Chez Charles/ biblio/ Assembly of a Complete Mitogenome of Chrysanthemum nankingense Using Oxford Nanopore Long Reads and the Diversity and Evolution of Asteraceae Mitogenomes.

Wang S, Song Q, Li S, Hu Z, Dong G, Song C, Huang H, Liu Y.

Genes (Basel). 2018 Nov 12;9(11). pii: E547. doi:10.3390/genes9110547

Assembly of a Complete Mitogenome of Chrysanthemum nankingense Using Oxford Nanopore Long Reads and the Diversity and Evolution of Asteraceae Mitogenomes.

“For the assembly using the ONT-only assembly method, the mitochondrial long reads were firstly filtered from the total ONT sequencing data using BWA v0.7.16 and SAMtools v1.9 using the contig of hybrid assembly as the reference. Then, an ONT-only assembly was generated using Canu v1.7.”