Varoquaux N, Liachko I, Ay F, Burton JN, Shendure J, Dunham MJ, Vert JP, Noble WS.

Nucleic Acids Res. 2015 Jun 23;43(11):5331-9. doi:10.1093/nar/gkv424.

Accurate identification of centromere locations in yeast genomes using Hi-C.

Tested on yeast and Plasmodium falciparium. First, detects regions enriched in Hi-C contacts. Then, prioritises local maxima enriched in trans-contacts.