybridization on gold nanoparticles.
Posted Sun Jan 9 15:08:12 2011

Formyl peptide receptor-like proteins are a novel family of vomeronasal chemosensors.
Posted Sun Jan 9 15:08:12 2011

Automated microfluidic chromatin immunoprecipitation from 2,000 cells.
Posted Sun Jan 9 15:08:12 2011

High-throughput sequencing of the zebrafish antibody repertoire.
Posted Sun Jan 9 15:08:12 2011

Direct detection of abortive RNA transcripts in vivo.
Posted Sun Jan 9 15:08:12 2011

qiRNA is a new type of small interfering RNA induced by DNA damage.
Posted Sun Jan 9 15:08:12 2011

dUTP incorporation into genomic DNA is linked to transcription in yeast.
Posted Sun Jan 9 15:08:12 2011

Essential role for a long-term depression mechanism in ocular dominance plasticity.
Posted Sun Jan 9 15:08:12 2011

Small RNAs derived from snoRNAs.
Posted Sun Jan 9 15:08:12 2011

Chemically inducible inactivation of protein synthesis in genetically targeted neurons.
Posted Sun Jan 9 15:08:12 2011

Transcriptional and electrophysiological maturation of neocortical fast-spiking GABAergic interneurons.
Posted Sun Jan 9 15:08:12 2011

L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism.
Posted Sun Jan 9 15:08:12 2011

Formyl peptide receptors are candidate chemosensory receptors in the vomeronasal organ.
Posted Sun Jan 9 15:08:12 2011

Stalled Hox promoters as chromosomal boundaries.
Posted Sun Jan 9 15:08:12 2011

Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq.
Posted Sun Jan 9 15:08:12 2011

Definition, conservation and epigenetics of housekeeping and tissue-enriched genes.
Posted Sun Jan 9 15:08:12 2011

Efficient oligonucleotide-mediated degradation of nuclear noncoding RNAs in mammalian cultured cells.
Posted Sun Jan 9 15:08:12 2011

Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing.
Posted Sun Jan 9 15:08:12 2011

A gene network regulating lysosomal biogenesis and function.
Posted Sun Jan 9 15:08:12 2011

Allelic Polymorphism within the TAS1R3 Promoter Is Associated with Human Taste Sensitivity to Sucrose.
Posted Sun Jan 9 15:08:12 2011

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
Posted Sun Jan 9 15:08:12 2011

The MmeI family: type II restriction-modification enzymes that employ single-strand modification for host protection.
Posted Sun Jan 9 15:08:12 2011

Dependence of mouse embryonic stem cells on threonine catabolism.
Posted Sun Jan 9 15:08:12 2011

Transcriptome analysis by strand-specific sequencing of complementary DNA.
Posted Sun Jan 9 15:08:12 2011

Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry.
Posted Sun Jan 9 15:08:12 2011

Quantitative phenotyping via deep barcode sequencing.
Posted Sun Jan 9 15:08:12 2011

RNA Polymerase III Detects Cytosolic DNA and Induces Type I Interferons through the RIG-I Pathway.
Posted Sun Jan 9 15:08:12 2011

Inclusion formation and neuronal cell death through neuron-to-neuron transmission of α-synuclein.
Posted Sun Jan 9 15:08:12 2011

Conservation of enhancer location in divergent insects.
Posted Sun Jan 9 15:08:12 2011

Digital transcriptome profiling using selective hexamer priming for cDNA synthesis.
Posted Sun Jan 9 15:08:12 2011

Cell contact-dependent acquisition of cellular and viral nonautonomously encoded small RNAs.
Posted Sun Jan 9 15:08:12 2011

Identification of brain transcriptional variation reproduced in peripheral blood: an approach for mapping brain expression traits.
Posted Sun Jan 9 15:08:12 2011

Zip Nucleic Acids: new high affinity oligonucleotides as potent primers for PCR and reverse transcription.
Posted Sun Jan 9 15:08:12 2011

Regionalized loss of parvalbumin interneurons in the cerebral cortex of mice with deficits in GFRalpha1 signaling.
Posted Sun Jan 9 15:08:12 2011

Identification of gemin5 as a novel 7-methylguanosine cap-binding protein.
Posted Sun Jan 9 15:08:12 2011

Conserved repertoire of orthologous vomeronasal type 1 receptor genes in ruminant species.
Posted Sun Jan 9 15:08:12 2011

Importance of 5′-terminal blocking structure to stabilize mRNA in eukaryotic protein synthesis.
Posted Sun Jan 9 15:08:12 2011

Flexibility of transcription factor target site position in conserved cis-regulatory modules.
Posted Sun Jan 9 15:08:12 2011

Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms.
Posted Sun Jan 9 15:08:12 2011

Biotin is not a natural histone modification.
Posted Sun Jan 9 15:08:12 2011

Cis-regulation and chromosomal rearrangement of the fgf8 locus after the teleost/tetrapod split.
Posted Sun Jan 9 15:08:12 2011

Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast.
Posted Sun Jan 9 15:08:12 2011

High DNA melting temperature predicts transcription start site location in human and mouse.
Posted Sun Jan 9 15:08:12 2011

RNA polymerase II-TFIIB structure and mechanism of transcription initiation.
Posted Sun Jan 9 15:08:12 2011

Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing.
Posted Sun Jan 9 15:08:12 2011

A guide for in-house design of template-switch-based 5′ rapid amplification of cDNA ends systems.
Posted Sun Jan 9 15:08:12 2011

Enhanced amplification of GC-rich DNA with two organic reagents.
Posted Sun Jan 9 15:08:12 2011

Genetic analysis of the NEUROG2 gene in patients with Parkinson's disease.
Posted Sun Jan 9 15:08:12 2011

Microdroplet-based PCR enrichment for large-scale targeted sequencing.
Posted Sun Jan 9 15:08:12 2011

Functionally conserved cis-regulatory elements of COL18A1 identified through zebrafish transgenesis.
Posted Sun Jan 9 15:08:12 2011

High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis.
Posted Sun Jan 9 15:08:12 2011

Enhanced mRNA cap methylation increases Cyclin D1 expression and promotes cell transformation.
Posted Sun Jan 9 15:08:12 2011

MOR23 Promotes Muscle Regeneration and Regulates Cell Adhesion and Migration.
Posted Sun Jan 9 15:08:12 2011

A Simple Cipher Governs DNA Recognition by TAL Effectors.
Posted Sun Jan 9 15:08:12 2011

Breaking the Code of DNA-Binding Specificity of TAL-Type III Effectors.
Posted Sun Jan 9 15:08:12 2011

Cancer-associated IDH1 mutations produce 2-hydroxyglutarate.
Posted Sun Jan 9 15:08:12 2011

Classical MHCI molecules regulate retinogeniculate refinement and limit ocular dominance plasticity.
Posted Sun Jan 9 15:08:12 2011

Extreme variability among mammalian V1R gene families.
Posted Sun Jan 9 15:08:12 2011

Nuclear Receptor-Induced Chromosomal Proximity and DNA Breaks Underlie Specific Translocations in Cancer.
Posted Sun Jan 9 15:08:12 2011

Somatic sex reprogramming of adult ovaries to testes by FOXL2 ablation.
Posted Sun Jan 9 15:08:12 2011

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants.
Posted Sun Jan 9 15:08:12 2011

Long nuclear-retained non-coding RNAs and allele-specific higher-order chromatin organization at imprinted snoRNA gene arrays.
Posted Sun Jan 9 15:08:12 2011

Rate, molecular spectrum, and consequences of human mutation.
Posted Sun Jan 9 15:08:12 2011

High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets.
Posted Sun Jan 9 15:08:12 2011

Alternative splicing produces high levels of noncoding isoforms of bHLH transcription factors during development.
Posted Sun Jan 9 15:08:12 2011

Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli.
Posted Sun Jan 9 15:08:12 2011

FRT-seq: amplification-free, strand-specific transcriptome sequencing.
Posted Sun Jan 9 15:08:12 2011

Digital nature of the immediate-early transcriptional response.
Posted Sun Jan 9 15:08:12 2011

Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor.
Posted Sun Jan 9 15:08:12 2011

Digital transcriptome profiling from attomole-level RNA samples.
Posted Sun Jan 9 15:08:12 2011

Synthetic design of strong promoters.
Posted Sun Jan 9 15:08:12 2011

Close association of RNA polymerase II and many transcription factors with Pol III genes.
Posted Sun Jan 9 15:08:12 2011

Histidine-mediated RNA transfer to GDP for unique mRNA capping by vesicular stomatitis virus RNA polymerase.
Posted Sun Jan 9 15:08:12 2011

The primary transcriptome of the major human pathogen Helicobacter pylori.
Posted Sun Jan 9 15:08:12 2011

MBD2 and MeCP2 Regulate Distinct Transitions in the Stage-Specific Differentiation of Olfactory Receptor Neurons.
Posted Sun Jan 9 15:08:12 2011

High-performance single cell genetic analysis using microfluidic emulsion generator arrays.
Posted Sun Jan 9 15:08:12 2011

Critical Period for Inhibitory Plasticity in RodentBinocular V1.
Posted Sun Jan 9 15:08:12 2011

Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products.
Posted Sun Jan 9 15:08:12 2011

The lta4h Locus Modulates Susceptibility to Mycobacterial Infection in Zebrafish and Humans.
Posted Sun Jan 9 15:08:12 2011

Loss of Arc renders the visual cortex impervious to the effects of sensory experience or deprivation.
Posted Sun Jan 9 15:08:12 2011

End labeling of enzymatically decapped mRNA.
Posted Sun Jan 9 15:08:12 2011

Optimized design and data analysis of tag-based cytosine methylation assays.
Posted Sun Jan 9 15:08:12 2011

Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers.
Posted Sun Jan 9 15:08:12 2011

Addition of poly(A) and poly(A)-rich tails during RNA degradation in the cytoplasm of human cells.
Posted Sun Jan 9 15:08:12 2011

Neuronal pentraxins mediate silent synapse conversion in the developing visual system.
Posted Sun Jan 9 15:08:12 2011

Widespread transcription at neuronal activity-regulated enhancers.
Posted Sun Jan 9 15:08:12 2011

Characterization of transcription start sites of putative non-coding RNAs by multifaceted use of massively paralleled sequencer.
Posted Sun Jan 9 15:08:12 2011

A large fraction of extragenic RNA pol II transcription sites overlap enhancers.
Posted Sun Jan 9 15:08:12 2011

A paired-end sequencing strategy to map the complex landscape of transcription initiation.
Posted Sun Jan 9 15:08:12 2011

Tiny abortive initiation transcripts exert antitermination activity on an RNA hairpin-dependent intrinsic terminator.
Posted Sun Jan 9 15:08:12 2011

The Landscape of C. elegans 3'UTRs.
Posted Sun Jan 9 15:08:12 2011

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.
Posted Sun Jan 9 15:08:12 2011

A flexible and efficient template format for circular consensus sequencing and SNP detection.
Posted Sun Jan 9 15:08:12 2011

Transcriptional regulation by small RNAs at sequences downstream from 3' gene termini.
Posted Sun Jan 9 15:08:12 2011

Conserved role of intragenic DNA methylation in regulating alternative promoters.
Posted Sun Jan 9 15:08:12 2011

Global analysis of trans-splicing in Drosophila.
Posted Sun Jan 9 15:08:12 2011

High-resolution analysis of parent-of-origin allelic expression in the mouse brain.
Posted Sun Jan 9 15:08:12 2011

Long noncoding RNA as modular scaffold of histone modification complexes.
Posted Sun Jan 9 15:08:12 2011

TATA is a modular component of synthetic promoters.
Posted Sun Jan 9 15:08:12 2011

Sirtuin 1 regulation of developmental genes during differentiation of stem cells.
Posted Sun Jan 9 15:08:12 2011

Chromosomal location-dependent nonstochastic onset of odor receptor expression.
Posted Sun Jan 9 15:08:12 2011

New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism.
Posted Sun Jan 9 15:08:12 2011

Trimethylguanosine capping selectively promotes expression of Rev-dependent HIV-1 RNAs.
Posted Sun Jan 9 15:08:12 2011

Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis.
Posted Sun Jan 9 15:08:12 2011

Sequence-specific cleavage of RNA by Type II restriction enzymes.
Posted Sun Jan 9 15:08:12 2011

An SNP in an ultraconserved regulatory element affects Dlx5/Dlx6 regulation in the forebrain.
Posted Sun Jan 9 15:08:12 2011

Mammalian microRNAs predominantly act to decrease target mRNA levels.
Posted Sun Jan 9 15:08:12 2011

Experience-dependent reactivation of ocular dominance plasticity in the adult visual cortex.
Posted Sun Jan 9 15:08:12 2011

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.
Posted Sun Jan 9 15:08:12 2011

A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression.
Posted Sun Jan 9 15:08:12 2011

ChIP-Seq identification of weakly conserved heart enhancer.
Posted Sun Jan 9 15:08:12 2011

Distinct 3'UTRs differentially regulate activity-dependent translation of brain-derived neurotrophic factor (BDNF).
Posted Sun Jan 9 15:08:12 2011

The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery.
Posted Sun Jan 9 15:08:12 2011

Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells.
Posted Sun Jan 9 15:08:12 2011

Genome-wide measurement of RNA secondary structure in yeast.
Posted Sun Jan 9 15:08:12 2011

Selective cell death mediated by small conditional RNAs.
Posted Sun Jan 9 15:08:12 2011

Branchiostoma floridae has separate healing and sealing enzymes for 5'-phosphate RNA ligation.
Posted Sun Jan 9 15:08:12 2011

Foxa2 regulates the expression of Nato3 in the floor plate by a novel evolutionarily-conserved promoter.
Posted Sun Jan 9 15:08:12 2011

An arthropod cis-regulatory element functioning in sensory organ precursor development dates back to the Cambrian.
Posted Sun Jan 9 15:08:12 2011

Structure of an Ebf1:DNA complex reveals unusual DNA recognition and structural homology with Rel proteins.
Posted Sun Jan 9 15:08:12 2011

Cell-permeable Foxp3 protein alleviates autoimmune disease associated with inflammatory bowel disease and allergic airway inflammation.
Posted Sun Jan 9 15:08:12 2011

Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing.
Posted Sun Jan 9 15:08:12 2011

Fitness correlates of heritable variation in antibody responsiveness in a wild mammal.
Posted Sun Jan 9 15:08:12 2011

A cluster of non-redundant Ngn1 binding sites is required for regulation of deltaA expression in zebrafish.
Posted Sun Jan 9 15:08:12 2011

Epigenetic control of retrotransposon expression in human embryonic stem cells.
Posted Sun Jan 9 15:08:12 2011

Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome.
Posted Sun Jan 9 15:08:12 2011

Correlated Levels of mRNA and Soma Size in Single Identified Neurons: Evidence for Compartment-specific Regulation of Gene Expression.
Posted Sun Jan 9 15:08:12 2011

Role of Pax3 acetylation in the regulation of Hes1 and Neurog2.
Posted Sun Jan 9 15:08:12 2011

Size fractionation of double-stranded DNA by precipitation with polyethylene glycol.
Posted Sun Jan 9 15:08:12 2011

Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.
Posted Sun Jan 9 15:08:12 2011

U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus.
Posted Sun Jan 9 15:08:12 2011

Gamma-monomethyl phosphate: a cap structure in spliceosomal U6 small nuclear RNA.
Posted Sun Jan 9 15:08:12 2011

Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms.
Posted Sun Jan 9 15:08:12 2011

Central dogma of molecular biology.
Posted Sun Jan 9 15:08:12 2011

Polypeptides encoded by polyadenylated and non-polyadenylated messenger RNAs from normal and heat shocked HeLa cells.
Posted Sun Jan 9 15:08:12 2011

Strand displacement synthesis capability of Moloney murine leukemia virus reverse transcriptase.
Posted Sun Jan 9 15:08:12 2011

Cloning of RNA molecules in vitro.
Posted Sun Jan 9 15:08:12 2011

U21, a novel small nucleolar RNA with a 13 nt. complementarity to 28S rRNA, is encoded in an intron of ribosomal protein L5 gene in chicken and mammals.
Posted Sun Jan 9 15:08:12 2011

Molecular cloning of the olfactory neuronal transcription factor Olf-1 by genetic selection in yeast.
Posted Sun Jan 9 15:08:12 2011

Small nucleolar RNAs encoded by introns of the human cell cycle regulatory gene RCC1.
Posted Sun Jan 9 15:08:12 2011

Determination of messenger RNA 5'-ends by reverse transcription of the cap structure.
Posted Sun Jan 9 15:08:12 2011

High-efficiency full-length cDNA cloning by biotinylated CAP trapper.
Posted Sun Jan 9 15:08:12 2011

A novel family of putative pheromone receptors in mammals with a topographically organized and sexually dimorphic distribution.
Posted Sun Jan 9 15:08:12 2011

A multigene family encoding a diverse array of putative pheromone receptors in mammals.
Posted Sun Jan 9 15:08:12 2011

Thermostabilization and thermoactivation of thermolabile enzyme by trehalose and its application for the synthesis of full length cDNA.
Posted Sun Jan 9 15:08:12 2011

Characterization of RNA strand displacement synthesis by Moloney murine leukemia virus reverse transcriptase.
Posted Sun Jan 9 15:08:12 2011

Increased specificity of reverse transcription priming by trehalose and oligo-blockers allows high-efficiency window separation of mRNA display.
Posted Sun Jan 9 15:08:12 2011

Methods and compositions for full-length cDNA Cloning using a template-switching oligonucleotide.
Posted Sun Jan 9 15:08:12 2011

Method for the 5’-cap-dependent amplification of cDNAs.
Posted Sun Jan 9 15:08:12 2011

To Do
Posted Sun Jan 9 15:08:12 2011

Method for suppressing DNA fragment amplification during PCR.
Posted Sun Jan 9 15:08:12 2011

Method for improving heat stability of RNA.
Posted Sun Jan 9 15:08:12 2011

ScriptCap™ m7G Capping System.
Posted Sun Jan 9 15:08:12 2011

Process for selective amplification of a full-length cDNA involving an anchor nucleic acid.
Posted Sun Jan 9 15:08:12 2011